Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_04540 and tauE are separated by 60 nucleotides tauE and yihQ are separated by 107 nucleotides
MCAODC_04540: MCAODC_04540 - Aldose epimerase, at 919,133 to 920,035
_04540
MCAODC_04545: tauE - Sulfite exporter TauE/SafE, at 920,096 to 920,971
tauE
MCAODC_04550: yihQ - sulfoquinovosidase, at 921,079 to 923,115
yihQ
Position (kb) 920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 919.104 kb on + strand at 919.105 kb on - strand at 919.105 kb on - strand at 919.119 kb on + strand at 919.119 kb on + strand at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.258 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.309 kb on + strand, within MCAODC_04540 at 919.365 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.491 kb on - strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.599 kb on - strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.624 kb on - strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540 at 920.074 kb on + strand at 920.092 kb on + strand at 920.093 kb on - strand at 920.151 kb on + strand at 920.152 kb on - strand at 920.155 kb on + strand at 920.155 kb on + strand at 920.156 kb on - strand at 920.181 kb on - strand at 920.182 kb on + strand at 920.183 kb on - strand at 920.228 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.307 kb on - strand, within tauE at 920.356 kb on - strand, within tauE at 920.396 kb on + strand, within tauE at 920.397 kb on - strand, within tauE at 920.409 kb on - strand, within tauE at 920.409 kb on - strand, within tauE at 920.413 kb on - strand, within tauE at 920.459 kb on + strand, within tauE at 920.460 kb on - strand, within tauE at 920.468 kb on + strand, within tauE at 920.469 kb on - strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.473 kb on + strand, within tauE at 920.474 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.480 kb on - strand, within tauE at 920.506 kb on + strand, within tauE at 920.524 kb on + strand, within tauE at 920.525 kb on - strand, within tauE at 920.525 kb on - strand, within tauE at 920.535 kb on + strand, within tauE at 920.547 kb on + strand, within tauE at 920.548 kb on - strand, within tauE at 920.588 kb on + strand, within tauE at 920.588 kb on + strand, within tauE at 920.588 kb on + strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.589 kb on - strand, within tauE at 920.602 kb on + strand, within tauE at 920.603 kb on - strand, within tauE at 920.603 kb on - strand, within tauE at 920.607 kb on + strand, within tauE at 920.608 kb on - strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.768 kb on + strand, within tauE at 920.769 kb on - strand, within tauE at 920.776 kb on + strand, within tauE at 920.777 kb on - strand, within tauE at 920.818 kb on - strand, within tauE at 920.818 kb on - strand, within tauE at 920.923 kb on - strand at 921.059 kb on - strand at 921.210 kb on + strand at 921.225 kb on + strand at 921.255 kb on + strand at 921.346 