Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt resD and MCAODC_15410 are separated by 676 nucleotides MCAODC_15410 and tnp-IS3 overlap by 35 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
MCAODC_15405: resD - Resolvase, at 66,637 to 67,443
resD
MCAODC_15410: MCAODC_15410 - AMP nucleosidase, at 68,120 to 68,200
_15410
MCAODC_15415: tnp-IS3 - IS3 family transposase, at 68,166 to 69,053
tnp-IS3
MCAODC_15420: tnp-IS3 - IS3 family transposase, at 69,053 to 69,379
tnp-IS3
Position (kb) 68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.242 kb on + strand, within resD at 67.243 kb on - strand, within resD at 67.243 kb on - strand, within resD at 67.243 kb on - strand, within resD at 67.243 kb on - strand, within resD at 67.243 kb on - strand, within resD at 67.258 kb on + strand, within resD at 67.258 kb on + strand, within resD at 67.259 kb on - strand, within resD at 67.276 kb on + strand, within resD at 67.277 kb on - strand, within resD at 67.277 kb on - strand, within resD at 67.287 kb on - strand, within resD at 67.320 kb on + strand, within resD at 67.320 kb on + strand, within resD at 67.320 kb on + strand, within resD at 67.320 kb on + strand, within resD at 67.320 kb on + strand, within resD at 67.321 kb on - strand, within resD at 67.321 kb on - strand, within resD at 67.321 kb on - strand, within resD at 67.321 kb on - strand, within resD at 67.321 kb on - strand, within resD at 67.345 kb on + strand, within resD at 67.346 kb on - strand, within resD at 67.437 kb on - strand at 67.437 kb on - strand at 67.437 kb on - strand at 67.463 kb on + strand at 67.463 kb on + strand at 67.463 kb on + strand at 67.463 kb on + strand at 67.463 kb on + strand at 67.463 kb on + strand at 67.464 kb on - strand at 67.464 kb on - strand at 67.464 kb on - strand at 67.465 kb on + strand at 67.570 kb on + strand at 67.589 kb on - strand at 67.616 kb on + strand at 67.617 kb on - strand at 67.618 kb on + strand at 67.618 kb on + strand at 67.618 kb on + strand at 67.619 kb on - strand at 67.625 kb on + strand at 67.625 kb on + strand at 67.625 kb on + strand at 67.625 kb on + strand at 67.625 kb on + strand at 67.625 kb on + strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.626 kb on - strand at 67.689 kb on + strand at 67.689 kb on + strand at 67.690 kb on - strand at 67.729 kb on + strand at 67.729 kb on + strand at 67.729 kb on + strand at 67.754 kb on + strand at 67.754 kb on + strand at 67.754 kb on + strand at 67.754 kb on + strand at 67.754 kb on + strand at 67.791 kb on + strand at 67.791 kb on + strand at 67.800 kb on + strand at 67.800 kb on + strand at 67.870 kb on + strand at 67.870 kb on + strand at 67.870 kb on + strand at 67.870 kb on + strand at 67.870 kb on + strand at 67.870 kb on + strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.871 kb on - strand at 67.872 kb on + strand at 67.872 kb on + strand at 67.873 kb on - strand at 67.873 kb on - strand at 67.873 kb on - strand at 67.873 kb on - strand