Strain Fitness in Escherichia coli ECRC101 around MCAODC_20950

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_20945 and MCAODC_20950 are separated by 89 nucleotidesMCAODC_20950 and MCAODC_20955 overlap by 11 nucleotidesMCAODC_20955 and oRF82 overlap by 4 nucleotidesoRF82 and oRF81 are separated by 2 nucleotidesoRF81 and oRF80 overlap by 1 nucleotides MCAODC_20945: MCAODC_20945 - DUF676 domain-containing protein, at 995,204 to 996,427 _20945 MCAODC_20950: MCAODC_20950 - replication protein A, at 996,517 to 998,799 _20950 MCAODC_20955: MCAODC_20955 - Uncharacterized protein in GpA 5'region, at 998,789 to 999,064 _20955 MCAODC_20960: oRF82 - Uncharacterized protein in gpA 5'region, at 999,061 to 999,285 oRF82 MCAODC_20965: oRF81 - Uncharacterized protein in GpA 5'region, at 999,288 to 999,587 oRF81 MCAODC_20970: oRF80 - Uncharacterized protein in GpA 5'region, at 999,587 to 999,811 oRF80 Position (kb) 996 997 998 999Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 995.822 kb on - strand, within MCAODC_20945at 995.822 kb on - strand, within MCAODC_20945at 995.849 kb on - strand, within MCAODC_20945at 996.363 kb on - strandat 996.388 kb on + strandat 996.427 kb on + strandat 996.556 kb on - strandat 996.661 kb on - strandat 996.788 kb on - strand, within MCAODC_20950at 996.788 kb on - strand, within MCAODC_20950at 996.795 kb on + strand, within MCAODC_20950at 996.807 kb on + strand, within MCAODC_20950at 996.829 kb on + strand, within MCAODC_20950at 996.829 kb on + strand, within MCAODC_20950at 996.829 kb on + strand, within MCAODC_20950at 996.829 kb on + strand, within MCAODC_20950at 996.830 kb on - strand, within MCAODC_20950at 996.830 kb on - strand, within MCAODC_20950at 996.845 kb on - strand, within MCAODC_20950at 996.847 kb on + strand, within MCAODC_20950at 996.854 kb on - strand, within MCAODC_20950at 996.927 kb on + strand, within MCAODC_20950at 996.928 kb on - strand, within MCAODC_20950at 997.032 kb on + strand, within MCAODC_20950at 997.033 kb on - strand, within MCAODC_20950at 997.033 kb on - strand, within MCAODC_20950at 997.059 kb on - strand, within MCAODC_20950at 997.177 kb on - strand, within MCAODC_20950at 997.178 kb on + strand, within MCAODC_20950at 997.179 kb on - strand, within MCAODC_20950at 997.274 kb on - strand, within MCAODC_20950at 997.450 kb on - strand, within MCAODC_20950at 997.596 kb on + strand, within MCAODC_20950at 997.662 kb on + strand, within MCAODC_20950at 997.706 kb on + strand, within MCAODC_20950at 997.706 kb on + strand, within MCAODC_20950at 997.706 kb on + strand, within MCAODC_20950at 997.771 kb on - strand, within MCAODC_20950at 997.924 kb on - strand, within MCAODC_20950at 997.939 kb on - strand, within MCAODC_20950at 997.939 kb on - strand, within MCAODC_20950at 997.992 kb on + strand, within MCAODC_20950at 998.047 kb on - strand, within MCAODC_20950at 998.054 kb on + strand, within MCAODC_20950at 998.090 kb on - strand, within MCAODC_20950at 998.115 kb on + strand, within MCAODC_20950at 998.154 kb on + strand, within MCAODC_20950at 998.177 kb on + strand, within MCAODC_20950at 998.177 kb on + strand, within MCAODC_20950at 998.178 kb on - strand, within MCAODC_20950at 998.206 kb on - strand, within MCAODC_20950at 998.270 kb on + strand, within MCAODC_20950at 998.271 kb on - strand, within MCAODC_20950at 998.351 kb on + strand, within MCAODC_20950at 998.351 kb on + strand, within MCAODC_20950at 998.351 kb on + strand, within MCAODC_20950at 998.352 kb on - strand, within MCAODC_20950at 998.352 kb on - strand, within MCAODC_20950at 998.429 kb on + strand, within MCAODC_20950at 998.430 kb on - strand, within MCAODC_20950at 998.455 kb on + strand, within MCAODC_20950at 998.456 kb