kb on - strand, within yihQ at 921.346 kb on - strand, within yihQ at 921.360 kb on + strand, within yihQ at 921.361 kb on - strand, within yihQ at 921.399 kb on - strand, within yihQ at 921.462 kb on + strand, within yihQ at 921.462 kb on + strand, within yihQ at 921.462 kb on + strand, within yihQ at 921.462 kb on + strand, within yihQ at 921.462 kb on + strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.463 kb on - strand, within yihQ at 921.466 kb on + strand, within yihQ at 921.467 kb on - strand, within yihQ at 921.467 kb on - strand, within yihQ at 921.467 kb on - strand, within yihQ at 921.490 kb on + strand, within yihQ at 921.562 kb on + strand, within yihQ at 921.562 kb on + strand, within yihQ at 921.562 kb on + strand, within yihQ at 921.562 kb on + strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.563 kb on - strand, within yihQ at 921.607 kb on + strand, within yihQ at 921.608 kb on - strand, within yihQ at 921.610 kb on + strand, within yihQ at 921.610 kb on + strand, within yihQ at 921.633 kb on + strand, within yihQ at 921.634 kb on - strand, within yihQ at 921.634 kb on - strand, within yihQ at 921.655 kb on + strand, within yihQ at 921.655 kb on + strand, within yihQ at 921.655 kb on + strand, within yihQ at 921.656 kb on - strand, within yihQ at 921.656 kb on - strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.682 kb on + strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.683 kb on - strand, within yihQ at 921.685 kb on - strand, within yihQ at 921.699 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.772 kb on + strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.773 kb on - strand, within yihQ at 921.838 kb on + strand, within yihQ at 921.839 kb on - strand, within yihQ at 921.848 kb on + strand, within yihQ at 921.907 kb on - strand, within yihQ at 921.960 kb on + strand, within yihQ at 921.960 kb on + strand, within yihQ at 921.961 kb on - strand, within yihQ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 919,104 + +0.1 919,105 - +0.5 919,105 - +0.3 919,119 + +0.7 919,119 + -0.5 919,254 + MCAODC_04540 0.13 -0.0 919,254 + MCAODC_04540 0.13 +0.9 919,254 + MCAODC_04540 0.13 +0.0 919,255 - MCAODC_04540 0.14 -0.1 919,255 - MCAODC_04540 0.14 -0.8 919,258 + MCAODC_04540 0.14 -0.8 919,267 + MCAODC_04540 0.15 -0.3 919,267 + MCAODC_04540 0.15 -0.3 919,268 - MCAODC_04540 0.15 +0.2 919,268 - MCAODC_04540 0.15 -1.2 919,309 + MCAODC_04540 0.19 -1.4 919,365 - MCAODC_04540 0.26 +1.0 919,447 - MCAODC_04540 0.35 +0.2 919,447 - MCAODC_04540 0.35 +0.1 919,491 - MCAODC_04540 0.40 -0.1 919,598 + MCAODC_04540 0.51 +1.1 919,598 + MCAODC_04540 0.51 +0.1 919,598 + MCAODC_04540 0.51 +1.3 919,599 - MCAODC_04540 0.52 -0.6 919,619 + MCAODC_04540 0.54 +0.1 919,619 + MCAODC_04540 0.54 +0.8 919,624 - MCAODC_04540 0.54 +0.1 919,635 + MCAODC_04540 0.56 -0.0 919,635 + MCAODC_04540 0.56 -0.8 919,635 + MCAODC_04540 0.56 -0.8 919,635 + MCAODC_04540 0.56 +0.3 919,652 + MCAODC_04540 0.57 +1.8 919,652 + MCAODC_04540 