Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degQ and zapG are separated by 153 nucleotides zapG and zapE are separated by 193 nucleotides zapE and rplM are separated by 218 nucleotides rplM and rpsI are separated by 15 nucleotides
MCAODC_08325: degQ - serine endoprotease DegQ, at 1,668,849 to 1,670,216
degQ
MCAODC_08330: zapG - Z-ring associated protein ZapG, at 1,670,370 to 1,670,768
zapG
MCAODC_08335: zapE - cell division protein ZapE, at 1,670,962 to 1,672,089
zapE
MCAODC_08340: rplM - 50S ribosomal protein L13, at 1,672,308 to 1,672,736
rplM
MCAODC_08345: rpsI - 30S ribosomal protein S9, at 1,672,752 to 1,673,144
rpsI
Position (kb) 1670
1671
1672
1673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1670.179 kb on - strand at 1670.179 kb on - strand at 1670.179 kb on - strand at 1670.179 kb on - strand at 1670.179 kb on - strand at 1670.231 kb on + strand at 1670.311 kb on - strand at 1670.311 kb on - strand at 1670.311 kb on - strand at 1670.420 kb on - strand, within zapG at 1670.646 kb on - strand, within zapG at 1670.835 kb on - strand at 1670.835 kb on - strand at 1670.843 kb on - strand at 1670.845 kb on - strand at 1670.845 kb on - strand at 1670.851 kb on + strand at 1670.889 kb on - strand at 1670.893 kb on + strand at 1670.894 kb on - strand at 1670.894 kb on - strand at 1670.894 kb on - strand at 1670.955 kb on + strand at 1670.956 kb on - strand at 1670.973 kb on + strand at 1671.063 kb on + strand at 1671.063 kb on + strand at 1671.064 kb on - strand at 1671.068 kb on - strand at 1671.084 kb on + strand, within zapE at 1671.084 kb on + strand, within zapE at 1671.165 kb on + strand, within zapE at 1671.165 kb on + strand, within zapE at 1671.165 kb on + strand, within zapE at 1671.166 kb on - strand, within zapE at 1671.166 kb on - strand, within zapE at 1671.166 kb on - strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.182 kb on + strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.183 kb on - strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.184 kb on + strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.185 kb on - strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.186 kb on + strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.187 kb on - strand, within zapE at 1671.200 kb on + strand, within zapE at 1671.285 kb on + strand, within zapE at 1671.308 kb on + strand, within zapE at 1671.308 kb on + strand, within zapE at 1671.308 kb on + strand, within zapE at 1671.309 kb on - strand, within zapE at 1671.309 kb on - strand, within zapE at 1671.309 kb on - strand, within zapE at 1671.317 kb on + strand, within zapE at 1671.408 kb on + strand, within zapE at 1671.408 kb on + strand, within zapE at 1671.408 kb on + strand, within zapE at 1671.409 kb on - strand, within zapE at 1671.409 kb on - strand, within zapE at 1671.426 kb on - strand, within zapE at 1671.426 kb on - strand, within zapE at 1671.465 kb on + strand, within