Strain Fitness in Escherichia coli ECRC101 around MCAODC_15315
Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Sodium-DL-Lactate |
---|---|---|---|---|---|
remove | |||||
48,067 | - | gspL | MCAODC_15305 | 0.67 | +1.1 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | -1.1 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | -0.9 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | +0.0 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | +1.3 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | +0.2 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | +0.4 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | +0.1 |
48,076 | + | gspL | MCAODC_15305 | 0.68 | -0.6 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | -1.2 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +0.7 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | -3.2 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | -1.9 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | -0.3 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +1.3 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +0.1 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | -1.3 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +0.5 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +0.8 |
48,077 | - | gspL | MCAODC_15305 | 0.68 | +0.7 |
48,084 | + | gspL | MCAODC_15305 | 0.69 | -0.8 |
48,085 | - | gspL | MCAODC_15305 | 0.69 | +2.1 |
48,170 | + | gspL | MCAODC_15305 | 0.76 | +0.4 |
48,170 | + | gspL | MCAODC_15305 | 0.76 | -2.3 |
48,170 | + | gspL | MCAODC_15305 | 0.76 | +0.9 |
48,171 | - | gspL | MCAODC_15305 | 0.77 | +0.5 |
48,171 | - | gspL | MCAODC_15305 | 0.77 | -0.1 |
48,171 | - | gspL | MCAODC_15305 | 0.77 | -2.5 |
48,171 | - | gspL | MCAODC_15305 | 0.77 | +1.0 |
48,172 | + | gspL | MCAODC_15305 | 0.77 | -1.0 |
48,172 | + | gspL | MCAODC_15305 | 0.77 | -0.6 |
48,172 | + | gspL | MCAODC_15305 | 0.77 | +1.6 |
48,172 | + | gspL | MCAODC_15305 | 0.77 | -1.0 |
48,232 | + | gspL | MCAODC_15305 | 0.82 | +0.2 |
48,233 | - | gspL | MCAODC_15305 | 0.82 | -0.2 |
48,233 | - | gspL | MCAODC_15305 | 0.82 | +2.3 |
48,233 | - | gspL | MCAODC_15305 | 0.82 | +0.9 |
48,233 | - | gspL | MCAODC_15305 | 0.82 | +1.8 |
48,238 | + | gspL | MCAODC_15305 | 0.83 | +0.8 |
48,426 | + | -2.2 | |||
48,426 | + | +0.8 | |||
48,427 | - | -1.0 | |||
48,427 | - | -0.3 | |||
48,442 | + | +0.9 | |||
48,442 | + | +0.5 | |||
48,443 | - | -0.5 | |||
48,488 | + | pulM | MCAODC_15310 | 0.14 | +0.0 |
48,489 | - | pulM | MCAODC_15310 | 0.14 | +0.6 |
48,508 | + | pulM | MCAODC_15310 | 0.18 | -0.8 |
48,508 | + | pulM | MCAODC_15310 | 0.18 | +0.0 |
48,509 | - | pulM | MCAODC_15310 | 0.18 | -0.4 |
48,511 | + | pulM | MCAODC_15310 | 0.19 | -0.8 |
