Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeW and yeeX are separated by 897 nucleotides yeeX and yeeA are separated by 171 nucleotides
MCAODC_20350: yeeW - Protein YeeW, at 878,336 to 878,530
yeeW
MCAODC_20355: yeeX - DUF496 domain-containing protein, at 879,428 to 879,757
yeeX
MCAODC_20360: yeeA - Inner membrane protein YeeA, at 879,929 to 880,987
yeeA
Position (kb) 879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 878.431 kb on + strand, within yeeW at 878.432 kb on - strand, within yeeW at 878.434 kb on + strand, within yeeW at 878.434 kb on + strand, within yeeW at 878.434 kb on + strand, within yeeW at 878.504 kb on + strand, within yeeW at 878.504 kb on + strand, within yeeW at 878.505 kb on - strand, within yeeW at 878.505 kb on - strand, within yeeW at 878.505 kb on - strand, within yeeW at 878.528 kb on + strand at 878.529 kb on - strand at 878.551 kb on + strand at 878.552 kb on - strand at 878.553 kb on + strand at 878.554 kb on - strand at 878.593 kb on + strand at 878.593 kb on + strand at 878.720 kb on + strand at 878.778 kb on - strand at 878.782 kb on + strand at 878.782 kb on + strand at 878.783 kb on - strand at 878.785 kb on + strand at 878.785 kb on + strand at 878.832 kb on + strand at 878.833 kb on - strand at 878.963 kb on + strand at 878.963 kb on + strand at 879.119 kb on + strand at 879.170 kb on + strand at 879.171 kb on - strand at 879.204 kb on - strand at 879.252 kb on - strand at 879.270 kb on + strand at 879.282 kb on + strand at 879.372 kb on + strand at 879.372 kb on + strand at 879.372 kb on + strand at 879.373 kb on - strand at 879.460 kb on + strand at 879.523 kb on - strand, within yeeX at 879.607 kb on - strand, within yeeX at 879.698 kb on - strand, within yeeX at 879.762 kb on - strand at 879.764 kb on - strand at 879.825 kb on - strand at 879.825 kb on - strand at 879.831 kb on - strand at 879.831 kb on - strand at 879.869 kb on - strand at 879.874 kb on - strand at 879.881 kb on - strand at 879.930 kb on + strand at 880.005 kb on + strand at 880.005 kb on + strand at 880.006 kb on - strand at 880.006 kb on - strand at 880.006 kb on - strand at 880.006 kb on - strand at 880.006 kb on - strand at 880.006 kb on - strand at 880.012 kb on - strand at 880.012 kb on - strand at 880.121 kb on - strand, within yeeA at 880.128 kb on + strand, within yeeA at 880.155 kb on - strand, within yeeA at 880.258 kb on + strand, within yeeA at 880.296 kb on + strand, within yeeA at 880.296 kb on + strand, within yeeA at 880.297 kb on - strand, within yeeA at 880.299 kb on - strand, within yeeA at 880.410 kb on - strand, within yeeA at 880.447 kb on - strand, within yeeA at 880.530 kb on - strand, within yeeA at 880.695 kb on - strand, within yeeA at 880.743 kb on - strand, within yeeA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 878,431 + yeeW MCAODC_20350 0.49 +1.8 878,432 - yeeW MCAODC_20350 0.49 +0.9 878,434 + yeeW MCAODC_20350 0.50 -0.1 878,434 + yeeW MCAODC_20350 0.50 +0.5 878,434 + yeeW MCAODC_20350 0.50 -0.2 878,504 + yeeW MCAODC_20350 0.86 +1.5 878,504 + yeeW MCAODC_20350 0.86 -1.2 878,505 - yeeW MCAODC_20350 0.87 -1.5 878,505 - yeeW MCAODC_20350 0.87 +0.1 878,505 - yeeW MCAODC_20350 0.87 +1.1 878,528 + -0.2 878,529 - -1.9 878,551 + -1.7 878,552 - -0.9 878,553 + -0.4 878,554 - +0.5 878,593 + -0.9 878,593 + -4.3 878,720 + +0.3 878,778 - +0.4 878,782 + -0.5 878,782 + -1.2 878,783 - -0.7 878,785 + -1.1 878,785 + +0.0 878,832 + -0.6 878,833 - -1.0 878,963 + -1.7 878,963 + -1.0 879,119 + +0.3 879,170 + +0.1 879,171 - +0.3 879,204 - +0.5 879,252 - +1.5 879,270 + -2.4 879,282 + +0.6 879,372 + -1.0 879,372 + -0.0 879,372 + -0.1 879,373 - +1.6 879,460 + -1.7 879,523 - yeeX MCAODC_20355 0.29 -0.3 879,607 - yeeX MCAODC_20355 0.54 -0.2 879,698 - yeeX MCAODC_20355 0.82 -1.7 879,762 - -1.3 879,764 - -1.3 879,825 - -0.0 879,825 - -0.7 879,831 - +0.7 879,831 - -0.1 879,869 - -0.5 879,874 - -0.3 879,881 - +0.7 879,930 + +0.5 880,005 + -0.2 880,005 + +0.3 880,006 - +1.9 880,006 - -1.0 880,006 - -1.1 880,006 - -1.4 880,006 - +1.2 880,006 - -1.4 880,012 - -1.2 880,012 - -0.1 880,121 - yeeA MCAODC_20360 0.18 +0.7 880,128 + yeeA MCAODC_20360 0.19 -2.5 880,155 - yeeA MCAODC_20360 0.21 +0.6 880,258 + yeeA MCAODC_20360 0.31 +0.5 880,296 + yeeA MCAODC_20360 0.35 -1.8 880,296 + yeeA MCAODC_20360 0.35 -0.1 880,297 - yeeA MCAODC_20360 0.35 +0.8 880,299 - yeeA MCAODC_20360 0.35 -0.1 880,410 - yeeA MCAODC_20360 0.45 -0.9 880,447 - yeeA MCAODC_20360 0.49 +1.2 880,530 - yeeA MCAODC_20360 0.57 -3.0 880,695 - yeeA MCAODC_20360 0.72 -0.6 880,743 - yeeA MCAODC_20360 0.77 -0.7
Or see this region's nucleotide sequence