Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12195

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12185 and A4249_RS12190 are separated by 135 nucleotidesA4249_RS12190 and A4249_RS12195 are separated by 4 nucleotidesA4249_RS12195 and A4249_RS12200 are separated by 30 nucleotidesA4249_RS12200 and A4249_RS12205 are separated by 37 nucleotides A4249_RS12185: A4249_RS12185 - adenosylhomocysteinase, at 2,447,391 to 2,448,782 _RS12185 A4249_RS12190: A4249_RS12190 - Tat pathway signal protein, at 2,448,918 to 2,449,313 _RS12190 A4249_RS12195: A4249_RS12195 - primosomal protein N', at 2,449,318 to 2,451,495 _RS12195 A4249_RS12200: A4249_RS12200 - fructose-6-phosphate aldolase, at 2,451,526 to 2,452,179 _RS12200 A4249_RS12205: A4249_RS12205 - DUF484 family protein, at 2,452,217 to 2,452,930 _RS12205 Position (kb) 2449 2450 2451 2452Strain fitness (log2 ratio) -2 -1 0 1at 2448.840 kb on - strandat 2448.840 kb on - strandat 2448.853 kb on + strandat 2448.854 kb on - strandat 2448.854 kb on - strandat 2448.854 kb on - strandat 2448.854 kb on - strandat 2448.859 kb on + strandat 2448.866 kb on - strandat 2448.891 kb on + strandat 2448.891 kb on + strandat 2448.891 kb on + strandat 2448.891 kb on + strandat 2448.892 kb on - strandat 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.017 kb on + strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.018 kb on - strand, within A4249_RS12190at 2449.161 kb on + strand, within A4249_RS12190at 2449.162 kb on - strand, within A4249_RS12190at 2449.162 kb on - strand, within A4249_RS12190at 2449.162 kb on - strand, within A4249_RS12190at 2449.162 kb on - strand, within A4249_RS12190at 2449.331 kb on + strandat 2451.513 kb on + strandat 2451.514 kb on - strandat 2451.514 kb on - strandat 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.923 kb on + strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.924 kb on - strand, within A4249_RS12200at 2451.925 kb on - strand, within A4249_RS12200at 2451.976 kb on + strand, within A4249_RS12200at 2451.977 kb on - strand, within A4249_RS12200at 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.170 kb on + strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.171 kb on - strandat 2452.177 kb on + strandat 2452.178 kb on - strandat 2452.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,448,840 - +1.2
2,448,840 - -0.1
2,448,853 + -1.0
2,448,854 - +0.2
2,448,854 - -0.0
2,448,854 - -0.3
2,448,854 - +0.1
2,448,859 + +0.9
2,448,866 - -0.4
2,448,891 + -0.3
2,448,891 + +0.7
2,448,891 + +0.6
2,448,891 + +0.2
2,448,892 - +0.7
2,449,017 + A4249_RS12190 0.25 +0.0
2,449,017 + A4249_RS12190 0.25 -0.5
2,449,017 + A4249_RS12190 0.25 -0.4
2,449,017 + A4249_RS12190 0.25 -2.4
2,449,017 + A4249_RS12190 0.25 -0.1
2,449,017 + A4249_RS12190 0.25 -0.2
2,449,017 + A4249_RS12190 0.25 -0.0
2,449,017 + A4249_RS12190 0.25 -0.0
2,449,017 + A4249_RS12190 0.25 -0.2
2,449,017 + A4249_RS12190 0.25 +0.2
2,449,017 + A4249_RS12190 0.25 +0.5
2,449,017 + A4249_RS12190 0.25 -0.7
2,449,017 + A4249_RS12190 0.25 +0.1
2,449,017 + A4249_RS12190 0.25 +0.2
2,449,017 + A4249_RS12190 0.25 +0.5
2,449,017 + A4249_RS12190 0.25 +0.4
2,449,017 + A4249_RS12190 0.25 -0.4
2,449,017 + A4249_RS12190 0.25 +0.0
2,449,018 - A4249_RS12190 0.25 +0.7
2,449,018 - A4249_RS12190 0.25 -0.1
2,449,018 - A4249_RS12190 0.25 -0.2
2,449,018 - A4249_RS12190 0.25 -0.4
2,449,018 - A4249_RS12190 0.25 -0.8
2,449,018 - A4249_RS12190 0.25 -0.0
2,449,161 + A4249_RS12190 0.61 -0.1
2,449,162 - A4249_RS12190 0.62 +0.2
2,449,162 - A4249_RS12190 0.62 +0.2
2,449,162 - A4249_RS12190 0.62 -0.3
2,449,162 - A4249_RS12190 0.62 +0.1
2,449,331 + -0.6
2,451,513 + -0.2
2,451,514 - +0.2
2,451,514 - +0.4
2,451,923 + A4249_RS12200 0.61 +0.5
2,451,923 + A4249_RS12200 0.61 -0.2
2,451,923 + A4249_RS12200 0.61 -0.5
2,451,923 + A4249_RS12200 0.61 +0.0
2,451,924 - A4249_RS12200 0.61 +0.2
2,451,924 - A4249_RS12200 0.61 -0.5
2,451,924 - A4249_RS12200 0.61 -0.3
2,451,925 - A4249_RS12200 0.61 +1.0
2,451,976 + A4249_RS12200 0.69 +0.2
2,451,977 - A4249_RS12200 0.69 -0.6
2,452,170 + +0.3
2,452,170 + +0.1
2,452,170 + -0.2
2,452,170 + +0.4
2,452,170 + -0.1
2,452,170 + -0.4
2,452,170 + -0.7
2,452,170 + +0.2
2,452,170 + -0.4
2,452,171 - +1.0
2,452,171 - +0.6
2,452,171 - +1.4
2,452,171 - -1.3
2,452,171 - -0.3
2,452,171 - -0.3
2,452,177 + -0.3
2,452,178 - +0.1
2,452,178 - +0.2

Or see this region's nucleotide sequence