48,511 | + | pulM | MCAODC_15310 | 0.19 | -1.4 |
48,511 | + | pulM | MCAODC_15310 | 0.19 | +1.3 |
48,511 | + | pulM | MCAODC_15310 | 0.19 | -0.3 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | -1.4 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | +1.0 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | -0.6 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | +0.4 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | -0.2 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | +0.8 |
48,512 | - | pulM | MCAODC_15310 | 0.19 | +0.4 |
48,546 | + | pulM | MCAODC_15310 | 0.26 | +0.6 |
48,546 | + | pulM | MCAODC_15310 | 0.26 | +0.8 |
48,547 | - | pulM | MCAODC_15310 | 0.26 | -3.3 |
48,547 | - | pulM | MCAODC_15310 | 0.26 | +0.4 |
48,560 | + | pulM | MCAODC_15310 | 0.28 | +1.8 |
48,560 | + | pulM | MCAODC_15310 | 0.28 | -0.9 |
48,560 | + | pulM | MCAODC_15310 | 0.28 | -0.2 |
48,560 | + | pulM | MCAODC_15310 | 0.28 | +0.1 |
48,561 | - | pulM | MCAODC_15310 | 0.28 | +1.1 |
48,561 | - | pulM | MCAODC_15310 | 0.28 | -1.1 |
48,561 | - | pulM | MCAODC_15310 | 0.28 | -0.1 |
48,561 | - | pulM | MCAODC_15310 | 0.28 | +0.0 |
48,561 | - | pulM | MCAODC_15310 | 0.28 | -0.6 |
48,564 | + | pulM | MCAODC_15310 | 0.29 | -1.0 |
48,565 | - | pulM | MCAODC_15310 | 0.29 | -0.3 |
48,565 | - | pulM | MCAODC_15310 | 0.29 | +1.5 |
48,606 | - | pulM | MCAODC_15310 | 0.37 | +1.5 |
48,614 | + | pulM | MCAODC_15310 | 0.39 | -0.1 |
48,614 | + | pulM | MCAODC_15310 | 0.39 | +1.1 |
48,615 | - | pulM | MCAODC_15310 | 0.39 | +0.8 |
48,633 | + | pulM | MCAODC_15310 | 0.42 | +0.5 |
48,633 | + | pulM | MCAODC_15310 | 0.42 | +2.8 |
48,633 | + | pulM | MCAODC_15310 | 0.42 | +1.9 |
48,633 | + | pulM | MCAODC_15310 | 0.42 | +0.9 |
48,634 | - | pulM | MCAODC_15310 | 0.43 | -1.8 |
48,634 | - | pulM | MCAODC_15310 | 0.43 | +3.2 |
48,634 | - | pulM | MCAODC_15310 | 0.43 | +0.1 |
48,634 | - | pulM | MCAODC_15310 | 0.43 | -0.7 |
48,656 | + | pulM | MCAODC_15310 | 0.47 | -0.7 |
48,662 | + | pulM | MCAODC_15310 | 0.48 | +0.8 |
48,663 | - | pulM | MCAODC_15310 | 0.48 | +1.0 |
48,682 | - | pulM | MCAODC_15310 | 0.52 | -0.9 |
48,682 | - | pulM | MCAODC_15310 | 0.52 | +1.1 |
48,695 | - | pulM | MCAODC_15310 | 0.55 | +1.2 |
48,702 | - | pulM | MCAODC_15310 | 0.56 | -0.8 |
48,702 | - | pulM | MCAODC_15310 | 0.56 | -2.3 |
48,749 | + | pulM | MCAODC_15310 | 0.65 | +0.3 |
48,787 | - | pulM | MCAODC_15310 | 0.73 | -2.4 |
48,810 | + | pulM | MCAODC_15310 | 0.77 | +1.1 |
48,810 | + | pulM | MCAODC_15310 | 0.77 | -1.4 |
48,816 | + | pulM | MCAODC_15310 | 0.78 | +1.1 |
48,817 | - | pulM | MCAODC_15310 | 0.78 | -0.2 |
48,824 | + | pulM | MCAODC_15310 | 0.80 | -1.7 |
48,824 | + | pulM | MCAODC_15310 | 0.80 | +1.6 |
48,824 | + | pulM | MCAODC_15310 | 0.80 | -0.4 |
