Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08195

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08185 and A4249_RS08190 are separated by 86 nucleotidesA4249_RS08190 and A4249_RS08195 are separated by 60 nucleotidesA4249_RS08195 and A4249_RS08200 overlap by 1 nucleotides A4249_RS08185: A4249_RS08185 - YciI family protein, at 1,644,843 to 1,645,166 _RS08185 A4249_RS08190: A4249_RS08190 - DnaA/Hda family protein, at 1,645,253 to 1,645,933 _RS08190 A4249_RS08195: A4249_RS08195 - RNA degradosome polyphosphate kinase, at 1,645,994 to 1,648,210 _RS08195 A4249_RS08200: A4249_RS08200 - Ppx/GppA phosphatase family protein, at 1,648,210 to 1,649,697 _RS08200 Position (kb) 1645 1646 1647 1648 1649Strain fitness (log2 ratio) -1 0 1at 1645.107 kb on + strand, within A4249_RS08185at 1645.107 kb on + strand, within A4249_RS08185at 1645.107 kb on + strand, within A4249_RS08185at 1645.107 kb on + strand, within A4249_RS08185at 1645.241 kb on + strandat 1648.285 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.318 kb on + strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.319 kb on - strandat 1648.320 kb on + strandat 1648.321 kb on - strandat 1648.321 kb on - strandat 1648.321 kb on - strandat 1648.573 kb on + strand, within A4249_RS08200at 1648.573 kb on + strand, within A4249_RS08200at 1648.573 kb on + strand, within A4249_RS08200at 1648.574 kb on - strand, within A4249_RS08200at 1648.589 kb on + strand, within A4249_RS08200at 1648.589 kb on + strand, within A4249_RS08200at 1648.589 kb on + strand, within A4249_RS08200at 1648.590 kb on - strand, within A4249_RS08200at 1648.773 kb on + strand, within A4249_RS08200at 1648.774 kb on - strand, within A4249_RS08200at 1648.774 kb on - strand, within A4249_RS08200at 1648.774 kb on - strand, within A4249_RS08200at 1648.774 kb on - strand, within A4249_RS08200at 1648.811 kb on - strand, within A4249_RS08200at 1648.811 kb on - strand, within A4249_RS08200at 1648.892 kb on - strand, within A4249_RS08200at 1649.006 kb on - strand, within A4249_RS08200at 1649.006 kb on - strand, within A4249_RS08200

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,645,107 + A4249_RS08185 0.81 +1.2
1,645,107 + A4249_RS08185 0.81 +0.8
1,645,107 + A4249_RS08185 0.81 +0.6
1,645,107 + A4249_RS08185 0.81 +0.4
1,645,241 + +0.8
1,648,285 + -0.1
1,648,318 + +0.2
1,648,318 + +0.1
1,648,318 + -0.1
1,648,318 + -0.3
1,648,318 + -0.3
1,648,318 + +0.1
1,648,318 + -0.2
1,648,318 + -0.3
1,648,319 - +0.1
1,648,319 - -0.1
1,648,319 - -0.2
1,648,319 - +0.4
1,648,319 - +0.2
1,648,319 - -0.0
1,648,319 - -0.3
1,648,319 - +0.1
1,648,319 - -0.3
1,648,320 + +0.1
1,648,321 - -0.1
1,648,321 - -0.1
1,648,321 - +0.1
1,648,573 + A4249_RS08200 0.24 +0.1
1,648,573 + A4249_RS08200 0.24 -0.2
1,648,573 + A4249_RS08200 0.24 -0.1
1,648,574 - A4249_RS08200 0.24 +0.1
1,648,589 + A4249_RS08200 0.25 -0.2
1,648,589 + A4249_RS08200 0.25 -0.1
1,648,589 + A4249_RS08200 0.25 -0.2
1,648,590 - A4249_RS08200 0.26 -0.1
1,648,773 + A4249_RS08200 0.38 -0.3
1,648,774 - A4249_RS08200 0.38 +0.1
1,648,774 - A4249_RS08200 0.38 +0.1
1,648,774 - A4249_RS08200 0.38 -0.0
1,648,774 - A4249_RS08200 0.38 +0.1
1,648,811 - A4249_RS08200 0.40 -0.3
1,648,811 - A4249_RS08200 0.40 -0.1
1,648,892 - A4249_RS08200 0.46 -0.2
1,649,006 - A4249_RS08200 0.53 +0.0
1,649,006 - A4249_RS08200 0.53 -0.4

Or see this region's nucleotide sequence