Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnG and MCAODC_04615 are separated by 111 nucleotides MCAODC_04615 and hemN are separated by 189 nucleotides
MCAODC_04610: glnG - nitrogen regulation protein NR(I), at 934,961 to 936,370
glnG
MCAODC_04615: MCAODC_04615 - Uncharacterized protein YshB, at 936,482 to 936,592
_04615
MCAODC_04620: hemN - oxygen-independent coproporphyrinogen III oxidase, at 936,782 to 938,155
hemN
Position (kb) 936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 935.536 kb on + strand, within glnG at 935.623 kb on + strand, within glnG at 935.624 kb on - strand, within glnG at 935.662 kb on + strand, within glnG at 935.663 kb on - strand, within glnG at 935.663 kb on - strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.668 kb on - strand, within glnG at 935.668 kb on - strand, within glnG at 935.833 kb on + strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.911 kb on + strand, within glnG at 935.911 kb on + strand, within glnG at 935.912 kb on - strand, within glnG at 935.964 kb on + strand, within glnG at 935.965 kb on - strand, within glnG at 935.965 kb on - strand, within glnG at 936.140 kb on - strand, within glnG at 936.280 kb on + strand at 936.281 kb on - strand at 936.343 kb on + strand at 936.397 kb on + strand at 936.398 kb on - strand at 936.418 kb on - strand at 936.429 kb on + strand at 936.429 kb on + strand at 936.430 kb on - strand at 936.441 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.496 kb on - strand, within MCAODC_04615 at 936.499 kb on + strand, within MCAODC_04615 at 936.500 kb on - strand, within MCAODC_04615 at 936.587 kb on - strand at 936.587 kb on - strand at 936.587 kb on - strand at 936.754 kb on - strand at 936.760 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.784 kb on - strand at 936.784 kb on - strand at 936.828 kb on + strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.887 kb on + strand at 936.887 kb on + strand at 936.961 kb on - strand, within hemN at 936.961 kb on - strand, within hemN at 936.994 kb on + strand, within hemN at 937.002 kb on + strand, within hemN at 937.034 kb on - strand, within hemN at 937.052 kb on - strand, within hemN at 937.076 kb on - strand, within hemN at 937.116 kb on + strand, within hemN at 937.117 kb on - strand, within hemN at 937.117 kb on - strand, within hemN at 937.119 kb on + strand, within hemN at 937.119 kb on + strand, within hemN at 937.120 kb on - strand, within hemN at 937.149 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.431 kb on + strand, within hemN at 937.432 kb on - strand, within hemN at 937.432 kb on - strand, within hemN at 937.432 kb on - strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.435 kb on + strand, within hemN at 937.436 kb on - strand, within hemN at 937.436 kb on - strand, within hemN at 937.460 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.546 kb on + strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.547 kb on - strand, within hemN at 937.571 kb on - strand, within hemN at 937.571 kb on - strand, within hemN at 937.586 kb on - strand, within hemN
