Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07075

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07060 and A4249_RS16780 overlap by 1 nucleotidesA4249_RS16780 and A4249_RS07070 overlap by 4 nucleotidesA4249_RS07070 and A4249_RS07075 overlap by 4 nucleotidesA4249_RS07075 and A4249_RS07080 are separated by 548 nucleotides A4249_RS07060: A4249_RS07060 - single-stranded DNA-binding protein, at 1,419,465 to 1,419,917 _RS07060 A4249_RS16780: A4249_RS16780 - HNH endonuclease, at 1,419,917 to 1,420,318 _RS16780 A4249_RS07070: A4249_RS07070 - hypothetical protein, at 1,420,315 to 1,420,665 _RS07070 A4249_RS07075: A4249_RS07075 - helix-turn-helix domain-containing protein, at 1,420,662 to 1,421,072 _RS07075 A4249_RS07080: A4249_RS07080 - hypothetical protein, at 1,421,621 to 1,422,301 _RS07080 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -2 -1 0 1at 1419.839 kb on + strand, within A4249_RS07060at 1419.839 kb on + strand, within A4249_RS07060at 1419.850 kb on - strand, within A4249_RS07060at 1419.868 kb on - strand, within A4249_RS07060at 1419.888 kb on + strandat 1419.977 kb on + strand, within A4249_RS16780at 1419.977 kb on + strand, within A4249_RS16780at 1419.977 kb on + strand, within A4249_RS16780at 1419.978 kb on - strand, within A4249_RS16780at 1419.978 kb on - strand, within A4249_RS16780at 1420.052 kb on + strand, within A4249_RS16780at 1420.053 kb on - strand, within A4249_RS16780at 1420.067 kb on + strand, within A4249_RS16780at 1420.067 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.127 kb on + strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.128 kb on - strand, within A4249_RS16780at 1420.396 kb on + strand, within A4249_RS07070at 1420.396 kb on + strand, within A4249_RS07070at 1420.397 kb on - strand, within A4249_RS07070at 1420.457 kb on - strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.458 kb on + strand, within A4249_RS07070at 1420.459 kb on - strand, within A4249_RS07070at 1420.459 kb on - strand, within A4249_RS07070at 1420.459 kb on - strand, within A4249_RS07070at 1420.459 kb on - strand, within A4249_RS07070at 1420.459 kb on - strand, within A4249_RS07070at 1420.668 kb on + strandat 1420.668 kb on + strandat 1420.669 kb on - strandat 1420.669 kb on - strandat 1420.669 kb on - strandat 1420.669 kb on - strandat 1420.669 kb on - strandat 1420.689 kb on + strandat 1420.689 kb on + strandat 1420.689 kb on + strandat 1420.689 kb on + strandat 1420.690 kb on - strandat 1420.690 kb on - strandat 1420.690 kb on - strandat 1420.690 kb on - strandat 1420.752 kb on + strand, within A4249_RS07075at 1420.752 kb on + strand, within A4249_RS07075at 1420.752 kb on + strand, within A4249_RS07075at 1420.752 kb on + strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.753 kb on - strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.758 kb on + strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.759 kb on - strand, within A4249_RS07075at 1420.761 kb on + strand, within A4249_RS07075at 1420.762 kb on - strand, within A4249_RS07075at 1420.813 kb on - strand, within A4249_RS07075at 1420.813 kb on - strand, within A4249_RS07075at 1420.923 kb on - strand, within A4249_RS07075at 1420.923 kb on - strand, within A4249_RS07075at 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.332 kb on - strandat 1421.333 kb on + strandat 1421.405 kb on - strandat 1421.679 kb on + strandat 1421.679 kb on + strandat 1421.680 kb on - strandat 1421.680 kb on - strandat 1421.841 kb on + strand, within A4249_RS07080at 1421.888 kb on + strand, within A4249_RS07080at 1421.888 kb on + strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.889 kb on - strand, within A4249_RS07080at 1421.946 kb on - strand, within A4249_RS07080