0.57 -2.4 919,653 - MCAODC_04540 0.58 +0.4 919,653 - MCAODC_04540 0.58 +1.3 920,074 + +0.4 920,092 + -1.4 920,093 - -1.3 920,151 + +0.6 920,152 - +0.6 920,155 + +0.4 920,155 + +0.4 920,156 - -0.9 920,181 - -0.2 920,182 + +0.3 920,183 - -1.1 920,228 - tauE MCAODC_04545 0.15 -1.1 920,307 - tauE MCAODC_04545 0.24 -1.5 920,307 - tauE MCAODC_04545 0.24 +0.7 920,307 - tauE MCAODC_04545 0.24 -0.4 920,356 - tauE MCAODC_04545 0.30 +0.6 920,396 + tauE MCAODC_04545 0.34 +1.6 920,397 - tauE MCAODC_04545 0.34 +0.4 920,409 - tauE MCAODC_04545 0.36 +0.5 920,409 - tauE MCAODC_04545 0.36 +0.5 920,413 - tauE MCAODC_04545 0.36 +0.2 920,459 + tauE MCAODC_04545 0.41 -0.9 920,460 - tauE MCAODC_04545 0.42 +0.0 920,468 + tauE MCAODC_04545 0.42 +1.2 920,469 - tauE MCAODC_04545 0.43 +0.9 920,473 + tauE MCAODC_04545 0.43 +0.6 920,473 + tauE MCAODC_04545 0.43 -0.3 920,473 + tauE MCAODC_04545 0.43 -0.8 920,473 + tauE MCAODC_04545 0.43 -1.2 920,473 + tauE MCAODC_04545 0.43 -0.9 920,474 - tauE MCAODC_04545 0.43 +1.2 920,480 - tauE MCAODC_04545 0.44 -0.2 920,480 - tauE MCAODC_04545 0.44 +0.3 920,480 - tauE MCAODC_04545 0.44 -0.8 920,506 + tauE MCAODC_04545 0.47 +0.5 920,524 + tauE MCAODC_04545 0.49 -0.3 920,525 - tauE MCAODC_04545 0.49 +1.0 920,525 - tauE MCAODC_04545 0.49 +0.8 920,535 + tauE MCAODC_04545 0.50 -0.0 920,547 + tauE MCAODC_04545 0.51 -0.0 920,548 - tauE MCAODC_04545 0.52 +0.8 920,588 + tauE MCAODC_04545 0.56 -0.5 920,588 + tauE MCAODC_04545 0.56 +0.5 920,588 + tauE MCAODC_04545 0.56 +0.0 920,589 - tauE MCAODC_04545 0.56 +0.2 920,589 - tauE MCAODC_04545 0.56 +0.1 920,589 - tauE MCAODC_04545 0.56 -0.7 920,589 - tauE MCAODC_04545 0.56 -0.3 920,589 - tauE MCAODC_04545 0.56 +0.8 920,602 + tauE MCAODC_04545 0.58 +0.3 920,603 - tauE MCAODC_04545 0.58 -0.5 920,603 - tauE MCAODC_04545 0.58 +1.0 920,607 + tauE MCAODC_04545 0.58 -2.2 920,608 - tauE MCAODC_04545 0.58 +0.3 920,768 + tauE MCAODC_04545 0.77 -0.8 920,768 + tauE MCAODC_04545 0.77 +0.4 920,768 + tauE MCAODC_04545 0.77 -0.5 920,768 + tauE MCAODC_04545 0.77 -0.7 920,769 - tauE MCAODC_04545 0.77 -0.4 920,776 + tauE MCAODC_04545 0.78 -0.4 920,777 - tauE MCAODC_04545 0.78 +1.1 920,818 - tauE MCAODC_04545 0.82 +0.1 920,818 - tauE MCAODC_04545 0.82 -0.2 920,923 - +0.5 921,059 - +0.3 921,210 + -0.5 921,225 + +0.1 921,255 + +0.3 921,346 - yihQ MCAODC_04550 0.13 +0.3 921,346 - yihQ MCAODC_04550 0.13 -0.2 921,360 + yihQ MCAODC_04550 0.14 -0.7 921,361 - yihQ MCAODC_04550 0.14 +0.5 921,399 - yihQ MCAODC_04550 0.16 -0.0 921,462 + yihQ MCAODC_04550 0.19 -0.4 921,462 + yihQ MCAODC_04550 0.19 +0.4 921,462 + yihQ MCAODC_04550 0.19 -0.3 921,462 + yihQ MCAODC_04550 0.19 +0.3 921,462 + yihQ MCAODC_04550 0.19 -1.5 921,463 - yihQ MCAODC_04550 0.19 -0.1 921,463 - yihQ MCAODC_04550 0.19 -0.1 921,463 - yihQ MCAODC_04550 0.19 +0.8 921,463 - yihQ MCAODC_04550 0.19 +1.2 921,463 - yihQ MCAODC_04550 0.19 -0.5 921,463 - yihQ MCAODC_04550 0.19 +0.5 921,466 + yihQ MCAODC_04550 0.19 -0.1 921,467 - yihQ MCAODC_04550 0.19 -1.6 921,467 - yihQ MCAODC_04550 0.19 -1.6 921,467 - yihQ MCAODC_04550 0.19 -0.8 921,490 + yihQ MCAODC_04550 0.20 -0.7 921,562 + yihQ MCAODC_04550 0.24 +0.5 921,562 + yihQ MCAODC_04550 0.24 -0.5 921,562 + yihQ MCAODC_04550 0.24 +0.8 921,562 + yihQ MCAODC_04550 0.24 +0.7 921,563 - yihQ MCAODC_04550 0.24 -0.5 921,563 - yihQ MCAODC_04550 0.24 -0.4 921,563 - yihQ MCAODC_04550 0.24 +0.2 921,563 - yihQ MCAODC_04550 0.24 +0.4 921,563 - yihQ MCAODC_04550 0.24 -0.1 921,563 - yihQ MCAODC_04550 0.24 +0.5 921,563 - yihQ MCAODC_04550 0.24 -1.6 921,607 + yihQ MCAODC_04550 0.26 +0.5 921,608 - yihQ MCAODC_04550 0.26 +0.1 921,610 + yihQ MCAODC_04550 0.26 +0.2 921,610 + yihQ MCAODC_04550 0.26 +2.2 921,633 + yihQ MCAODC_04550 0.27 -0.5 921,634 - yihQ MCAODC_04550 0.27 +1.0 921,634 - yihQ MCAODC_04550 0.27 +1.1 921,655 + yihQ MCAODC_04550 0.28 +0.3 921,655 + yihQ MCAODC_04550 0.28 +0.7 921,655 + yihQ MCAODC_04550 0.28 -0.1 921,656 - yihQ MCAODC_04550 0.28 +0.4 921,656 - yihQ MCAODC_04550 0.28 -0.7 921,682 + yihQ MCAODC_04550 0.30 -0.3 921,682 + yihQ MCAODC_04550 0.30 -1.2 921,682 + yihQ MCAODC_04550 0.30 -0.1 921,682 + yihQ MCAODC_04550 0.30 -0.1 921,682 + yihQ MCAODC_04550 0.30 +0.7 921,682 + yihQ MCAODC_04550 0.30 +0.6 921,683 - yihQ MCAODC_04550 0.30 +0.6 921,683 - yihQ MCAODC_04550 0.30 -0.6 921,683 - yihQ MCAODC_04550 0.30 -1.7 921,683 - yihQ MCAODC_04550 0.30 -0.1 921,683 - yihQ MCAODC_04550 0.30 +0.1 921,683 - yihQ MCAODC_04550 0.30 +0.1 921,683 - yihQ MCAODC_04550 0.30 +0.8 921,685 - yihQ MCAODC_04550 0.30 -0.4 921,699 + yihQ MCAODC_04550 0.30 +1.2 921,772 + yihQ MCAODC_04550 0.34 -0.3 921,772 + yihQ MCAODC_04550 0.34 +0.6 921,772 + yihQ MCAODC_04550 0.34 +0.3 921,772 + yihQ MCAODC_04550 0.34 -1.4 921,772 + yihQ MCAODC_04550 0.34 -0.0 921,772 + yihQ MCAODC_04550 0.34 +0.3 921,772 + yihQ MCAODC_04550 0.34 +1.1 921,772 + yihQ MCAODC_04550 0.34 -0.4 921,772 + yihQ MCAODC_04550 0.34 -0.2 921,772 + yihQ MCAODC_04550 0.34 +0.1 921,772 + yihQ MCAODC_04550 0.34 +0.2 921,772 + yihQ MCAODC_04550 0.34 +1.7 921,772 + yihQ MCAODC_04550 0.34 +1.1 921,773 - yihQ MCAODC_04550 0.34 +0.3 921,773 - yihQ MCAODC_04550 0.34 -0.4 921,773 - yihQ MCAODC_04550 0.34 +0.6 921,773 - yihQ MCAODC_04550 0.34 +1.7 921,773 - yihQ MCAODC_04550 0.34 -0.5 921,773 - yihQ MCAODC_04550 0.34 -1.9 921,773 - yihQ MCAODC_04550 0.34 +0.3 921,773 - yihQ MCAODC_04550 0.34 +0.1 921,773 - yihQ MCAODC_04550 0.34 +1.6 921,773 - yihQ MCAODC_04550 0.34 -1.6 921,773 - yihQ MCAODC_04550 0.34 +0.0 921,773 - yihQ MCAODC_04550 0.34 +0.1 921,773 - yihQ MCAODC_04550 0.34 +0.6 921,773 - yihQ MCAODC_04550 0.34 -0.2 921,773 - yihQ MCAODC_04550 0.34 -1.1 921,773 - yihQ MCAODC_04550 0.34 +1.5 921,773 - yihQ MCAODC_04550 0.34 +0.7 921,838 + yihQ MCAODC_04550 0.37 -0.2 921,839 - yihQ MCAODC_04550 0.37 +0.3 921,848 + yihQ MCAODC_04550 0.38 +0.1 921,907 - yihQ MCAODC_04550 0.41 -2.9 921,960 + yihQ MCAODC_04550 0.43 +0.3 921,960 + yihQ MCAODC_04550 0.43 -0.0 921,961 - yihQ MCAODC_04550 0.43 +1.1
Or see this region's nucleotide sequence