48,825 | - | pulM | MCAODC_15310 | 0.80 | -0.5 |
48,864 | - | pulM | MCAODC_15310 | 0.88 | +0.3 |
48,864 | - | pulM | MCAODC_15310 | 0.88 | -1.5 |
48,899 | + | -2.4 | |||
48,899 | + | -1.1 | |||
48,900 | - | +0.8 | |||
48,900 | - | +1.5 | |||
48,933 | + | +0.0 | |||
48,934 | - | +0.4 | |||
48,938 | + | +0.8 | |||
48,946 | - | +0.3 | |||
48,958 | - | +0.6 | |||
48,970 | + | -2.0 | |||
48,970 | + | +0.3 | |||
48,970 | + | +0.3 | |||
48,971 | - | +0.3 | |||
48,971 | - | +1.7 | |||
48,971 | - | -1.1 | |||
48,971 | - | +1.2 | |||
48,971 | - | +0.8 | |||
48,972 | + | +0.3 | |||
48,973 | - | -1.8 | |||
48,991 | - | -1.9 | |||
49,015 | + | +1.5 | |||
49,015 | + | -0.2 | |||
49,016 | - | -0.3 | |||
49,139 | + | pulO | MCAODC_15315 | 0.18 | -0.0 |
49,250 | + | pulO | MCAODC_15315 | 0.32 | -0.8 |
49,250 | + | pulO | MCAODC_15315 | 0.32 | -1.3 |
49,255 | + | pulO | MCAODC_15315 | 0.32 | +2.9 |
49,255 | + | pulO | MCAODC_15315 | 0.32 | -2.1 |
49,256 | - | pulO | MCAODC_15315 | 0.32 | -0.5 |
49,256 | - | pulO | MCAODC_15315 | 0.32 | -0.2 |
49,259 | + | pulO | MCAODC_15315 | 0.33 | +1.5 |
49,260 | - | pulO | MCAODC_15315 | 0.33 | -2.1 |
49,296 | + | pulO | MCAODC_15315 | 0.37 | +0.4 |
49,297 | - | pulO | MCAODC_15315 | 0.37 | +0.8 |
49,306 | + | pulO | MCAODC_15315 | 0.38 | +0.5 |
49,306 | + | pulO | MCAODC_15315 | 0.38 | -0.8 |
49,307 | - | pulO | MCAODC_15315 | 0.39 | -1.4 |
49,326 | - | pulO | MCAODC_15315 | 0.41 | +0.4 |
49,341 | - | pulO | MCAODC_15315 | 0.43 | -0.5 |
49,341 | - | pulO | MCAODC_15315 | 0.43 | +1.9 |
49,502 | + | pulO | MCAODC_15315 | 0.62 | +1.2 |
49,523 | + | pulO | MCAODC_15315 | 0.65 | +1.0 |
49,548 | - | pulO | MCAODC_15315 | 0.68 | -2.2 |
49,555 | + | pulO | MCAODC_15315 | 0.68 | +0.2 |
49,577 | - | pulO | MCAODC_15315 | 0.71 | +0.2 |
49,613 | + | pulO | MCAODC_15315 | 0.75 | -2.3 |
49,614 | - | pulO | MCAODC_15315 | 0.75 | +0.1 |
49,629 | + | pulO | MCAODC_15315 | 0.77 | +0.8 |
49,635 | - | pulO | MCAODC_15315 | 0.78 | +0.5 |
49,635 | - | pulO | MCAODC_15315 | 0.78 | -0.4 |
49,635 | - | pulO | MCAODC_15315 | 0.78 | +1.1 |
49,673 | + | pulO | MCAODC_15315 | 0.82 | +0.9 |
49,683 | - | pulO | MCAODC_15315 | 0.84 | +0.3 |
49,683 | - | pulO | MCAODC_15315 | 0.84 | -0.0 |
49,715 | + | pulO | MCAODC_15315 | 0.88 | +0.7 |
49,716 | - | pulO | MCAODC_15315 | 0.88 | +0.9 |
49,721 | + | pulO | MCAODC_15315 | 0.88 | -1.3 |
49,731 | + | pulO | MCAODC_15315 | 0.89 | -0.5 |
49,732 | - | pulO | MCAODC_15315 | 0.90 | +0.8 |
49,736 | + | -1.5 | |||
49,737 | - | -0.1 | |||
49,737 | - | -1.6 | |||
49,737 | - | +3.1 | |||
49,737 | - | -1.5 | |||
49,743 | + | -0.9 | |||
49,753 | - | -0.1 | |||
49,816 | + | -2.3 | |||
49,816 | + | -0.1 | |||
49,816 | + | -1.2 | |||
49,816 | + | +1.3 | |||
49,816 | + | -3.2 | |||
