Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14405

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14395 and A4249_RS16980 are separated by 71 nucleotidesA4249_RS16980 and A4249_RS14400 overlap by 40 nucleotidesA4249_RS14400 and A4249_RS14405 are separated by 91 nucleotidesA4249_RS14405 and A4249_RS14410 are separated by 177 nucleotides A4249_RS14395: A4249_RS14395 - hypothetical protein, at 2,909,451 to 2,909,906 _RS14395 A4249_RS16980: A4249_RS16980 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,909,978 to 2,910,091 _RS16980 A4249_RS14400: A4249_RS14400 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,910,052 to 2,910,741 _RS14400 A4249_RS14405: A4249_RS14405 - TetR/AcrR family transcriptional regulator, at 2,910,833 to 2,911,588 _RS14405 A4249_RS14410: A4249_RS14410 - TonB-dependent receptor, at 2,911,766 to 2,913,994 _RS14410 Position (kb) 2910 2911 2912Strain fitness (log2 ratio) -2 -1 0 1at 2910.216 kb on - strand, within A4249_RS14400at 2910.216 kb on - strand, within A4249_RS14400at 2910.425 kb on + strand, within A4249_RS14400at 2910.425 kb on + strand, within A4249_RS14400at 2910.608 kb on + strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.609 kb on - strand, within A4249_RS14400at 2910.619 kb on + strand, within A4249_RS14400at 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.895 kb on + strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.896 kb on - strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.897 kb on + strandat 2910.898 kb on - strandat 2910.898 kb on - strandat 2910.898 kb on - strandat 2910.898 kb on - strandat 2911.005 kb on + strand, within A4249_RS14405at 2911.005 kb on + strand, within A4249_RS14405at 2911.006 kb on - strand, within A4249_RS14405at 2911.015 kb on - strand, within A4249_RS14405at 2911.015 kb on - strand, within A4249_RS14405at 2911.015 kb on - strand, within A4249_RS14405at 2911.060 kb on - strand, within A4249_RS14405at 2911.152 kb on + strand, within A4249_RS14405at 2911.152 kb on + strand, within A4249_RS14405at 2911.152 kb on + strand, within A4249_RS14405at 2911.152 kb on + strand, within A4249_RS14405at 2911.153 kb on - strand, within A4249_RS14405at 2911.153 kb on - strand, within A4249_RS14405at 2911.153 kb on - strand, within A4249_RS14405at 2911.153 kb on - strand, within A4249_RS14405at 2911.257 kb on + strand, within A4249_RS14405at 2911.257 kb on + strand, within A4249_RS14405at 2911.257 kb on + strand, within A4249_RS14405at 2911.257 kb on + strand, within A4249_RS14405at 2911.258 kb on - strand, within A4249_RS14405at 2911.347 kb on + strand, within A4249_RS14405at 2911.347 kb on + strand, within A4249_RS14405at 2911.347 kb on + strand, within A4249_RS14405at 2911.347 kb on + strand, within A4249_RS14405at 2911.347 kb on + strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.348 kb on - strand, within A4249_RS14405at 2911.350 kb on + strand, within A4249_RS14405at 2911.351 kb on - strand, within A4249_RS14405at 2911.351 kb on - strand, within A4249_RS14405at 2911.351 kb on - strand, within A4249_RS14405at 2911.410 kb on + strand, within A4249_RS14405at 2911.599 kb on + strandat 2911.692 kb on + strandat 2911.759 kb on + strandat 2911.759 kb on + strandat 2911.759 kb on + strandat 2911.760 kb on - strandat 2911.760 kb on - strandat 2912.138 kb on + strand, within A4249_RS14410at 2912.138 kb