zapE at 1671.572 kb on + strand, within zapE at 1671.572 kb on + strand, within zapE at 1671.572 kb on + strand, within zapE at 1671.572 kb on + strand, within zapE at 1671.573 kb on - strand, within zapE at 1671.573 kb on - strand, within zapE at 1671.609 kb on + strand, within zapE at 1671.609 kb on + strand, within zapE at 1671.610 kb on - strand, within zapE at 1671.610 kb on - strand, within zapE at 1671.677 kb on + strand, within zapE at 1671.677 kb on + strand, within zapE at 1671.677 kb on + strand, within zapE at 1671.678 kb on - strand, within zapE at 1671.678 kb on - strand, within zapE at 1671.678 kb on - strand, within zapE at 1671.786 kb on + strand, within zapE at 1671.787 kb on - strand, within zapE at 1671.789 kb on + strand, within zapE at 1671.789 kb on + strand, within zapE at 1671.789 kb on + strand, within zapE at 1671.789 kb on + strand, within zapE at 1671.790 kb on - strand, within zapE at 1671.790 kb on - strand, within zapE at 1671.790 kb on - strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.823 kb on + strand, within zapE at 1671.824 kb on - strand, within zapE at 1671.824 kb on - strand, within zapE at 1671.824 kb on - strand, within zapE at 1671.824 kb on - strand, within zapE at 1671.825 kb on + strand, within zapE at 1671.825 kb on + strand, within zapE at 1671.826 kb on - strand, within zapE at 1671.826 kb on - strand, within zapE at 1671.850 kb on - strand, within zapE at 1671.850 kb on - strand, within zapE at 1671.850 kb on - strand, within zapE at 1671.869 kb on + strand, within zapE at 1671.870 kb on - strand, within zapE at 1671.870 kb on - strand, within zapE at 1671.912 kb on + strand, within zapE at 1671.912 kb on + strand, within zapE at 1671.953 kb on + strand, within zapE at 1671.953 kb on + strand, within zapE at 1671.953 kb on + strand, within zapE at 1671.954 kb on - strand, within zapE at 1671.979 kb on + strand at 1671.980 kb on - strand at 1672.060 kb on + strand at 1672.061 kb on - strand at 1672.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,670,179 - +1.8 1,670,179 - +2.1 1,670,179 - -0.0 1,670,179 - +1.3 1,670,179 - -0.5 1,670,231 + -0.7 1,670,311 - +0.4 1,670,311 - +0.4 1,670,311 - -0.1 1,670,420 - zapG MCAODC_08330 0.13 -0.1 1,670,646 - zapG MCAODC_08330 0.69 +2.1 1,670,835 - +2.4 1,670,835 - +1.3 1,670,843 - -0.9 1,670,845 - -0.1 1,670,845 - -0.3 1,670,851 + +1.4 1,670,889 - -1.6 1,670,893 + +0.2 1,670,894 - +1.1 1,670,894 - -0.8 1,670,894 - +0.4 1,670,955 + +0.2 1,670,956 - -1.2 1,670,973 + -1.1 1,671,063 + -1.3 1,671,063 + -0.6 1,671,064 - -2.5 1,671,068 - -1.4 1,671,084 + zapE MCAODC_08335 0.11 -0.1 1,671,084 + zapE MCAODC_08335 0.11 -1.1 1,671,165 + zapE MCAODC_08335 0.18 -1.7 1,671,165 + zapE MCAODC_08335 0.18 -0.4 1,671,165 + zapE MCAODC_08335 0.18 -0.1 1,671,166 - zapE MCAODC_08335 0.18 -2.3 1,671,166 - zapE MCAODC_08335 0.18 -3.4 1,671,166 - zapE MCAODC_08335 0.18 -1.1 1,671,182 + zapE MCAODC_08335 0.20 -0.2 