Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05925

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05920 and A4249_RS05925 are separated by 101 nucleotidesA4249_RS05925 and A4249_RS05930 are separated by 2 nucleotidesA4249_RS05930 and A4249_RS05935 are separated by 262 nucleotides A4249_RS05920: A4249_RS05920 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,210,846 to 1,211,796 _RS05920 A4249_RS05925: A4249_RS05925 - 30S ribosomal protein S9, at 1,211,898 to 1,212,392 _RS05925 A4249_RS05930: A4249_RS05930 - 50S ribosomal protein L13, at 1,212,395 to 1,212,871 _RS05930 A4249_RS05935: A4249_RS05935 - DUF839 domain-containing protein, at 1,213,134 to 1,214,519 _RS05935 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -2 -1 0 1at 1211.084 kb on + strand, within A4249_RS05920at 1211.084 kb on + strand, within A4249_RS05920at 1211.084 kb on + strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.085 kb on - strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.180 kb on + strand, within A4249_RS05920at 1211.181 kb on - strand, within A4249_RS05920at 1211.200 kb on - strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.224 kb on + strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.225 kb on - strand, within A4249_RS05920at 1211.273 kb on + strand, within A4249_RS05920at 1211.273 kb on + strand, within A4249_RS05920at 1211.282 kb on + strand, within A4249_RS05920at 1211.282 kb on + strand, within A4249_RS05920at 1211.357 kb on + strand, within A4249_RS05920at 1211.387 kb on + strand, within A4249_RS05920at 1211.387 kb on + strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.388 kb on - strand, within A4249_RS05920at 1211.450 kb on + strand, within A4249_RS05920at 1211.450 kb on + strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.526 kb on - strand, within A4249_RS05920at 1211.823 kb on - strandat 1211.823 kb on - strandat 1213.070 kb on + strandat 1213.071 kb on - strandat 1213.092 kb on + strandat 1213.093 kb on - strandat 1213.093 kb on - strandat 1213.094 kb on + strandat 1213.094 kb on + strandat 1213.094 kb on + strandat 1213.095 kb on - strandat 1213.095 kb on - strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.311 kb on + strand, within A4249_RS05935at 1213.312 kb on - strand, within A4249_RS05935at 1213.312 kb on - strand, within A4249_RS05935at 1213.338 kb on - strand, within A4249_RS05935

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,211,084 + A4249_RS05920 0.25 -0.0
1,211,084 + A4249_RS05920 0.25 -0.3
1,211,084 + A4249_RS05920 0.25 +0.1
1,211,085 - A4249_RS05920 0.25 +0.5
1,211,085 - A4249_RS05920 0.25 -0.7
1,211,085 - A4249_RS05920 0.25 +0.0
1,211,085 - A4249_RS05920 0.25 +0.1
1,211,180 + A4249_RS05920 0.35 +0.4
1,211,180 + A4249_RS05920 0.35 -0.1
1,211,180 + A4249_RS05920 0.35 +0.1
1,211,180 + A4249_RS05920 0.35 -0.5
1,211,181 - A4249_RS05920 0.35 +0.1
1,211,200 - A4249_RS05920 0.37 -1.1
1,211,224 + A4249_RS05920 0.40 +0.2
1,211,224 + A4249_RS05920 0.40 +0.3
1,211,224 + A4249_RS05920 0.40 +0.3
1,211,224 + A4249_RS05920 0.40 -0.0
1,211,224 + A4249_RS05920 0.40 -0.4
1,211,224 + A4249_RS05920 0.40 -0.5
1,211,224 + A4249_RS05920 0.40 -0.2
1,211,224 + A4249_RS05920 0.40 -0.1
1,211,224 + A4249_RS05920 0.40 -0.0
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,225 - A4249_RS05920 0.40 -0.3
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 -0.0
1,211,225 - A4249_RS05920 0.40 -0.0
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 -0.4
1,211,225 - A4249_RS05920 0.40 +0.3
1,211,225 - A4249_RS05920 0.40 +0.1
1,211,225 - A4249_RS05920 0.40 -0.1
1,211,225 - A4249_RS05920 0.40 +0.6
1,211,225 - A4249_RS05920 0.40 +0.2
1,211,225 - A4249_RS05920 0.40 -0.3
1,211,225 - A4249_RS05920 0.40 +0.0
1,211,225 - A4249_RS05920 0.40 +0.1
1,211,225 - A4249_RS05920 0.40 -0.2
1,211,273 + A4249_RS05920 0.45 +0.4
1,211,273 + A4249_RS05920 0.45 -0.4
1,211,282 + A4249_RS05920 0.46 -0.7
1,211,282 + A4249_RS05920 0.46 -0.1
1,211,357 + A4249_RS05920 0.54 -0.4
1,211,387 + A4249_RS05920 0.57 +0.1
1,211,387 + A4249_RS05920 0.57 -0.6
1,211,388 - A4249_RS05920 0.57 -0.5
1,211,388 - A4249_RS05920 0.57 -0.1
1,211,388 - A4249_RS05920 0.57 +1.4
1,211,388 - A4249_RS05920 0.57 -0.1
1,211,450 + A4249_RS05920 0.64 +0.4
1,211,450 + A4249_RS05920 0.64 -0.0
1,211,451 - A4249_RS05920 0.64 +0.1
1,211,451 - A4249_RS05920 0.64 -0.2
1,211,451 - A4249_RS05920 0.64 +0.9
1,211,525 + A4249_RS05920 0.71 +0.1
1,211,525 + A4249_RS05920 0.71 +0.8
1,211,525 + A4249_RS05920 0.71 -0.2
1,211,525 + A4249_RS05920 0.71 +0.5
1,211,526 - A4249_RS05920 0.72 +0.1
1,211,823 - -0.1
1,211,823 - -0.1
1,213,070 + -2.0
1,213,071 - +0.1
1,213,092 + -0.3
1,213,093 - +0.6
1,213,093 - +0.1
1,213,094 + +0.3
1,213,094 + +0.1
1,213,094 + -1.4
1,213,095 - -0.0
1,213,095 - +0.3
1,213,233 + -0.1
1,213,233 + -0.3
1,213,233 + +0.9
1,213,233 + -0.3
1,213,233 + -0.3
1,213,233 + +1.0
1,213,233 + +0.0
1,213,233 + +0.2
1,213,233 + +0.7
1,213,233 + +0.4
1,213,233 + -1.7
1,213,233 + +0.6
1,213,234 - +0.3
1,213,234 - -1.3
1,213,234 - -0.5
1,213,234 - +0.2
1,213,234 - -0.3
1,213,234 - -0.3
1,213,234 - -0.9
1,213,234 - -0.4
1,213,234 - +0.1
1,213,311 + A4249_RS05935 0.13 -0.5
1,213,312 - A4249_RS05935 0.13 +0.2
1,213,312 - A4249_RS05935 0.13 -0.8
1,213,338 - A4249_RS05935 0.15 -0.1

Or see this region's nucleotide sequence