on + strand, within A4249_RS14410at 2912.138 kb on + strand, within A4249_RS14410at 2912.138 kb on + strand, within A4249_RS14410at 2912.139 kb on - strand, within A4249_RS14410at 2912.139 kb on - strand, within A4249_RS14410at 2912.139 kb on - strand, within A4249_RS14410at 2912.139 kb on - strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.153 kb on + strand, within A4249_RS14410at 2912.154 kb on - strand, within A4249_RS14410at 2912.154 kb on - strand, within A4249_RS14410at 2912.154 kb on - strand, within A4249_RS14410at 2912.185 kb on + strand, within A4249_RS14410at 2912.186 kb on - strand, within A4249_RS14410at 2912.186 kb on - strand, within A4249_RS14410at 2912.238 kb on - strand, within A4249_RS14410at 2912.266 kb on + strand, within A4249_RS14410at 2912.266 kb on + strand, within A4249_RS14410at 2912.267 kb on - strand, within A4249_RS14410at 2912.267 kb on - strand, within A4249_RS14410at 2912.267 kb on - strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.270 kb on + strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.271 kb on - strand, within A4249_RS14410at 2912.330 kb on + strand, within A4249_RS14410at 2912.331 kb on - strand, within A4249_RS14410at 2912.332 kb on + strand, within A4249_RS14410at 2912.332 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.408 kb on + strand, within A4249_RS14410at 2912.409 kb on - strand, within A4249_RS14410at 2912.409 kb on - strand, within A4249_RS14410at 2912.409 kb on - strand, within A4249_RS14410at 2912.456 kb on + strand, within A4249_RS14410at 2912.456 kb on + strand, within A4249_RS14410at 2912.457 kb on - strand, within A4249_RS14410at 2912.457 kb on - strand, within A4249_RS14410at 2912.457 kb on - strand, within A4249_RS14410

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,910,216 - A4249_RS14400 0.24 +0.3
2,910,216 - A4249_RS14400 0.24 +0.4
2,910,425 + A4249_RS14400 0.54 +0.5
2,910,425 + A4249_RS14400 0.54 +0.1
2,910,608 + A4249_RS14400 0.81 -0.2
2,910,609 - A4249_RS14400 0.81 +0.0
2,910,609 - A4249_RS14400 0.81 +0.5
2,910,609 - A4249_RS14400 0.81 -0.7
2,910,609 - A4249_RS14400 0.81 -1.6
2,910,609 - A4249_RS14400 0.81 -0.0
2,910,609 - A4249_RS14400 0.81 +0.3
2,910,619 + A4249_RS14400 0.82 +0.1
2,910,895 + -0.2
2,910,895 + -0.3
2,910,895 + -0.3
2,910,895 + +1.1
2,910,895 + -0.6
2,910,895 + -0.5
2,910,895 + +0.2
2,910,895 + +1.4
2,910,895 + -0.1
2,910,895 + +0.5
2,910,895 + -0.8
2,910,895 + -0.2
2,910,895 + -0.8
2,910,896 - -0.1
2,910,896 - -0.6
2,910,896 - +0.1
2,910,896 - +0.7
2,910,896 - -0.4
2,910,896 - -0.9
2,910,896 - -0.3
2,910,896 - +0.2
2,910,896 - -0.1
2,910,897 + -0.9
2,910,897 + +1.1
2,910,897 + +0.7
2,910,897 + -0.0
2,910,897 + -0.0
2,910,897 + -0.2
2,910,897 + -0.3
2,910,897 + -0.2
2,910,897 + -0.1
2,910,898 - -0.6
2,910,898 - +0.3
2,910,898 - -0.2
2,910,898 - +0.5
2,911,005 + A4249_RS14405 0.23 -0.2
2,911,005 + A4249_RS14405 0.23 -0.8
2,911,006 - A4249_RS14405 0.23 +0.3
2,911,015 - A4249_RS14405 0.24 -0.3
2,911,015 - A4249_RS14405 0.24 +1.7
2,911,015 - A4249_RS14405 0.24 -0.1
2,911,060 - A4249_RS14405 0.30 -1.2
2,911,152 + A4249_RS14405 0.42 +0.7
2,911,152 + A4249_RS14405 0.42 +0.2
2,911,152 + A4249_RS14405 0.42 +1.3
2,911,152 + A4249_RS14405 0.42 -1.4
2,911,153 - A4249_RS14405 0.42 -0.2
2,911,153 - A4249_RS14405 0.42 -0.9
2,911,153 - A4249_RS14405 0.42 +0.1
2,911,153 - A4249_RS14405 0.42 -0.2
