Strain Fitness in Escherichia coli ECRC101 around MCAODC_26455

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeZ and ybeY overlap by 4 nucleotidesybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotides MCAODC_26445: ybeZ - PhoH-like protein, at 2,007,215 to 2,008,294 ybeZ MCAODC_26450: ybeY - rRNA maturation RNase YbeY, at 2,008,291 to 2,008,758 ybeY MCAODC_26455: corC - CNNM family magnesium/cobalt transport protein CorC, at 2,008,848 to 2,009,726 corC MCAODC_26460: lnt - apolipoprotein N-acyltransferase, at 2,009,751 to 2,011,289 lnt Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -2 -1 0 1at 2007.935 kb on + strand, within ybeZat 2007.935 kb on + strand, within ybeZat 2007.935 kb on + strand, within ybeZat 2007.935 kb on + strand, within ybeZat 2007.935 kb on + strand, within ybeZat 2007.935 kb on + strand, within ybeZat 2007.937 kb on + strand, within ybeZat 2007.949 kb on + strand, within ybeZat 2007.949 kb on + strand, within ybeZat 2008.087 kb on + strand, within ybeZat 2008.093 kb on + strand, within ybeZat 2008.104 kb on + strand, within ybeZat 2008.104 kb on + strand, within ybeZat 2008.104 kb on + strand, within ybeZat 2008.104 kb on + strand, within ybeZat 2008.738 kb on + strandat 2008.738 kb on + strandat 2008.820 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.871 kb on + strandat 2009.006 kb on + strand, within corCat 2009.263 kb on + strand, within corCat 2009.263 kb on + strand, within corCat 2009.291 kb on + strand, within corCat 2009.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,007,935 + ybeZ MCAODC_26445 0.67 +0.1
2,007,935 + ybeZ MCAODC_26445 0.67 +1.4
2,007,935 + ybeZ MCAODC_26445 0.67 -0.3
2,007,935 + ybeZ MCAODC_26445 0.67 +0.0
2,007,935 + ybeZ MCAODC_26445 0.67 -0.6
2,007,935 + ybeZ MCAODC_26445 0.67 -0.1
2,007,937 + ybeZ MCAODC_26445 0.67 -0.6
2,007,949 + ybeZ MCAODC_26445 0.68 -1.9
2,007,949 + ybeZ MCAODC_26445 0.68 -0.4
2,008,087 + ybeZ MCAODC_26445 0.81 +0.2
2,008,093 + ybeZ MCAODC_26445 0.81 -1.6
2,008,104 + ybeZ MCAODC_26445 0.82 +0.3
2,008,104 + ybeZ MCAODC_26445 0.82 +1.1
2,008,104 + ybeZ MCAODC_26445 0.82 -1.3
2,008,104 + ybeZ MCAODC_26445 0.82 -0.6
2,008,738 + +0.5
2,008,738 + +0.1
2,008,820 + +0.8
2,008,824 + +0.2
2,008,824 + -0.2
2,008,824 + +0.1
2,008,824 + -0.3
2,008,824 + -0.3
2,008,871 + +0.2
2,009,006 + corC MCAODC_26455 0.18 +0.1
2,009,263 + corC MCAODC_26455 0.47 -0.7
2,009,263 + corC MCAODC_26455 0.47 -1.7
2,009,291 + corC MCAODC_26455 0.50 +1.4
2,009,666 + +0.2

Or see this region's nucleotide sequence