Strain Fitness in Escherichia coli ECRC101 around MCAODC_18280

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroH and ydiE are separated by 131 nucleotidesydiE and selO are separated by 3 nucleotides MCAODC_18275: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 517,417 to 518,463 aroH MCAODC_18280: ydiE - Uncharacterized protein YdiE, at 518,595 to 518,786 ydiE MCAODC_18285: selO - protein adenylyltransferase SelO, at 518,790 to 520,226 selO Position (kb) 518 519Strain fitness (log2 ratio) -2 -1 0 1 2at 517.694 kb on - strand, within aroHat 517.961 kb on + strand, within aroHat 518.034 kb on + strand, within aroHat 518.034 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.109 kb on + strand, within aroHat 518.109 kb on + strand, within aroHat 518.110 kb on - strand, within aroHat 518.110 kb on - strand, within aroHat 518.220 kb on + strand, within aroHat 518.266 kb on - strand, within aroHat 518.371 kb on + strandat 518.602 kb on - strandat 518.845 kb on + strandat 518.845 kb on + strandat 518.846 kb on - strandat 519.193 kb on - strand, within selOat 519.278 kb on - strand, within selOat 519.278 kb on - strand, within selOat 519.307 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.431 kb on - strand, within selOat 519.495 kb on - strand, within selOat 519.551 kb on + strand, within selOat 519.552 kb on - strand, within selOat 519.584 kb on - strand, within selOat 519.780 kb on - strand, within selO

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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517,694 - aroH MCAODC_18275 0.26 +1.6
517,961 + aroH MCAODC_18275 0.52 -1.6
518,034 + aroH MCAODC_18275 0.59 -1.1
518,034 + aroH MCAODC_18275 0.59 +0.4
518,074 + aroH MCAODC_18275 0.63 -2.2
518,074 + aroH MCAODC_18275 0.63 +1.1
518,074 + aroH MCAODC_18275 0.63 +0.0
518,106 + aroH MCAODC_18275 0.66 +0.5
518,106 + aroH MCAODC_18275 0.66 -0.2
518,106 + aroH MCAODC_18275 0.66 +2.4
518,109 + aroH MCAODC_18275 0.66 +0.1
518,109 + aroH MCAODC_18275 0.66 -0.1
518,110 - aroH MCAODC_18275 0.66 -0.2
518,110 - aroH MCAODC_18275 0.66 -1.3
518,220 + aroH MCAODC_18275 0.77 -0.2
518,266 - aroH MCAODC_18275 0.81 -1.0
518,371 + -0.3
518,602 - +0.2
518,845 + +0.4
518,845 + +0.9
518,846 - -0.7
519,193 - selO MCAODC_18285 0.28 +1.4
519,278 - selO MCAODC_18285 0.34 -0.6
519,278 - selO MCAODC_18285 0.34 +1.0
519,307 - selO MCAODC_18285 0.36 -0.2
519,346 - selO MCAODC_18285 0.39 -0.6
519,346 - selO MCAODC_18285 0.39 -0.5
519,431 - selO MCAODC_18285 0.45 -1.6
519,495 - selO MCAODC_18285 0.49 -0.0
519,551 + selO MCAODC_18285 0.53 +2.4
519,552 - selO MCAODC_18285 0.53 +1.8
519,584 - selO MCAODC_18285 0.55 +1.3
519,780 - selO MCAODC_18285 0.69 -2.5

Or see this region's nucleotide sequence