2,911,257 + A4249_RS14405 0.56 +0.9
2,911,257 + A4249_RS14405 0.56 +0.4
2,911,257 + A4249_RS14405 0.56 +0.3
2,911,257 + A4249_RS14405 0.56 -0.0
2,911,258 - A4249_RS14405 0.56 +0.3
2,911,347 + A4249_RS14405 0.68 +0.2
2,911,347 + A4249_RS14405 0.68 -0.2
2,911,347 + A4249_RS14405 0.68 -0.1
2,911,347 + A4249_RS14405 0.68 +1.0
2,911,347 + A4249_RS14405 0.68 +1.4
2,911,348 - A4249_RS14405 0.68 +0.9
2,911,348 - A4249_RS14405 0.68 +0.9
2,911,348 - A4249_RS14405 0.68 -0.2
2,911,348 - A4249_RS14405 0.68 +0.6
2,911,348 - A4249_RS14405 0.68 -0.7
2,911,348 - A4249_RS14405 0.68 -0.6
2,911,348 - A4249_RS14405 0.68 -0.1
2,911,348 - A4249_RS14405 0.68 +0.5
2,911,350 + A4249_RS14405 0.68 +1.0
2,911,351 - A4249_RS14405 0.69 +0.9
2,911,351 - A4249_RS14405 0.69 +0.1
2,911,351 - A4249_RS14405 0.69 -0.1
2,911,410 + A4249_RS14405 0.76 +0.5
2,911,599 + +0.5
2,911,692 + -0.3
2,911,759 + -0.4
2,911,759 + -0.2
2,911,759 + +0.1
2,911,760 - +0.1
2,911,760 - +0.1
2,912,138 + A4249_RS14410 0.17 +0.7
2,912,138 + A4249_RS14410 0.17 -0.3
2,912,138 + A4249_RS14410 0.17 +0.9
2,912,138 + A4249_RS14410 0.17 +0.5
2,912,139 - A4249_RS14410 0.17 +0.1
2,912,139 - A4249_RS14410 0.17 +0.6
2,912,139 - A4249_RS14410 0.17 -1.0
2,912,139 - A4249_RS14410 0.17 +0.0
2,912,153 + A4249_RS14410 0.17 -0.0
2,912,153 + A4249_RS14410 0.17 -0.5
2,912,153 + A4249_RS14410 0.17 +0.1
2,912,153 + A4249_RS14410 0.17 -0.1
2,912,153 + A4249_RS14410 0.17 +0.5
2,912,153 + A4249_RS14410 0.17 -0.8
2,912,153 + A4249_RS14410 0.17 -0.9
2,912,153 + A4249_RS14410 0.17 -0.6
2,912,153 + A4249_RS14410 0.17 +0.5
2,912,154 - A4249_RS14410 0.17 -0.3
2,912,154 - A4249_RS14410 0.17 +0.1
2,912,154 - A4249_RS14410 0.17 +0.1
2,912,185 + A4249_RS14410 0.19 +0.3
2,912,186 - A4249_RS14410 0.19 +0.1
2,912,186 - A4249_RS14410 0.19 -0.3
2,912,238 - A4249_RS14410 0.21 -1.8
2,912,266 + A4249_RS14410 0.22 -0.4
2,912,266 + A4249_RS14410 0.22 -0.2
2,912,267 - A4249_RS14410 0.22 -0.4
2,912,267 - A4249_RS14410 0.22 -0.6
2,912,267 - A4249_RS14410 0.22 +0.0
2,912,270 + A4249_RS14410 0.23 -0.0
2,912,270 + A4249_RS14410 0.23 -0.8
2,912,270 + A4249_RS14410 0.23 +0.2
2,912,270 + A4249_RS14410 0.23 -0.5
2,912,270 + A4249_RS14410 0.23 +0.4
2,912,270 + A4249_RS14410 0.23 -0.0
2,912,270 + A4249_RS14410 0.23 -0.3
2,912,270 + A4249_RS14410 0.23 +0.4
2,912,271 - A4249_RS14410 0.23 +0.1
2,912,271 - A4249_RS14410 0.23 -0.5
2,912,271 - A4249_RS14410 0.23 -0.2
2,912,271 - A4249_RS14410 0.23 -1.2
2,912,271 - A4249_RS14410 0.23 +0.4
2,912,271 - A4249_RS14410 0.23 -1.1
2,912,271 - A4249_RS14410 0.23 +0.3
2,912,271 - A4249_RS14410 0.23 -0.1
2,912,330 + A4249_RS14410 0.25 +0.3
2,912,331 - A4249_RS14410 0.25 -0.1
2,912,332 + A4249_RS14410 0.25 -0.7
2,912,332 + A4249_RS14410 0.25 +0.5
2,912,408 + A4249_RS14410 0.29 +0.4
2,912,408 + A4249_RS14410 0.29 +0.9
2,912,408 + A4249_RS14410 0.29 -0.4
2,912,408 + A4249_RS14410 0.29 +0.6
2,912,408 + A4249_RS14410 0.29 -0.3
2,912,408 + A4249_RS14410 0.29 +0.9
2,912,408 + A4249_RS14410 0.29 -0.5
2,912,408 + A4249_RS14410 0.29 -0.5
2,912,408 + A4249_RS14410 0.29 -0.8
2,912,409 - A4249_RS14410 0.29 +0.1
2,912,409 - A4249_RS14410 0.29 +0.3
2,912,409 - A4249_RS14410 0.29 -0.8
2,912,456 + A4249_RS14410 0.31 +0.7
2,912,456 + A4249_RS14410 0.31 +0.1
2,912,457 - A4249_RS14410 0.31 -0.4
2,912,457 - A4249_RS14410 0.31 -0.0
2,912,457 - A4249_RS14410 0.31 -0.3

Or see this region's nucleotide sequence