Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03205

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03190 and A4249_RS03195 are separated by 199 nucleotidesA4249_RS03195 and A4249_RS03200 are separated by 65 nucleotidesA4249_RS03200 and A4249_RS03205 are separated by 10 nucleotidesA4249_RS03205 and A4249_RS03210 are separated by 16 nucleotidesA4249_RS03210 and A4249_RS03215 are separated by 87 nucleotides A4249_RS03190: A4249_RS03190 - ATPase, T2SS/T4P/T4SS family, at 672,008 to 672,340 _RS03190 A4249_RS03195: A4249_RS03195 - toxin-antitoxin system, antitoxin component, at 672,540 to 672,839 _RS03195 A4249_RS03200: A4249_RS03200 - ammonium transporter family protein, at 672,905 to 673,132 _RS03200 A4249_RS03205: A4249_RS03205 - copper resistance protein CopC, at 673,143 to 673,526 _RS03205 A4249_RS03210: A4249_RS03210 - copper resistance protein B, at 673,543 to 673,956 _RS03210 A4249_RS03215: A4249_RS03215 - DUF4198 domain-containing protein, at 674,044 to 674,829 _RS03215 Position (kb) 673 674Strain fitness (log2 ratio) -2 -1 0 1 2at 672.261 kb on + strand, within A4249_RS03190at 672.262 kb on - strand, within A4249_RS03190at 672.262 kb on - strand, within A4249_RS03190at 672.444 kb on - strandat 672.474 kb on + strandat 672.474 kb on + strandat 672.474 kb on + strandat 672.475 kb on - strandat 672.475 kb on - strandat 672.475 kb on - strandat 672.475 kb on - strandat 672.475 kb on - strandat 672.549 kb on + strandat 672.549 kb on + strandat 672.549 kb on + strandat 672.550 kb on - strandat 672.550 kb on - strandat 672.550 kb on - strandat 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.544 kb on + strandat 673.585 kb on + strand, within A4249_RS03210at 673.585 kb on + strand, within A4249_RS03210at 673.586 kb on - strand, within A4249_RS03210at 673.610 kb on + strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.655 kb on + strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.812 kb on - strand, within A4249_RS03210at 673.812 kb on - strand, within A4249_RS03210at 673.883 kb on + strand, within A4249_RS03210at 673.883 kb on + strand, within A4249_RS03210at 673.884 kb on - strand, within A4249_RS03210at 673.923 kb on + strandat 673.923 kb on + strandat 673.923 kb on + strandat 673.923 kb on + strandat 673.924 kb on - strandat 673.996 kb on + strandat 673.996 kb on + strandat 673.997 kb on - strandat 673.997 kb on - strandat 674.045 kb on + strandat 674.045 kb on + strandat 674.046 kb on - strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.123 kb on - strand, within A4249_RS03215at 674.123 kb on - strand, within A4249_RS03215at 674.123 kb on - strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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672,261 + A4249_RS03190 0.76 -0.6
672,262 - A4249_RS03190 0.76 +0.6
672,262 - A4249_RS03190 0.76 -0.4
672,444 - -1.4
672,474 + -1.0
672,474 + -0.4
672,474 + -0.0
672,475 - +0.0
672,475 - +0.1
672,475 - +0.6
672,475 - -0.6
672,475 - +0.0
672,549 + +0.4
672,549 + -2.0
672,549 + -0.1
672,550 - -0.3
672,550 - -0.9
672,550 - -1.1
673,216 + A4249_RS03205 0.19 -0.2
673,216 + A4249_RS03205 0.19 +0.2
673,216 + A4249_RS03205 0.19 +0.9
673,216 + A4249_RS03205 0.19 -0.3
673,216 + A4249_RS03205 0.19 +0.4
673,216 + A4249_RS03205 0.19 +0.6
673,217 - A4249_RS03205 0.19 +0.9
673,217 - A4249_RS03205 0.19 +1.9
673,217 - A4249_RS03205 0.19 -0.2
673,217 - A4249_RS03205 0.19 +1.0
673,217 - A4249_RS03205 0.19 -0.6
673,217 - A4249_RS03205 0.19 +0.3
673,217 - A4249_RS03205 0.19 -0.0
673,217 - A4249_RS03205 0.19 +0.2
673,217 - A4249_RS03205 0.19 +0.9
673,217 - A4249_RS03205 0.19 -0.4
673,544 + +0.7
673,585 + A4249_RS03210 0.10 -0.3
673,585 + A4249_RS03210 0.10 +0.4
673,586 - A4249_RS03210 0.10 +0.2
673,610 + A4249_RS03210 0.16 +0.1
673,611 - A4249_RS03210 0.16 -0.7
673,611 - A4249_RS03210 0.16 +1.4
673,611 - A4249_RS03210 0.16 +0.1
673,611 - A4249_RS03210 0.16 -1.4
673,611 - A4249_RS03210 0.16 -0.2
673,611 - A4249_RS03210 0.16 -0.2
673,611 - A4249_RS03210 0.16 +0.3
673,655 + A4249_RS03210 0.27 +0.1
673,683 - A4249_RS03210 0.34 +0.0
673,683 - A4249_RS03210 0.34 +0.5
673,683 - A4249_RS03210 0.34 -0.2
673,812 - A4249_RS03210 0.65 +0.0
673,812 - A4249_RS03210 0.65 +0.4
673,883 + A4249_RS03210 0.82 +0.8
673,883 + A4249_RS03210 0.82 -0.4
673,884 - A4249_RS03210 0.82 -0.3
673,923 + -0.7
673,923 + +0.9
673,923 + -1.5
673,923 + +0.4
673,924 - -1.0
673,996 + +0.4
673,996 + -1.0
673,997 - +0.7
673,997 - +0.9
674,045 + -0.5
674,045 + +0.3
674,046 - +0.7
674,118 + +0.8
674,118 + -2.5
674,118 + +0.6
674,118 + -2.1
674,118 + +0.2
674,118 + +0.0
674,118 + -1.1
674,119 - +0.2
674,119 - -0.0
674,119 - -0.8
674,119 - +0.8
674,119 - -0.6
674,119 - -0.1
674,119 - +0.8
674,119 - -0.2
674,119 - +1.0
674,123 - A4249_RS03215 0.10 +0.7
674,123 - A4249_RS03215 0.10 +0.1
674,123 - A4249_RS03215 0.10 -0.3
674,477 + A4249_RS03215 0.55 -1.0
674,477 + A4249_RS03215 0.55 +0.3
674,477 + A4249_RS03215 0.55 -0.6
674,477 + A4249_RS03215 0.55 +0.3
674,478 - A4249_RS03215 0.55 +0.3
674,478 - A4249_RS03215 0.55 +0.8
674,478 - A4249_RS03215 0.55 -0.3
674,478 - A4249_RS03215 0.55 +1.1

Or see this region's nucleotide sequence