49,816 | + | +2.4 | |||
49,816 | + | +0.3 | |||
49,817 | - | -2.6 | |||
49,817 | - | +1.0 | |||
49,817 | - | +2.1 | |||
49,836 | + | -2.0 | |||
49,836 | + | +1.2 | |||
49,837 | - | -0.4 | |||
49,840 | - | +2.3 | |||
49,843 | - | -0.1 | |||
49,861 | - | +0.4 | |||
49,875 | - | -0.8 | |||
49,898 | - | +1.1 | |||
49,898 | - | -0.9 | |||
49,901 | + | +0.4 | |||
49,902 | - | +1.7 | |||
49,922 | - | +0.3 | |||
49,922 | - | +0.1 | |||
49,942 | + | -0.3 | |||
49,942 | + | +0.5 | |||
49,953 | + | eptO | MCAODC_15320 | 0.10 | -2.1 |
49,953 | + | eptO | MCAODC_15320 | 0.10 | +0.3 |
49,953 | + | eptO | MCAODC_15320 | 0.10 | -2.4 |
49,953 | + | eptO | MCAODC_15320 | 0.10 | +0.8 |
49,953 | + | eptO | MCAODC_15320 | 0.10 | -1.9 |
49,962 | + | eptO | MCAODC_15320 | 0.12 | +0.0 |
49,962 | + | eptO | MCAODC_15320 | 0.12 | -0.0 |
49,963 | - | eptO | MCAODC_15320 | 0.13 | +0.0 |
49,963 | - | eptO | MCAODC_15320 | 0.13 | -0.7 |
49,963 | - | eptO | MCAODC_15320 | 0.13 | +0.6 |
50,002 | + | eptO | MCAODC_15320 | 0.22 | -1.0 |
50,086 | + | eptO | MCAODC_15320 | 0.43 | -0.5 |
50,086 | + | eptO | MCAODC_15320 | 0.43 | +0.1 |
50,086 | + | eptO | MCAODC_15320 | 0.43 | -0.4 |
50,086 | + | eptO | MCAODC_15320 | 0.43 | +0.2 |
50,086 | + | eptO | MCAODC_15320 | 0.43 | -0.0 |
50,087 | - | eptO | MCAODC_15320 | 0.44 | +2.0 |
50,087 | - | eptO | MCAODC_15320 | 0.44 | -0.2 |
50,087 | - | eptO | MCAODC_15320 | 0.44 | -0.7 |
50,087 | - | eptO | MCAODC_15320 | 0.44 | -0.8 |
50,122 | - | eptO | MCAODC_15320 | 0.52 | -1.2 |
50,122 | - | eptO | MCAODC_15320 | 0.52 | +0.7 |
50,122 | - | eptO | MCAODC_15320 | 0.52 | +1.2 |
50,122 | - | eptO | MCAODC_15320 | 0.52 | -0.5 |
50,166 | + | eptO | MCAODC_15320 | 0.63 | -0.8 |
50,167 | - | eptO | MCAODC_15320 | 0.64 | -1.9 |
50,167 | - | eptO | MCAODC_15320 | 0.64 | +2.1 |
50,179 | + | eptO | MCAODC_15320 | 0.67 | -0.7 |
50,179 | + | eptO | MCAODC_15320 | 0.67 | -0.9 |
50,179 | + | eptO | MCAODC_15320 | 0.67 | -0.3 |
50,179 | + | eptO | MCAODC_15320 | 0.67 | -1.6 |
50,180 | - | eptO | MCAODC_15320 | 0.67 | +0.2 |
50,181 | + | eptO | MCAODC_15320 | 0.67 | +1.3 |
50,181 | + | eptO | MCAODC_15320 | 0.67 | -0.9 |
50,181 | + | eptO | MCAODC_15320 | 0.67 | -0.7 |
50,181 | + | eptO | MCAODC_15320 | 0.67 | -0.7 |
50,181 | + | eptO | MCAODC_15320 | 0.67 | +0.2 |
50,182 | - | eptO | MCAODC_15320 | 0.67 | -0.3 |
50,182 | - | eptO | MCAODC_15320 | 0.67 | -0.1 |
50,182 | - | eptO | MCAODC_15320 | 0.67 | +1.7 |
50,182 | - | eptO | MCAODC_15320 | 0.67 | +1.5 |
50,182 | - | eptO | MCAODC_15320 | 0.67 | +0.9 |
50,185 | + | eptO | MCAODC_15320 | 0.68 | +1.2 |
50,185 | + | eptO | MCAODC_15320 | 0.68 | -0.6 |
50,186 | - | eptO | MCAODC_15320 | 0.68 | +2.7 |
50,186 | - | eptO | MCAODC_15320 | 0.68 | -1.1 |
