Strain Fitness in Escherichia coli ECRC101 around MCAODC_20310

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_20305 and MCAODC_20310 are separated by 135 nucleotidesMCAODC_20310 and MCAODC_20315 are separated by 15 nucleotidesMCAODC_20315 and MCAODC_20320 are separated by 220 nucleotides MCAODC_20305: MCAODC_20305 - phospholipase, at 872,742 to 873,812 _20305 MCAODC_20310: MCAODC_20310 - hypothetical protein, at 873,948 to 874,631 _20310 MCAODC_20315: MCAODC_20315 - hypothetical protein, at 874,647 to 875,057 _20315 MCAODC_20320: MCAODC_20320 - DUF932 domain-containing protein, at 875,278 to 876,099 _20320 Position (kb) 873 874 875Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 873.981 kb on - strandat 873.982 kb on + strandat 874.026 kb on + strand, within MCAODC_20310at 874.042 kb on + strand, within MCAODC_20310at 874.235 kb on + strand, within MCAODC_20310at 874.288 kb on - strand, within MCAODC_20310at 874.296 kb on + strand, within MCAODC_20310at 874.296 kb on + strand, within MCAODC_20310at 874.314 kb on + strand, within MCAODC_20310at 874.339 kb on + strand, within MCAODC_20310at 874.339 kb on + strand, within MCAODC_20310at 874.383 kb on - strand, within MCAODC_20310at 874.428 kb on - strand, within MCAODC_20310at 874.495 kb on - strand, within MCAODC_20310at 874.495 kb on - strand, within MCAODC_20310at 874.540 kb on + strand, within MCAODC_20310at 874.611 kb on + strandat 874.615 kb on + strandat 874.630 kb on - strandat 874.720 kb on + strand, within MCAODC_20315at 874.754 kb on + strand, within MCAODC_20315at 874.754 kb on + strand, within MCAODC_20315at 874.818 kb on + strand, within MCAODC_20315at 874.818 kb on + strand, within MCAODC_20315at 874.818 kb on + strand, within MCAODC_20315at 874.820 kb on + strand, within MCAODC_20315at 874.833 kb on + strand, within MCAODC_20315at 874.833 kb on + strand, within MCAODC_20315at 874.834 kb on - strand, within MCAODC_20315at 874.869 kb on + strand, within MCAODC_20315at 874.952 kb on + strand, within MCAODC_20315at 874.953 kb on - strand, within MCAODC_20315at 874.996 kb on + strand, within MCAODC_20315at 875.033 kb on - strandat 875.063 kb on - strandat 875.086 kb on + strandat 875.087 kb on - strandat 875.087 kb on - strandat 875.089 kb on + strandat 875.089 kb on + strandat 875.102 kb on - strandat 875.105 kb on + strandat 875.303 kb on - strandat 875.318 kb on + strandat 875.363 kb on + strand, within MCAODC_20320at 875.364 kb on - strand, within MCAODC_20320at 875.416 kb on + strand, within MCAODC_20320at 875.416 kb on + strand, within MCAODC_20320at 875.430 kb on + strand, within MCAODC_20320at 875.555 kb on + strand, within MCAODC_20320at 875.615 kb on - strand, within MCAODC_20320at 875.615 kb on - strand, within MCAODC_20320

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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873,981 - -0.1
873,982 + -1.2
874,026 + MCAODC_20310 0.11 +0.7
874,042 + MCAODC_20310 0.14 -0.2
874,235 + MCAODC_20310 0.42 -0.3
874,288 - MCAODC_20310 0.50 +1.5
874,296 + MCAODC_20310 0.51 +0.5
874,296 + MCAODC_20310 0.51 -1.2
874,314 + MCAODC_20310 0.54 -0.4
874,339 + MCAODC_20310 0.57 +0.3
874,339 + MCAODC_20310 0.57 +0.9
874,383 - MCAODC_20310 0.64 +1.1
874,428 - MCAODC_20310 0.70 -0.8
874,495 - MCAODC_20310 0.80 -0.2
874,495 - MCAODC_20310 0.80 +0.0
874,540 + MCAODC_20310 0.87 -1.9
874,611 + -1.7
874,615 + -2.5
874,630 - -0.5
874,720 + MCAODC_20315 0.18 -0.5
874,754 + MCAODC_20315 0.26 -0.1
874,754 + MCAODC_20315 0.26 +0.3
874,818 + MCAODC_20315 0.42 -2.2
874,818 + MCAODC_20315 0.42 +1.1
874,818 + MCAODC_20315 0.42 -0.1
874,820 + MCAODC_20315 0.42 -1.9
874,833 + MCAODC_20315 0.45 -0.7
874,833 + MCAODC_20315 0.45 -0.7
874,834 - MCAODC_20315 0.45 -2.9
874,869 + MCAODC_20315 0.54 +0.2
874,952 + MCAODC_20315 0.74 -0.1
874,953 - MCAODC_20315 0.74 -0.9
874,996 + MCAODC_20315 0.85 +0.5
875,033 - +0.2
875,063 - -2.5
875,086 + +0.4
875,087 - -0.5
875,087 - -1.3
875,089 + -1.0
875,089 + -1.0
875,102 - +0.6
875,105 + +1.3
875,303 - -0.9
875,318 + -1.8
875,363 + MCAODC_20320 0.10 +0.4
875,364 - MCAODC_20320 0.10 +0.1
875,416 + MCAODC_20320 0.17 -1.7
875,416 + MCAODC_20320 0.17 -1.1
875,430 + MCAODC_20320 0.18 +0.0
875,555 + MCAODC_20320 0.34 -5.9
875,615 - MCAODC_20320 0.41 -0.3
875,615 - MCAODC_20320 0.41 +1.5

Or see this region's nucleotide sequence