Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betA and MCAODC_28280 are separated by 1 nucleotides MCAODC_28280 and MCAODC_28285 are separated by 430 nucleotides
MCAODC_28275: betA - choline dehydrogenase, at 2,405,557 to 2,407,245
betA
MCAODC_28280: MCAODC_28280 - hypothetical protein, at 2,407,247 to 2,407,498
_28280
MCAODC_28285: MCAODC_28285 - hypothetical protein, at 2,407,929 to 2,408,063
_28285
Position (kb)
2407
2408
2409 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2407.078 kb on - strand at 2407.078 kb on - strand at 2407.119 kb on + strand at 2407.211 kb on + strand at 2407.211 kb on + strand at 2407.271 kb on + strand at 2407.271 kb on + strand at 2407.304 kb on + strand, within MCAODC_28280 at 2407.333 kb on + strand, within MCAODC_28280 at 2407.334 kb on - strand, within MCAODC_28280 at 2407.359 kb on - strand, within MCAODC_28280 at 2407.359 kb on - strand, within MCAODC_28280 at 2407.390 kb on + strand, within MCAODC_28280 at 2407.393 kb on + strand, within MCAODC_28280 at 2407.393 kb on + strand, within MCAODC_28280 at 2407.394 kb on - strand, within MCAODC_28280 at 2407.394 kb on - strand, within MCAODC_28280 at 2407.498 kb on + strand at 2407.499 kb on - strand at 2407.611 kb on - strand at 2408.116 kb on - strand at 2408.214 kb on + strand at 2408.263 kb on + strand at 2408.264 kb on - strand at 2408.264 kb on - strand at 2408.307 kb on - strand at 2408.399 kb on + strand at 2408.399 kb on + strand at 2408.399 kb on + strand at 2408.399 kb on + strand at 2408.424 kb on - strand at 2408.446 kb on + strand at 2408.578 kb on + strand at 2408.688 kb on + strand at 2408.688 kb on + strand at 2408.689 kb on - strand at 2408.689 kb on - strand at 2408.695 kb on - strand at 2408.710 kb on + strand at 2408.710 kb on + strand at 2408.711 kb on - strand at 2408.711 kb on - strand at 2408.715 kb on + strand at 2408.715 kb on + strand at 2408.715 kb on + strand at 2408.716 kb on - strand at 2408.716 kb on - strand at 2408.716 kb on - strand at 2408.766 kb on + strand at 2408.766 kb on + strand at 2408.803 kb on + strand at 2408.803 kb on + strand at 2408.803 kb on + strand at 2408.804 kb on - strand at 2408.813 kb on + strand at 2408.814 kb on - strand at 2408.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,407,078 - +0.9 2,407,078 - +0.5 2,407,119 + -0.2 2,407,211 + +0.4 2,407,211 + +0.5 2,407,271 + +0.0 2,407,271 + +1.3 2,407,304 + MCAODC_28280 0.23 -4.1 2,407,333 + MCAODC_28280 0.34 +3.3 2,407,334 - MCAODC_28280 0.35 -1.5 2,407,359 - MCAODC_28280 0.44 -1.9 2,407,359 - MCAODC_28280 0.44 +0.5 2,407,390 + MCAODC_28280 0.57 +0.3 2,407,393 + MCAODC_28280 0.58 -0.5 2,407,393 + MCAODC_28280 0.58 +3.1 2,407,394 - MCAODC_28280 0.58 -0.8 2,407,394 - MCAODC_28280 0.58 -1.8 2,407,498 + +1.4 2,407,499 - +1.2 2,407,611 - +0.7 2,408,116 - -0.5 2,408,214 + +0.3 2,408,263 + -0.4 2,408,264 - -1.5 2,408,264 - -1.3 2,408,307 - +1.4 2,408,399 + -1.1 2,408,399 + -0.1 2,408,399 + +0.1 2,408,399 + -0.6 2,408,424 - -1.3 2,408,446 + +0.4 2,408,578 + -0.1 2,408,688 + -0.0 2,408,688 + -2.1 2,408,689 - -1.3 2,408,689 - +0.7 2,408,695 - -0.0 2,408,710 + -2.1 2,408,710 + +0.7 2,408,711 - -1.0 2,408,711 - -0.3 2,408,715 + +0.0 2,408,715 + -0.3 2,408,715 + -0.6 2,408,716 - +1.2 2,408,716 - +0.7 2,408,716 - +1.2 2,408,766 + +0.5 2,408,766 + +0.8 2,408,803 + +1.6 2,408,803 + +0.4 2,408,803 + +1.9 2,408,804 - +0.3 2,408,813 + -0.3 2,408,814 - -0.2 2,408,814 - +1.8
Or see this region's nucleotide sequence