50,200 | + | eptO | MCAODC_15320 | 0.72 | -0.2 |
50,200 | + | eptO | MCAODC_15320 | 0.72 | +0.6 |
50,200 | + | eptO | MCAODC_15320 | 0.72 | +0.2 |
50,200 | + | eptO | MCAODC_15320 | 0.72 | +3.4 |
50,200 | + | eptO | MCAODC_15320 | 0.72 | +1.2 |
50,201 | - | eptO | MCAODC_15320 | 0.72 | +0.6 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +2.0 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +1.5 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +2.7 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +0.4 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | -2.1 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +0.8 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | -0.9 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | -0.2 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +0.7 |
50,204 | + | eptO | MCAODC_15320 | 0.73 | +0.8 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -0.8 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -0.1 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -2.7 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -0.9 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | +1.0 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -1.6 |
50,205 | - | eptO | MCAODC_15320 | 0.73 | -0.2 |
50,227 | + | eptO | MCAODC_15320 | 0.79 | +0.7 |
50,238 | - | eptO | MCAODC_15320 | 0.81 | -0.4 |
50,239 | + | eptO | MCAODC_15320 | 0.82 | +1.4 |
50,240 | - | eptO | MCAODC_15320 | 0.82 | +0.2 |
50,241 | + | eptO | MCAODC_15320 | 0.82 | +1.1 |
50,241 | + | eptO | MCAODC_15320 | 0.82 | +0.7 |
50,278 | + | +1.7 | |||
50,289 | + | -1.1 | |||
50,289 | + | -1.0 | |||
50,313 | - | +0.6 | |||
50,341 | - | +0.4 | |||
50,341 | - | -0.8 | |||
50,360 | + | -0.6 | |||
50,360 | + | +0.6 | |||
50,360 | + | -0.5 | |||
50,374 | - | -1.6 | |||
50,393 | + | -1.6 | |||
50,393 | + | -0.3 | |||
50,393 | + | -0.9 | |||
50,394 | - | -2.2 | |||
50,394 | - | -1.1 | |||
50,458 | + | -0.4 | |||
50,458 | + | +0.7 | |||
50,458 | + | -0.8 | |||
50,458 | + | -0.3 | |||
50,458 | + | +0.1 | |||
50,459 | - | +0.2 | |||
50,459 | - | -0.8 | |||
50,459 | - | -0.4 | |||
50,459 | - | -1.1 | |||
50,459 | - | +0.1 | |||
50,519 | + | -2.3 | |||
50,556 | + | tnp-IS911 | MCAODC_15325 | 0.22 | +1.8 |
50,557 | - | tnp-IS911 | MCAODC_15325 | 0.22 | +1.9 |
50,557 | - | tnp-IS911 | MCAODC_15325 | 0.22 | +0.3 |
50,557 | - | tnp-IS911 | MCAODC_15325 | 0.22 | -2.0 |
50,557 | - | tnp-IS911 | MCAODC_15325 | 0.22 | +0.2 |
50,582 | + | tnp-IS911 | MCAODC_15325 | 0.30 | -0.6 |
50,689 | + | tnp-IS911 | MCAODC_15325 | 0.65 | -1.8 |
50,690 | - | tnp-IS911 | MCAODC_15325 | 0.65 | +0.5 |
50,690 | - | tnp-IS911 | MCAODC_15325 | 0.65 | +2.3 |
50,690 | - | tnp-IS911 | MCAODC_15325 | 0.65 | +0.7 |
Or see this region's nucleotide sequence