at 67.873 kb on - strand at 67.873 kb on - strand at 67.874 kb on + strand at 67.874 kb on + strand at 67.875 kb on - strand at 67.875 kb on - strand at 67.875 kb on - strand at 67.875 kb on - strand at 67.875 kb on - strand at 67.875 kb on - strand at 67.884 kb on - strand at 67.884 kb on - strand at 67.884 kb on - strand at 67.926 kb on - strand at 67.945 kb on + strand at 67.992 kb on + strand at 67.992 kb on + strand at 67.993 kb on - strand at 68.000 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 67,242 + resD MCAODC_15405 0.75 +0.4 67,242 + resD MCAODC_15405 0.75 -0.3 67,242 + resD MCAODC_15405 0.75 -0.4 67,242 + resD MCAODC_15405 0.75 -0.7 67,242 + resD MCAODC_15405 0.75 -0.7 67,242 + resD MCAODC_15405 0.75 +0.1 67,242 + resD MCAODC_15405 0.75 +0.2 67,243 - resD MCAODC_15405 0.75 +0.7 67,243 - resD MCAODC_15405 0.75 +0.1 67,243 - resD MCAODC_15405 0.75 +0.8 67,243 - resD MCAODC_15405 0.75 -2.9 67,243 - resD MCAODC_15405 0.75 +0.1 67,258 + resD MCAODC_15405 0.77 +1.7 67,258 + resD MCAODC_15405 0.77 -0.1 67,259 - resD MCAODC_15405 0.77 +1.1 67,276 + resD MCAODC_15405 0.79 +0.2 67,277 - resD MCAODC_15405 0.79 +3.7 67,277 - resD MCAODC_15405 0.79 -1.7 67,287 - resD MCAODC_15405 0.81 +0.4 67,320 + resD MCAODC_15405 0.85 -0.7 67,320 + resD MCAODC_15405 0.85 -0.0 67,320 + resD MCAODC_15405 0.85 -1.4 67,320 + resD MCAODC_15405 0.85 +2.6 67,320 + resD MCAODC_15405 0.85 +1.7 67,321 - resD MCAODC_15405 0.85 -1.6 67,321 - resD MCAODC_15405 0.85 -1.1 67,321 - resD MCAODC_15405 0.85 +1.2 67,321 - resD MCAODC_15405 0.85 +1.7 67,321 - resD MCAODC_15405 0.85 +0.4 67,345 + resD MCAODC_15405 0.88 +0.7 67,346 - resD MCAODC_15405 0.88 +0.7 67,437 - +0.8 67,437 - -0.1 67,437 - -2.7 67,463 + -0.3 67,463 + -1.6 67,463 + -0.3 67,463 + +0.3 67,463 + +1.0 67,463 + -2.1 67,464 - -0.4 67,464 - +3.7 67,464 - +0.4 67,465 + +1.1 67,570 + +1.2 67,589 - -1.6 67,616 + -1.9 67,617 - -1.7 67,618 + -0.4 67,618 + +1.5 67,618 + +1.2 67,619 - -0.3 67,625 + -0.4 67,625 + -1.2 67,625 + +0.2 67,625 + -0.2 67,625 + -2.9 67,625 + -0.8 67,626 - -0.3 67,626 - +1.0 67,626 - +0.1 67,626 - +1.1 67,626 - +3.7 67,626 - +1.3 67,626 - -0.4 67,626 - -0.9 67,689 + +1.2 67,689 + +0.1 67,690 - -2.0 67,729 + -0.5 67,729 + +0.9 67,729 + -1.5 67,754 + +0.2 67,754 + -0.3 67,754 + +4.1 67,754 + +1.2 67,754 + +0.6 67,791 + +0.5 67,791 + -0.0 67,800 + +1.0 67,800 + +0.0 67,870 + -0.4 67,870 + -1.3 67,870 + -0.3 67,870 + +0.5 67,870 + +1.5 67,870 + +3.7 67,871 - -3.1 67,871 - +1.0 67,871 - -0.0 67,871 - +0.7 67,871 - +0.1 67,871 - +2.7 67,871 - +0.8 67,872 + +1.1 67,872 + -0.6 67,873 - -1.2 67,873 - +1.6 67,873 - -0.1 67,873 - +1.9 67,873 - -0.6 67,873 - -1.2 67,874 + -1.7 67,874 + -0.2 67,875 - +0.5 67,875 - -0.6 67,875 - +0.2 67,875 - +0.4 67,875 - +1.1 67,875 - +1.4 67,884 - +0.5 67,884 - +0.9 67,884 - +0.7 67,926 - +0.8 67,945 + -1.1 67,992 + +1.5 67,992 + +1.2 67,993 - +0.5 68,000 + -0.6 68,079 + -1.3 68,079 + -1.6 68,079 + -2.0 68,097 + +0.9
Or see this region's nucleotide sequence