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,419,839 + A4249_RS07060 0.83 +0.2
1,419,839 + A4249_RS07060 0.83 +1.3
1,419,850 - A4249_RS07060 0.85 +0.3
1,419,868 - A4249_RS07060 0.89 +1.1
1,419,888 + +1.5
1,419,977 + A4249_RS16780 0.15 -0.2
1,419,977 + A4249_RS16780 0.15 -0.4
1,419,977 + A4249_RS16780 0.15 +0.5
1,419,978 - A4249_RS16780 0.15 +0.5
1,419,978 - A4249_RS16780 0.15 -0.4
1,420,052 + A4249_RS16780 0.34 +0.1
1,420,053 - A4249_RS16780 0.34 +0.1
1,420,067 + A4249_RS16780 0.37 +0.5
1,420,067 + A4249_RS16780 0.37 +0.1
1,420,127 + A4249_RS16780 0.52 +0.2
1,420,127 + A4249_RS16780 0.52 +1.1
1,420,127 + A4249_RS16780 0.52 -1.4
1,420,127 + A4249_RS16780 0.52 -0.0
1,420,127 + A4249_RS16780 0.52 -0.0
1,420,127 + A4249_RS16780 0.52 +1.1
1,420,127 + A4249_RS16780 0.52 +0.9
1,420,128 - A4249_RS16780 0.52 -0.8
1,420,128 - A4249_RS16780 0.52 -0.8
1,420,128 - A4249_RS16780 0.52 -1.1
1,420,128 - A4249_RS16780 0.52 +0.5
1,420,128 - A4249_RS16780 0.52 +1.4
1,420,396 + A4249_RS07070 0.23 +0.1
1,420,396 + A4249_RS07070 0.23 +1.4
1,420,397 - A4249_RS07070 0.23 -0.4
1,420,457 - A4249_RS07070 0.40 +0.7
1,420,458 + A4249_RS07070 0.41 +0.0
1,420,458 + A4249_RS07070 0.41 +0.1
1,420,458 + A4249_RS07070 0.41 -0.1
1,420,458 + A4249_RS07070 0.41 -0.8
1,420,458 + A4249_RS07070 0.41 +0.0
1,420,458 + A4249_RS07070 0.41 +1.1
1,420,458 + A4249_RS07070 0.41 +0.7
1,420,458 + A4249_RS07070 0.41 -0.5
1,420,459 - A4249_RS07070 0.41 -0.2
1,420,459 - A4249_RS07070 0.41 -2.0
1,420,459 - A4249_RS07070 0.41 +0.3
1,420,459 - A4249_RS07070 0.41 +1.3
1,420,459 - A4249_RS07070 0.41 +0.3
1,420,668 + +0.8
1,420,668 + +0.6
1,420,669 - +0.7
1,420,669 - -0.3
1,420,669 - -0.5
1,420,669 - -0.8
1,420,669 - +0.2
1,420,689 + +0.1
1,420,689 + -0.1
1,420,689 + +0.3
1,420,689 + -1.3
1,420,690 - +0.6
1,420,690 - -0.0
1,420,690 - +0.3
1,420,690 - +0.6
1,420,752 + A4249_RS07075 0.22 -0.7
1,420,752 + A4249_RS07075 0.22 -1.9
1,420,752 + A4249_RS07075 0.22 +1.2
1,420,752 + A4249_RS07075 0.22 +0.8
1,420,753 - A4249_RS07075 0.22 +0.6
1,420,753 - A4249_RS07075 0.22 +1.1
1,420,753 - A4249_RS07075 0.22 -0.2
1,420,753 - A4249_RS07075 0.22 +0.3
1,420,753 - A4249_RS07075 0.22 -0.1
1,420,753 - A4249_RS07075 0.22 +0.5
1,420,753 - A4249_RS07075 0.22 +0.1
1,420,753 - A4249_RS07075 0.22 -0.3
1,420,758 + A4249_RS07075 0.23 +0.0
1,420,758 + A4249_RS07075 0.23 -2.3
1,420,758 + A4249_RS07075 0.23 -0.1
1,420,758 + A4249_RS07075 0.23 +0.3
1,420,758 + A4249_RS07075 0.23 +0.9
1,420,758 + A4249_RS07075 0.23 -0.7
1,420,759 - A4249_RS07075 0.24 +0.1
1,420,759 - A4249_RS07075 0.24 -0.3
1,420,759 - A4249_RS07075 0.24 +0.6
1,420,759 - A4249_RS07075 0.24 -0.3
1,420,759 - A4249_RS07075 0.24 -0.5
1,420,759 - A4249_RS07075 0.24 +0.8
1,420,759 - A4249_RS07075 0.24 +0.1
1,420,759 - A4249_RS07075 0.24 +0.3
1,420,759 - A4249_RS07075 0.24 +1.0
1,420,759 - A4249_RS07075 0.24 -0.5
1,420,761 + A4249_RS07075 0.24 -0.5
1,420,762 - A4249_RS07075 0.24 -0.6
1,420,813 - A4249_RS07075 0.37 -0.0
1,420,813 - A4249_RS07075 0.37 -0.5
1,420,923 - A4249_RS07075 0.64 +0.7
1,420,923 - A4249_RS07075 0.64 -1.3
1,421,332 - +0.4
1,421,332 - -0.7
1,421,332 - +0.2
1,421,332 - -0.5
1,421,332 - +0.2
1,421,332 - +0.1
1,421,332 - +0.0
1,421,333 + +0.9
1,421,405 - -0.0
1,421,679 + -0.9
1,421,679 + -0.4
1,421,680 - -0.3
1,421,680 - +0.1
1,421,841 + A4249_RS07080 0.32 +1.0
1,421,888 + A4249_RS07080 0.39 +1.3
1,421,888 + A4249_RS07080 0.39 -0.4
1,421,889 - A4249_RS07080 0.39 +0.8
1,421,889 - A4249_RS07080 0.39 +0.2
1,421,889 - A4249_RS07080 0.39 -0.0
1,421,889 - A4249_RS07080 0.39 -0.1
1,421,889 - A4249_RS07080 0.39 +0.9
1,421,946 - A4249_RS07080 0.48 +0.3

Or see this region's nucleotide sequence