1,671,182 + zapE MCAODC_08335 0.20 +0.2 1,671,182 + zapE MCAODC_08335 0.20 +0.4 1,671,182 + zapE MCAODC_08335 0.20 -0.7 1,671,182 + zapE MCAODC_08335 0.20 -0.5 1,671,182 + zapE MCAODC_08335 0.20 -0.0 1,671,182 + zapE MCAODC_08335 0.20 +0.2 1,671,182 + zapE MCAODC_08335 0.20 -2.0 1,671,182 + zapE MCAODC_08335 0.20 -1.8 1,671,183 - zapE MCAODC_08335 0.20 -0.6 1,671,183 - zapE MCAODC_08335 0.20 -0.1 1,671,183 - zapE MCAODC_08335 0.20 -1.0 1,671,183 - zapE MCAODC_08335 0.20 -1.1 1,671,183 - zapE MCAODC_08335 0.20 -0.2 1,671,183 - zapE MCAODC_08335 0.20 -0.1 1,671,183 - zapE MCAODC_08335 0.20 -0.1 1,671,183 - zapE MCAODC_08335 0.20 -0.4 1,671,184 + zapE MCAODC_08335 0.20 -0.8 1,671,184 + zapE MCAODC_08335 0.20 -1.9 1,671,184 + zapE MCAODC_08335 0.20 +0.6 1,671,184 + zapE MCAODC_08335 0.20 -1.6 1,671,184 + zapE MCAODC_08335 0.20 +2.1 1,671,184 + zapE MCAODC_08335 0.20 -0.6 1,671,184 + zapE MCAODC_08335 0.20 +0.0 1,671,184 + zapE MCAODC_08335 0.20 -1.2 1,671,184 + zapE MCAODC_08335 0.20 -0.5 1,671,184 + zapE MCAODC_08335 0.20 +1.0 1,671,184 + zapE MCAODC_08335 0.20 -0.3 1,671,184 + zapE MCAODC_08335 0.20 -0.9 1,671,184 + zapE MCAODC_08335 0.20 -0.4 1,671,184 + zapE MCAODC_08335 0.20 -0.6 1,671,184 + zapE MCAODC_08335 0.20 -0.2 1,671,185 - zapE MCAODC_08335 0.20 -0.5 1,671,185 - zapE MCAODC_08335 0.20 +2.5 1,671,185 - zapE MCAODC_08335 0.20 -0.4 1,671,185 - zapE MCAODC_08335 0.20 -1.3 1,671,185 - zapE MCAODC_08335 0.20 +0.5 1,671,185 - zapE MCAODC_08335 0.20 -0.8 1,671,185 - zapE MCAODC_08335 0.20 -0.1 1,671,185 - zapE MCAODC_08335 0.20 +0.9 1,671,185 - zapE MCAODC_08335 0.20 +0.5 1,671,185 - zapE MCAODC_08335 0.20 -0.9 1,671,185 - zapE MCAODC_08335 0.20 +0.0 1,671,185 - zapE MCAODC_08335 0.20 -0.4 1,671,185 - zapE MCAODC_08335 0.20 -0.0 1,671,185 - zapE MCAODC_08335 0.20 -0.0 1,671,185 - zapE MCAODC_08335 0.20 -0.9 1,671,185 - zapE MCAODC_08335 0.20 +0.8 1,671,185 - zapE MCAODC_08335 0.20 -1.4 1,671,185 - zapE MCAODC_08335 0.20 -1.5 1,671,186 + zapE MCAODC_08335 0.20 +0.5 1,671,186 + zapE MCAODC_08335 0.20 +0.3 1,671,186 + zapE MCAODC_08335 0.20 -1.6 1,671,186 + zapE MCAODC_08335 0.20 -1.3 1,671,186 + zapE MCAODC_08335 0.20 -2.7 1,671,186 + zapE MCAODC_08335 0.20 -0.8 1,671,186 + zapE MCAODC_08335 0.20 -0.3 1,671,186 + zapE MCAODC_08335 0.20 -3.0 1,671,186 + zapE MCAODC_08335 0.20 -3.7 1,671,186 + zapE MCAODC_08335 0.20 -1.2 1,671,186 + zapE MCAODC_08335 0.20 -0.9 1,671,186 + zapE MCAODC_08335 0.20 +0.5 1,671,186 + zapE MCAODC_08335 0.20 +0.5 1,671,186 + zapE MCAODC_08335 0.20 -1.0 1,671,186 + zapE MCAODC_08335 0.20 -1.0 1,671,186 + zapE MCAODC_08335 0.20 -0.9 1,671,186 + zapE MCAODC_08335 0.20 +0.1 1,671,187 - zapE MCAODC_08335 0.20 -2.6 1,671,187 - zapE MCAODC_08335 0.20 -0.6 1,671,187 - zapE MCAODC_08335 0.20 +0.5 1,671,187 - zapE MCAODC_08335 0.20 +0.1 1,671,187 - zapE MCAODC_08335 0.20 -2.1 1,671,187 - zapE MCAODC_08335 0.20 -0.3 1,671,187 - zapE MCAODC_08335 0.20 -0.4 1,671,187 - zapE