Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05525

Experiment: Guanine 0.6617 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS05515 and A4249_RS05520 are separated by 4 nucleotidesA4249_RS05520 and A4249_RS05525 overlap by 4 nucleotidesA4249_RS05525 and A4249_RS05530 are separated by 55 nucleotidesA4249_RS05530 and A4249_RS05535 overlap by 1 nucleotides A4249_RS05515: A4249_RS05515 - orotate phosphoribosyltransferase, at 1,126,774 to 1,127,358 _RS05515 A4249_RS05520: A4249_RS05520 - pyridoxine 5'-phosphate synthase, at 1,127,363 to 1,128,103 _RS05520 A4249_RS05525: A4249_RS05525 - holo-ACP synthase, at 1,128,100 to 1,128,501 _RS05525 A4249_RS05530: A4249_RS05530 - signal peptidase I, at 1,128,557 to 1,129,450 _RS05530 A4249_RS05535: A4249_RS05535 - ribonuclease III, at 1,129,450 to 1,130,160 _RS05535 Position (kb) 1128 1129Strain fitness (log2 ratio) -2 -1 0 1at 1127.356 kb on + strandat 1128.499 kb on + strandat 1128.508 kb on + strandat 1128.508 kb on + strandat 1128.508 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strandat 1128.510 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
remove
1,127,356 + -0.1
1,128,499 + +0.1
1,128,508 + +0.5
1,128,508 + -1.9
1,128,508 + +0.0
1,128,510 + +1.2
1,128,510 + -0.5
1,128,510 + +0.3
1,128,510 + -0.2
1,128,510 + -0.1
1,128,510 + -0.7
1,128,510 + +0.1

Or see this region's nucleotide sequence