on - strand, within MCAODC_20950at 998.456 kb on - strand, within MCAODC_20950at 998.543 kb on + strand, within MCAODC_20950at 998.544 kb on - strand, within MCAODC_20950at 998.566 kb on - strand, within MCAODC_20950at 998.673 kb on + strandat 998.673 kb on + strandat 998.673 kb on + strandat 998.720 kb on + strandat 998.720 kb on + strandat 998.721 kb on - strandat 998.721 kb on - strandat 998.721 kb on - strandat 998.721 kb on - strandat 998.799 kb on + strandat 998.799 kb on + strandat 998.799 kb on + strandat 998.800 kb on - strandat 998.800 kb on - strandat 998.921 kb on + strand, within MCAODC_20955at 998.922 kb on - strand, within MCAODC_20955at 998.922 kb on - strand, within MCAODC_20955at 998.935 kb on - strand, within MCAODC_20955at 999.033 kb on + strand, within MCAODC_20955at 999.059 kb on - strandat 999.272 kb on - strandat 999.300 kb on - strandat 999.331 kb on + strand, within oRF81at 999.404 kb on + strand, within oRF81at 999.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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995,822 - MCAODC_20945 0.50 +0.7
995,822 - MCAODC_20945 0.50 -1.0
995,849 - MCAODC_20945 0.53 +0.8
996,363 - +0.2
996,388 + +1.1
996,427 + +1.3
996,556 - -0.2
996,661 - -0.2
996,788 - MCAODC_20950 0.12 -0.1
996,788 - MCAODC_20950 0.12 -3.2
996,795 + MCAODC_20950 0.12 +0.8
996,807 + MCAODC_20950 0.13 -0.1
996,829 + MCAODC_20950 0.14 +0.1
996,829 + MCAODC_20950 0.14 +0.2
996,829 + MCAODC_20950 0.14 +0.4
996,829 + MCAODC_20950 0.14 -0.4
996,830 - MCAODC_20950 0.14 -0.0
996,830 - MCAODC_20950 0.14 -0.4
996,845 - MCAODC_20950 0.14 +0.8
996,847 + MCAODC_20950 0.14 -0.3
996,854 - MCAODC_20950 0.15 -1.0
996,927 + MCAODC_20950 0.18 -0.1
996,928 - MCAODC_20950 0.18 +0.2
997,032 + MCAODC_20950 0.23 +1.1
997,033 - MCAODC_20950 0.23 +2.0
997,033 - MCAODC_20950 0.23 +0.3
997,059 - MCAODC_20950 0.24 +1.2
997,177 - MCAODC_20950 0.29 +0.6
997,178 + MCAODC_20950 0.29 -0.1
997,179 - MCAODC_20950 0.29 +1.3
997,274 - MCAODC_20950 0.33 +1.0
997,450 - MCAODC_20950 0.41 -0.1
997,596 + MCAODC_20950 0.47 -0.0
997,662 + MCAODC_20950 0.50 +2.2
997,706 + MCAODC_20950 0.52 -0.0
997,706 + MCAODC_20950 0.52 +0.5
997,706 + MCAODC_20950 0.52 -1.9
997,771 - MCAODC_20950 0.55 +0.2
997,924 - MCAODC_20950 0.62 -0.9
997,939 - MCAODC_20950 0.62 -1.0
997,939 - MCAODC_20950 0.62 +0.4
997,992 + MCAODC_20950 0.65 -0.4
998,047 - MCAODC_20950 0.67 +0.7
998,054 + MCAODC_20950 0.67 -0.5
998,090 - MCAODC_20950 0.69 -0.0
998,115 + MCAODC_20950 0.70 -0.3
998,154 + MCAODC_20950 0.72 +0.3
998,177 + MCAODC_20950 0.73 -0.8
998,177 + MCAODC_20950 0.73 +0.5
998,178 - MCAODC_20950 0.73 +0.2
998,206 - MCAODC_20950 0.74 -1.7
998,270 + MCAODC_20950 0.77 +0.1
998,271 - MCAODC_20950 0.77 -0.2
998,351 + MCAODC_20950 0.80 -0.8
998,351 + MCAODC_20950 0.80 +0.5
998,351 + MCAODC_20950 0.80 +1.1
998,352 - MCAODC_20950 0.80 -1.9
998,352 - MCAODC_20950 0.80 -0.6
998,429 + MCAODC_20950 0.84 +1.5
998,430 - MCAODC_20950 0.84 +0.9
998,455 + MCAODC_20950 0.85 +0.6
998,456 - MCAODC_20950 0.85 -1.6
998,456 - MCAODC_20950 0.85 +0.6
998,543 + MCAODC_20950 0.89 +0.5
998,544 - MCAODC_20950 0.89 -0.1
998,566 - MCAODC_20950 0.90 -0.6
998,673 + +0.4
998,673 + -0.6
998,673 + -1.4
998,720 + +1.9
998,720 + -1.0
998,721 - +0.3
998,721 - -0.4
998,721 - -0.7
998,721 - -0.2
998,799 + +1.0
998,799 + +1.2
998,799 + +0.5
998,800 - -0.7
998,800 - -0.5
998,921 + MCAODC_20955 0.48 +0.7
998,922 - MCAODC_20955 0.48 -1.1
998,922 - MCAODC_20955 0.48 -1.3
998,935 - MCAODC_20955 0.53 +0.0
999,033 + MCAODC_20955 0.88 -0.0
999,059 - +0.4
999,272 - -2.6
999,300 - -3.0
999,331 + oRF81 MCAODC_20965 0.14 +2.0
999,404 + oRF81 MCAODC_20965 0.39 +0.0
999,564 + +1.6

Or see this region's nucleotide sequence