Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03690

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03680 and A4249_RS03685 are separated by 24 nucleotidesA4249_RS03685 and A4249_RS03690 overlap by 11 nucleotidesA4249_RS03690 and A4249_RS03695 are separated by 69 nucleotidesA4249_RS03695 and A4249_RS03700 are separated by 79 nucleotides A4249_RS03680: A4249_RS03680 - DUF6249 domain-containing protein, at 777,321 to 777,719 _RS03680 A4249_RS03685: A4249_RS03685 - sigma-70 family RNA polymerase sigma factor, at 777,744 to 778,301 _RS03685 A4249_RS03690: A4249_RS03690 - hypothetical protein, at 778,291 to 778,707 _RS03690 A4249_RS03695: A4249_RS03695 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 778,777 to 779,613 _RS03695 A4249_RS03700: A4249_RS03700 - tetratricopeptide repeat protein, at 779,693 to 780,493 _RS03700 Position (kb) 778 779Strain fitness (log2 ratio) -2 -1 0 1at 777.313 kb on + strandat 777.314 kb on - strandat 777.314 kb on - strandat 777.371 kb on + strand, within A4249_RS03680at 777.371 kb on + strand, within A4249_RS03680at 777.372 kb on - strand, within A4249_RS03680at 777.405 kb on + strand, within A4249_RS03680at 777.405 kb on + strand, within A4249_RS03680at 777.406 kb on - strand, within A4249_RS03680at 777.605 kb on + strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.656 kb on + strand, within A4249_RS03680at 777.657 kb on - strand, within A4249_RS03680at 777.657 kb on - strand, within A4249_RS03680at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.999 kb on + strand, within A4249_RS03685at 778.000 kb on - strand, within A4249_RS03685at 778.029 kb on + strand, within A4249_RS03685at 778.029 kb on + strand, within A4249_RS03685at 778.029 kb on + strand, within A4249_RS03685at 778.029 kb on + strand, within A4249_RS03685at 778.029 kb on + strand, within A4249_RS03685at 778.030 kb on - strand, within A4249_RS03685at 778.030 kb on - strand, within A4249_RS03685at 778.030 kb on - strand, within A4249_RS03685at 778.030 kb on - strand, within A4249_RS03685at 778.030 kb on - strand, within A4249_RS03685at 778.239 kb on - strand, within A4249_RS03685at 778.500 kb on + strand, within A4249_RS03690at 778.501 kb on - strand, within A4249_RS03690at 778.745 kb on + strandat 778.745 kb on + strandat 778.745 kb on + strandat 778.745 kb on + strandat 778.745 kb on + strandat 778.746 kb on - strandat 778.746 kb on - strandat 779.646 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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777,313 + -0.9
777,314 - -0.7
777,314 - -0.5
777,371 + A4249_RS03680 0.13 +0.5
777,371 + A4249_RS03680 0.13 +1.1
777,372 - A4249_RS03680 0.13 +0.3
777,405 + A4249_RS03680 0.21 -0.3
777,405 + A4249_RS03680 0.21 -0.0
777,406 - A4249_RS03680 0.21 -1.7
777,605 + A4249_RS03680 0.71 -1.1
777,606 - A4249_RS03680 0.71 -0.1
777,606 - A4249_RS03680 0.71 -0.7
777,606 - A4249_RS03680 0.71 +0.1
777,606 - A4249_RS03680 0.71 +1.1
777,656 + A4249_RS03680 0.84 -0.7
777,657 - A4249_RS03680 0.84 +0.3
777,657 - A4249_RS03680 0.84 -1.5
777,816 + A4249_RS03685 0.13 -0.3
777,816 + A4249_RS03685 0.13 -0.5
777,816 + A4249_RS03685 0.13 -0.3
777,816 + A4249_RS03685 0.13 +0.7
777,816 + A4249_RS03685 0.13 +0.4
777,817 - A4249_RS03685 0.13 -0.6
777,817 - A4249_RS03685 0.13 +0.2
777,817 - A4249_RS03685 0.13 +0.2
777,817 - A4249_RS03685 0.13 +0.6
777,999 + A4249_RS03685 0.46 +0.1
778,000 - A4249_RS03685 0.46 +0.3
778,029 + A4249_RS03685 0.51 -0.1
778,029 + A4249_RS03685 0.51 +0.5
778,029 + A4249_RS03685 0.51 +0.7
778,029 + A4249_RS03685 0.51 -0.2
778,029 + A4249_RS03685 0.51 -2.1
778,030 - A4249_RS03685 0.51 +0.5
778,030 - A4249_RS03685 0.51 +0.1
778,030 - A4249_RS03685 0.51 -0.4
778,030 - A4249_RS03685 0.51 -2.1
778,030 - A4249_RS03685 0.51 +0.3
778,239 - A4249_RS03685 0.89 +0.6
778,500 + A4249_RS03690 0.50 -0.8
778,501 - A4249_RS03690 0.50 -0.8
778,745 + +0.2
778,745 + -0.9
778,745 + +0.2
778,745 + -1.3
778,745 + -0.1
778,746 - -0.3
778,746 - +0.1
779,646 + +0.0

Or see this region's nucleotide sequence