Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08005

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07995 and A4249_RS08000 are separated by 46 nucleotidesA4249_RS08000 and A4249_RS08005 are separated by 3 nucleotidesA4249_RS08005 and A4249_RS08010 are separated by 132 nucleotidesA4249_RS08010 and A4249_RS08015 are separated by 78 nucleotides A4249_RS07995: A4249_RS07995 - type II 3-dehydroquinate dehydratase, at 1,600,289 to 1,600,735 _RS07995 A4249_RS08000: A4249_RS08000 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,600,782 to 1,601,273 _RS08000 A4249_RS08005: A4249_RS08005 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,601,277 to 1,602,629 _RS08005 A4249_RS08010: A4249_RS08010 - leucyl/phenylalanyl-tRNA--protein transferase, at 1,602,762 to 1,603,442 _RS08010 A4249_RS08015: A4249_RS08015 - signal peptidase I, at 1,603,521 to 1,604,285 _RS08015 Position (kb) 1601 1602 1603Strain fitness (log2 ratio) -2 -1 0 1 2at 1600.364 kb on + strand, within A4249_RS07995at 1600.364 kb on + strand, within A4249_RS07995at 1600.364 kb on + strand, within A4249_RS07995at 1600.531 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995at 1602.669 kb on + strandat 1602.670 kb on - strandat 1602.713 kb on + strandat 1602.756 kb on + strandat 1602.756 kb on + strandat 1602.757 kb on - strandat 1602.932 kb on + strand, within A4249_RS08010at 1602.932 kb on + strand, within A4249_RS08010at 1602.933 kb on - strand, within A4249_RS08010at 1602.933 kb on - strand, within A4249_RS08010at 1602.958 kb on + strand, within A4249_RS08010at 1603.080 kb on + strand, within A4249_RS08010at 1603.117 kb on + strand, within A4249_RS08010at 1603.117 kb on + strand, within A4249_RS08010at 1603.117 kb on + strand, within A4249_RS08010at 1603.117 kb on + strand, within A4249_RS08010at 1603.117 kb on + strand, within A4249_RS08010at 1603.118 kb on - strand, within A4249_RS08010at 1603.155 kb on + strand, within A4249_RS08010at 1603.155 kb on + strand, within A4249_RS08010at 1603.156 kb on - strand, within A4249_RS08010at 1603.156 kb on - strand, within A4249_RS08010at 1603.162 kb on + strand, within A4249_RS08010at 1603.163 kb on - strand, within A4249_RS08010at 1603.163 kb on - strand, within A4249_RS08010at 1603.163 kb on - strand, within A4249_RS08010at 1603.231 kb on + strand, within A4249_RS08010at 1603.231 kb on + strand, within A4249_RS08010at 1603.232 kb on - strand, within A4249_RS08010at 1603.341 kb on + strand, within A4249_RS08010at 1603.429 kb on + strandat 1603.430 kb on - strandat 1603.440 kb on + strandat 1603.440 kb on + strandat 1603.440 kb on + strandat 1603.440 kb on + strandat 1603.441 kb on - strandat 1603.460 kb on + strandat 1603.460 kb on + strandat 1603.461 kb on - strandat 1603.461 kb on - strandat 1603.461 kb on - strandat 1603.461 kb on - strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.480 kb on + strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strandat 1603.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,600,364 + A4249_RS07995 0.17 -1.5
1,600,364 + A4249_RS07995 0.17 +0.1
1,600,364 + A4249_RS07995 0.17 -0.9
1,600,531 + A4249_RS07995 0.54 +1.1
1,600,634 + A4249_RS07995 0.77 +1.3
1,600,634 + A4249_RS07995 0.77 +1.9
1,600,634 + A4249_RS07995 0.77 -0.7
1,602,669 + +0.4
1,602,670 - -0.9
1,602,713 + +0.2
1,602,756 + +0.3
1,602,756 + +0.7
1,602,757 - +0.5
1,602,932 + A4249_RS08010 0.25 +1.2
1,602,932 + A4249_RS08010 0.25 -0.5
1,602,933 - A4249_RS08010 0.25 -0.2
1,602,933 - A4249_RS08010 0.25 -0.2
1,602,958 + A4249_RS08010 0.29 +0.5
1,603,080 + A4249_RS08010 0.47 -0.1
1,603,117 + A4249_RS08010 0.52 -0.8
1,603,117 + A4249_RS08010 0.52 -0.2
1,603,117 + A4249_RS08010 0.52 -0.7
1,603,117 + A4249_RS08010 0.52 -1.5
1,603,117 + A4249_RS08010 0.52 +0.7
1,603,118 - A4249_RS08010 0.52 +0.2
1,603,155 + A4249_RS08010 0.58 +1.1
1,603,155 + A4249_RS08010 0.58 -0.7
1,603,156 - A4249_RS08010 0.58 +0.5
1,603,156 - A4249_RS08010 0.58 +0.1
1,603,162 + A4249_RS08010 0.59 +0.2
1,603,163 - A4249_RS08010 0.59 -1.3
1,603,163 - A4249_RS08010 0.59 -1.8
1,603,163 - A4249_RS08010 0.59 +0.3
1,603,231 + A4249_RS08010 0.69 -0.0
1,603,231 + A4249_RS08010 0.69 -0.2
1,603,232 - A4249_RS08010 0.69 -1.2
1,603,341 + A4249_RS08010 0.85 -0.3
1,603,429 + -0.4
1,603,430 - +0.3
1,603,440 + +0.3
1,603,440 + -0.0
1,603,440 + +0.0
1,603,440 + -0.8
1,603,441 - -0.4
1,603,460 + +0.1
1,603,460 + +1.0
1,603,461 - -0.4
1,603,461 - +0.8
1,603,461 - -0.5
1,603,461 - +0.6
1,603,480 + +0.3
1,603,480 + -0.7
1,603,480 + +0.5
1,603,480 + -0.3
1,603,480 + -0.5
1,603,480 + +1.0
1,603,480 + -0.7
1,603,480 + +0.1
1,603,481 - +0.7
1,603,481 - +0.9
1,603,481 - +1.0
1,603,481 - -0.0
1,603,481 - +0.3
1,603,481 - -0.4
1,603,481 - -0.0
1,603,481 - +0.0

Or see this region's nucleotide sequence