Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt accC and accB are separated by 10 nucleotides accB and acuI are separated by 977 nucleotides
MCAODC_08225: accC - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,643,969 to 1,645,318
accC
MCAODC_08230: accB - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,645,329 to 1,645,799
accB
MCAODC_08235: acuI - putative acrylyl-CoA reductase AcuI, at 1,646,777 to 1,647,751
acuI
Position (kb)
1645
1646 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1645.882 kb on - strand at 1645.882 kb on - strand at 1645.882 kb on - strand at 1646.073 kb on + strand at 1646.113 kb on + strand at 1646.137 kb on - strand at 1646.137 kb on - strand at 1646.143 kb on + strand at 1646.143 kb on + strand at 1646.148 kb on - strand at 1646.221 kb on + strand at 1646.221 kb on + strand at 1646.228 kb on + strand at 1646.228 kb on + strand at 1646.228 kb on + strand at 1646.228 kb on + strand at 1646.228 kb on + strand at 1646.228 kb on + strand at 1646.229 kb on - strand at 1646.282 kb on - strand at 1646.301 kb on + strand at 1646.301 kb on + strand at 1646.301 kb on + strand at 1646.302 kb on - strand at 1646.302 kb on - strand at 1646.302 kb on - strand at 1646.307 kb on - strand at 1646.307 kb on - strand at 1646.342 kb on - strand at 1646.342 kb on - strand at 1646.342 kb on - strand at 1646.389 kb on + strand at 1646.389 kb on + strand at 1646.389 kb on + strand at 1646.402 kb on + strand at 1646.403 kb on - strand at 1646.403 kb on - strand at 1646.441 kb on + strand at 1646.441 kb on + strand at 1646.442 kb on - strand at 1646.442 kb on - strand at 1646.442 kb on - strand at 1646.442 kb on - strand at 1646.445 kb on + strand at 1646.445 kb on + strand at 1646.485 kb on + strand at 1646.508 kb on + strand at 1646.508 kb on + strand at 1646.508 kb on + strand at 1646.508 kb on + strand at 1646.509 kb on - strand at 1646.509 kb on - strand at 1646.512 kb on + strand at 1646.512 kb on + strand at 1646.513 kb on - strand at 1646.513 kb on - strand at 1646.520 kb on + strand at 1646.526 kb on + strand at 1646.527 kb on - strand at 1646.550 kb on + strand at 1646.550 kb on + strand at 1646.550 kb on + strand at 1646.550 kb on + strand at 1646.551 kb on - strand at 1646.574 kb on + strand at 1646.575 kb on - strand at 1646.580 kb on + strand at 1646.581 kb on - strand at 1646.583 kb on + strand at 1646.583 kb on + strand at 1646.583 kb on + strand at 1646.584 kb on - strand at 1646.599 kb on + strand at 1646.600 kb on - strand at 1646.617 kb on + strand at 1646.618 kb on - strand at 1646.660 kb on + strand at 1646.660 kb on + strand at 1646.660 kb on + strand at 1646.660 kb on + strand at 1646.730 kb on - strand at 1646.757 kb on + strand at 1646.757 kb on + strand at 1646.758 kb on - strand at 1646.760 kb on + strand at 1646.760 kb on + strand at 1646.760 kb on + strand at 1646.760 kb on + strand at 1646.761 kb on - strand at 1646.761 kb on - strand at 1646.761 kb on - strand at 1646.761 kb on - strand at 1646.770 kb on + strand at 1646.770 kb on + strand at 1646.771 kb on - strand at 1646.778 kb on + strand at 1646.782 kb on + strand at 1646.783 kb on - strand at 1646.783 kb on - strand at 1646.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,645,882 - +0.7 1,645,882 - +0.9 1,645,882 - -0.8 1,646,073 + -0.9 1,646,113 + +0.4 1,646,137 - -0.6 1,646,137 - -1.0 1,646,143 + +0.9 1,646,143 + -0.9 1,646,148 - -0.1 1,646,221 + +0.1 1,646,221 + +1.6 1,646,228 + +0.0 1,646,228 + +1.2 1,646,228 + +0.1 1,646,228 + +0.4 1,646,228 + +0.1 1,646,228 + -0.4 1,646,229 - -2.8 1,646,282 - +0.8 1,646,301 + +0.7 1,646,301 + +0.5 1,646,301 + +1.0 1,646,302 - -0.1 1,646,302 - +0.6 1,646,302 - -0.5 1,646,307 - -0.4 1,646,307 - -0.4 1,646,342 - +0.8 1,646,342 - -0.2 1,646,342 - +0.7 1,646,389 + +0.5 1,646,389 + -0.3 1,646,389 + +2.3 1,646,402 + +0.8 1,646,403 - +0.0 1,646,403 - +0.6 1,646,441 + +0.8 1,646,441 + +0.4 1,646,442 - +0.3 1,646,442 - +0.1 1,646,442 - +0.1 1,646,442 - -1.3 1,646,445 + +0.6 1,646,445 + +0.9 1,646,485 + -0.0 1,646,508 + +0.6 1,646,508 + -3.0 1,646,508 + -1.7 1,646,508 + +0.1 1,646,509 - -0.9 1,646,509 - +0.7 1,646,512 + +1.0 1,646,512 + -0.3 1,646,513 - -0.9 1,646,513 - -3.5 1,646,520 + +0.7 1,646,526 + +0.5 1,646,527 - +0.2 1,646,550 + -0.4 1,646,550 + -0.1 1,646,550 + +0.3 1,646,550 + -0.3 1,646,551 - -0.0 1,646,574 + -0.9 1,646,575 - +1.1 1,646,580 + +0.3 1,646,581 - +0.3 1,646,583 + +0.6 1,646,583 + +0.1 1,646,583 + -0.6 1,646,584 - -0.1 1,646,599 + +0.3 1,646,600 - +0.5 1,646,617 + +0.3 1,646,618 - -0.3 1,646,660 + -0.6 1,646,660 + -1.5 1,646,660 + +0.5 1,646,660 + -0.6 1,646,730 - -0.5 1,646,757 + +0.9 1,646,757 + -0.1 1,646,758 - -1.0 1,646,760 + -0.0 1,646,760 + -0.3 1,646,760 + +0.4 1,646,760 + -0.6 1,646,761 - +0.8 1,646,761 - +0.8 1,646,761 - -2.1 1,646,761 - +0.2 1,646,770 + +1.0 1,646,770 + -0.0 1,646,771 - -0.2 1,646,778 + -0.2 1,646,782 + -2.0 1,646,783 - -0.7 1,646,783 - -1.0 1,646,783 - +0.2
Or see this region's nucleotide sequence