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 935,536 + glnG MCAODC_04610 0.41 +0.4 935,623 + glnG MCAODC_04610 0.47 -0.7 935,624 - glnG MCAODC_04610 0.47 +0.1 935,662 + glnG MCAODC_04610 0.50 +1.0 935,663 - glnG MCAODC_04610 0.50 +1.4 935,663 - glnG MCAODC_04610 0.50 +0.0 935,667 + glnG MCAODC_04610 0.50 -0.0 935,667 + glnG MCAODC_04610 0.50 -0.0 935,667 + glnG MCAODC_04610 0.50 +0.1 935,667 + glnG MCAODC_04610 0.50 -0.8 935,667 + glnG MCAODC_04610 0.50 -0.3 935,667 + glnG MCAODC_04610 0.50 -0.2 935,667 + glnG MCAODC_04610 0.50 +0.5 935,668 - glnG MCAODC_04610 0.50 +0.2 935,668 - glnG MCAODC_04610 0.50 -0.3 935,833 + glnG MCAODC_04610 0.62 +0.3 935,834 - glnG MCAODC_04610 0.62 +1.8 935,834 - glnG MCAODC_04610 0.62 -0.8 935,834 - glnG MCAODC_04610 0.62 -1.6 935,911 + glnG MCAODC_04610 0.67 +0.5 935,911 + glnG MCAODC_04610 0.67 -1.2 935,912 - glnG MCAODC_04610 0.67 -0.0 935,964 + glnG MCAODC_04610 0.71 +0.7 935,965 - glnG MCAODC_04610 0.71 -0.9 935,965 - glnG MCAODC_04610 0.71 +1.5 936,140 - glnG MCAODC_04610 0.84 -0.3 936,280 + +0.1 936,281 - +0.5 936,343 + -2.7 936,397 + -0.8 936,398 - +0.5 936,418 - -0.6 936,429 + +0.1 936,429 + -0.1 936,430 - -0.0 936,441 - -0.2 936,482 - -0.1 936,482 - -0.1 936,482 - +0.9 936,496 - MCAODC_04615 0.13 -0.3 936,499 + MCAODC_04615 0.15 -0.8 936,500 - MCAODC_04615 0.16 +0.2 936,587 - -0.1 936,587 - +0.8 936,587 - -0.2 936,754 - +0.7 936,760 + +0.2 936,783 + -0.6 936,783 + +0.1 936,783 + +0.4 936,783 + +0.7 936,784 - -0.1 936,784 - -1.6 936,828 + +0.4 936,829 - -0.1 936,829 - -2.0 936,829 - -0.1 936,829 - +1.6 936,829 - +1.7 936,832 + +0.9 936,832 + +0.2 936,832 + -0.9 936,887 + -2.2 936,887 + -1.1 936,961 - hemN MCAODC_04620 0.13 +0.7 936,961 - hemN MCAODC_04620 0.13 -0.3 936,994 + hemN MCAODC_04620 0.15 +0.8 937,002 + hemN MCAODC_04620 0.16 +0.5 937,034 - hemN MCAODC_04620 0.18 +0.9 937,052 - hemN MCAODC_04620 0.20 +0.2 937,076 - hemN MCAODC_04620 0.21 +0.7 937,116 + hemN MCAODC_04620 0.24 -1.4 937,117 - hemN MCAODC_04620 0.24 +0.9 937,117 - hemN MCAODC_04620 0.24 +0.3 937,119 + hemN MCAODC_04620 0.25 -1.3 937,119 + hemN MCAODC_04620 0.25 +0.1 937,120 - hemN MCAODC_04620 0.25 +0.0 937,149 + hemN MCAODC_04620 0.27 +2.5 937,431 + hemN MCAODC_04620 0.47 -0.9 937,431 + hemN MCAODC_04620 0.47 -1.4 937,431 + hemN MCAODC_04620 0.47 +3.2 937,432 - hemN MCAODC_04620 0.47 +1.8 937,432 - hemN MCAODC_04620 0.47 +1.2 937,432 - hemN MCAODC_04620 0.47 +1.4 937,435 + hemN MCAODC_04620 0.48 -0.3 937,435 + hemN MCAODC_04620 0.48 -1.0 937,435 + hemN MCAODC_04620 0.48 -3.0 937,435 + hemN MCAODC_04620 0.48 -0.5 937,436 - hemN MCAODC_04620 0.48 -1.8 937,436 - hemN MCAODC_04620 0.48 +0.5 937,460 + hemN MCAODC_04620 0.49 +0.5 937,546 + hemN MCAODC_04620 0.56 -0.6 937,546 + hemN MCAODC_04620 0.56 -0.8 937,546 + hemN MCAODC_04620 0.56 +1.3 937,547 - hemN MCAODC_04620 0.56 +0.7 937,547 - hemN MCAODC_04620 0.56 +1.8 937,547 - hemN MCAODC_04620 0.56 +1.1 937,547 - hemN MCAODC_04620 0.56 +1.9 937,571 - hemN MCAODC_04620 0.57 +1.5 937,571 - hemN MCAODC_04620 0.57 -0.5 937,586 - hemN MCAODC_04620 0.59 +0.4
Or see this region's nucleotide sequence