Strain Fitness in Escherichia coli ECRC101 around MCAODC_18355

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthrS and MCAODC_18345 are separated by 52 nucleotidesMCAODC_18345 and infC are separated by 96 nucleotidesinfC and thrS are separated by 111 nucleotidesthrS and MCAODC_18360 are separated by 522 nucleotides MCAODC_18340: thrS - threonine--tRNA ligase, at 528,374 to 528,730 thrS MCAODC_18345: MCAODC_18345 - 50S ribosomal protein L35, at 528,783 to 528,980 _18345 MCAODC_18350: infC - translation initiation factor IF-3, at 529,077 to 529,511 infC MCAODC_18355: thrS - threonine--tRNA ligase, at 529,623 to 531,551 thrS MCAODC_18360: MCAODC_18360 - ShET2 enterotoxin, N-terminal region, at 532,074 to 533,972 _18360 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -1 0 1at 531.692 kb on - strandat 531.725 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.789 kb on - strandat 531.796 kb on - strandat 532.110 kb on - strandat 532.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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531,692 - -0.2
531,725 - -0.6
531,748 - +0.0
531,748 - +0.7
531,748 - -0.4
531,789 - -1.1
531,796 - +0.2
532,110 - -1.1
532,167 - +0.8

Or see this region's nucleotide sequence