MCAODC_08335 0.20 -1.8 1,671,187 - zapE MCAODC_08335 0.20 -0.7 1,671,187 - zapE MCAODC_08335 0.20 +0.1 1,671,200 + zapE MCAODC_08335 0.21 -1.1 1,671,285 + zapE MCAODC_08335 0.29 +0.2 1,671,308 + zapE MCAODC_08335 0.31 -1.3 1,671,308 + zapE MCAODC_08335 0.31 -1.0 1,671,308 + zapE MCAODC_08335 0.31 -0.0 1,671,309 - zapE MCAODC_08335 0.31 -0.3 1,671,309 - zapE MCAODC_08335 0.31 -0.4 1,671,309 - zapE MCAODC_08335 0.31 -2.2 1,671,317 + zapE MCAODC_08335 0.31 +0.0 1,671,408 + zapE MCAODC_08335 0.40 +0.4 1,671,408 + zapE MCAODC_08335 0.40 -0.1 1,671,408 + zapE MCAODC_08335 0.40 -0.9 1,671,409 - zapE MCAODC_08335 0.40 -1.1 1,671,409 - zapE MCAODC_08335 0.40 +2.1 1,671,426 - zapE MCAODC_08335 0.41 -0.0 1,671,426 - zapE MCAODC_08335 0.41 +0.3 1,671,465 + zapE MCAODC_08335 0.45 +0.6 1,671,572 + zapE MCAODC_08335 0.54 -0.2 1,671,572 + zapE MCAODC_08335 0.54 -1.5 1,671,572 + zapE MCAODC_08335 0.54 -1.0 1,671,572 + zapE MCAODC_08335 0.54 +0.2 1,671,573 - zapE MCAODC_08335 0.54 +0.3 1,671,573 - zapE MCAODC_08335 0.54 +0.4 1,671,609 + zapE MCAODC_08335 0.57 -0.3 1,671,609 + zapE MCAODC_08335 0.57 -0.5 1,671,610 - zapE MCAODC_08335 0.57 -0.5 1,671,610 - zapE MCAODC_08335 0.57 -0.9 1,671,677 + zapE MCAODC_08335 0.63 -0.8 1,671,677 + zapE MCAODC_08335 0.63 -0.9 1,671,677 + zapE MCAODC_08335 0.63 -0.2 1,671,678 - zapE MCAODC_08335 0.63 -0.1 1,671,678 - zapE MCAODC_08335 0.63 -0.9 1,671,678 - zapE MCAODC_08335 0.63 -0.1 1,671,786 + zapE MCAODC_08335 0.73 +0.5 1,671,787 - zapE MCAODC_08335 0.73 -0.4 1,671,789 + zapE MCAODC_08335 0.73 +0.3 1,671,789 + zapE MCAODC_08335 0.73 -0.4 1,671,789 + zapE MCAODC_08335 0.73 -0.8 1,671,789 + zapE MCAODC_08335 0.73 -0.9 1,671,790 - zapE MCAODC_08335 0.73 -0.6 1,671,790 - zapE MCAODC_08335 0.73 +0.5 1,671,790 - zapE MCAODC_08335 0.73 -0.1 1,671,823 + zapE MCAODC_08335 0.76 -0.2 1,671,823 + zapE MCAODC_08335 0.76 +0.5 1,671,823 + zapE MCAODC_08335 0.76 +0.3 1,671,823 + zapE MCAODC_08335 0.76 -0.4 1,671,823 + zapE MCAODC_08335 0.76 -0.2 1,671,823 + zapE MCAODC_08335 0.76 +0.5 1,671,824 - zapE MCAODC_08335 0.76 +0.8 1,671,824 - zapE MCAODC_08335 0.76 -0.1 1,671,824 - zapE MCAODC_08335 0.76 +0.1 1,671,824 - zapE MCAODC_08335 0.76 +0.2 1,671,825 + zapE MCAODC_08335 0.77 -1.1 1,671,825 + zapE MCAODC_08335 0.77 -1.4 1,671,826 - zapE MCAODC_08335 0.77 -0.0 1,671,826 - zapE MCAODC_08335 0.77 -0.2 1,671,850 - zapE MCAODC_08335 0.79 +0.0 1,671,850 - zapE MCAODC_08335 0.79 -2.6 1,671,850 - zapE MCAODC_08335 0.79 -0.5 1,671,869 + zapE MCAODC_08335 0.80 +0.1 1,671,870 - zapE MCAODC_08335 0.80 +0.8 1,671,870 - zapE MCAODC_08335 0.80 -2.0 1,671,912 + zapE MCAODC_08335 0.84 +0.3 1,671,912 + zapE MCAODC_08335 0.84 -0.1 1,671,953 + zapE MCAODC_08335 0.88 -1.9 1,671,953 + zapE MCAODC_08335 0.88 -1.1 1,671,953 + zapE MCAODC_08335 0.88 -0.5 1,671,954 - zapE MCAODC_08335 0.88 -0.5 1,671,979 + -0.5 1,671,980 - +0.1 1,672,060 + +0.6 1,672,061 - -3.0 1,672,080 - +0.5
Or see this region's nucleotide sequence