Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabY and dtd are separated by 44 nucleotides dtd and yihY overlap by 4 nucleotides yihY and yihX overlap by 7 nucleotides
MCAODC_04495: fabY - fatty acid biosynthesis protein FabY, at 911,144 to 912,085
fabY
MCAODC_04500: dtd - D-aminoacyl-tRNA deacylase, at 912,130 to 912,567
dtd
MCAODC_04505: yihY - virulence factor BrkB family protein, at 912,564 to 913,436
yihY
MCAODC_04510: yihX - glucose-1-phosphatase, at 913,430 to 914,029
yihX
Position (kb) 912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 911.145 kb on + strand at 911.146 kb on - strand at 911.204 kb on - strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.205 kb on + strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.206 kb on - strand at 911.362 kb on - strand, within fabY at 911.429 kb on - strand, within fabY at 911.462 kb on + strand, within fabY at 911.482 kb on + strand, within fabY at 911.483 kb on - strand, within fabY at 911.518 kb on + strand, within fabY at 911.518 kb on + strand, within fabY at 911.518 kb on + strand, within fabY at 911.519 kb on - strand, within fabY at 911.519 kb on - strand, within fabY at 911.539 kb on + strand, within fabY at 911.540 kb on - strand, within fabY at 911.540 kb on - strand, within fabY at 911.541 kb on + strand, within fabY at 911.541 kb on + strand, within fabY at 911.541 kb on + strand, within fabY at 911.542 kb on - strand, within fabY at 911.542 kb on - strand, within fabY at 911.542 kb on - strand, within fabY at 911.542 kb on - strand, within fabY at 911.581 kb on + strand, within fabY at 911.589 kb on + strand, within fabY at 911.590 kb on - strand, within fabY at 911.590 kb on - strand, within fabY at 911.590 kb on - strand, within fabY at 911.635 kb on + strand, within fabY at 911.659 kb on + strand, within fabY at 911.896 kb on + strand, within fabY at 911.896 kb on + strand, within fabY at 911.896 kb on + strand, within fabY at 911.897 kb on - strand, within fabY at 911.899 kb on + strand, within fabY at 911.900 kb on - strand, within fabY at 911.900 kb on - strand, within fabY at 911.901 kb on + strand, within fabY at 911.901 kb on + strand, within fabY at 911.901 kb on + strand, within fabY at 911.901 kb on + strand, within fabY at 911.901 kb on + strand, within fabY at 911.902 kb on - strand, within fabY at 911.902 kb on - strand, within fabY at 911.902 kb on - strand, within fabY at 911.902 kb on - strand, within fabY at 911.912 kb on + strand, within fabY at 912.011 kb on - strand at 912.036 kb on + strand at 912.037 kb on - strand at 912.039 kb on + strand at 912.039 kb on + strand at 912.039 kb on + strand at 912.039 kb on + strand at 912.048 kb on - strand at 912.048 kb on - strand at 912.081 kb on + strand at 912.081 kb on + strand at 912.081 kb on + strand at 912.081 kb on + strand at 912.082 kb on - strand at 912.082 kb on - strand at 912.082 kb on - strand at 912.082 kb on - strand at 912.082 kb on - strand at 912.082 kb on - strand at 912.085 kb on + strand at 912.085 kb on + strand at 912.085 kb on + strand at 912.086 kb on - strand at 912.086 kb on - strand at 912.091 kb on + strand at 912.091 kb on + strand at 912.092 kb on - strand at 912.133 kb on + strand at 912.134 kb on - strand at 912.134 kb on - strand at 912.176 kb on - strand, within dtd at 912.245 kb on + strand, within dtd at 912.245 kb on + strand, within dtd at 912.246 kb on - strand, within dtd at 912.251 kb on + strand, within dtd at 912.251 kb on + strand, within dtd at 912.251 kb on + strand, within dtd at 912.251 kb on + strand, within dtd at 912.252 kb on - strand, within dtd at 912.252 kb on - strand, within dtd at 912.252 kb on - strand, within dtd at 912.252 kb on - strand, within dtd at 912.253 kb on + strand, within dtd at 912.253 kb on + strand, within dtd at 912.253 kb on + strand, within dtd at 912.254 kb on - strand, within dtd at 912.331 kb on - strand, within dtd at 912.403 kb on - strand, within dtd at 912.478 kb on + strand, within dtd at 912.478 kb on + strand, within dtd at 912.557 kb on - strand at 912.603 kb on + strand at 912.603 kb on + strand at 912.614 kb on - strand at 912.656 kb on + strand, within yihY at 912.656 kb on + strand, within yihY at 912.657 kb on - strand, within yihY at 912.712 kb on + strand, within yihY at 912.743 kb on + strand, within yihY at 912.745 kb on + strand, within yihY at 912.822 kb on + strand, within yihY at 912.833 kb on + strand, within yihY at 912.833 kb on + strand, within yihY at 912.914 kb on + strand, within yihY at 912.915 kb on - strand, within yihY at 912.915 kb on - strand, within yihY at 912.950 kb on - strand, within yihY at 913.009 kb on + strand, within yihY at 913.084 kb on + strand, within yihY at 913.084 kb on + strand, within yihY at 913.084 kb on + strand, within yihY at 913.085 kb on - strand, within yihY at 913.085 kb on - strand, within yihY at 913.085 kb on - strand, within yihY at 913.085 kb on - strand, within yihY at 913.168 kb on + strand, within yihY at 913.178 kb on + strand, within yihY at 913.178 kb on + strand, within yihY at 913.190 kb on + strand, within yihY at 913.215 kb on - strand, within yihY at 913.224 kb on + strand, within yihY at 913.225 kb on - strand, within yihY at 913.297 kb on - strand, within yihY at 913.315 kb on + strand, within yihY at 913.315 kb on + strand, within yihY at 913.315 kb on + strand, within yihY at 913.316 kb on - strand, within yihY at 913.343 kb on + strand, within yihY at 913.343 kb on + strand, within yihY at 913.343 kb on + strand, within yihY at 913.343 kb on + strand, within yihY at 913.343 kb on + strand, within yihY at 913.343 kb on + strand, within yihY at 913.344 kb on - strand, within yihY at 913.344 kb on - strand, within yihY at 913.344 kb on - strand, within yihY at 913.344 kb on - strand, within yihY at 913.371 kb on + strand at 913.371 kb on + strand at 913.372 kb on - strand at 913.389 kb on + strand at 913.436 kb on + strand at 913.471 kb on + strand at 913.471 kb on + strand at 913.471 kb on + strand at 913.471 kb on + strand at 913.472 kb on - strand at 913.492 kb on + strand, within yihX at 913.492 kb on + strand, within yihX at 913.507 kb on + strand, within yihX at 913.507 kb on + strand, within yihX at 913.508 kb on - strand, within yihX at 913.508 kb on - strand, within yihX at 913.508 kb on - strand, within yihX at 913.517 kb on + strand, within yihX at 913.517 kb on + strand, within yihX at 913.517 kb on + strand, within yihX at 913.517 kb on + strand, within yihX at 913.517 kb on + strand, within yihX at 913.517 kb on + strand, within yihX at 913.518 kb on - strand, within yihX at 913.518 kb on - strand, within yihX at 913.518 kb on - strand, within yihX at 913.518 kb on - strand, within yihX at 913.518 kb on - strand, within yihX at 913.519 kb on + strand, within yihX at 913.519 kb on + strand, within yihX at 913.520 kb on - strand, within yihX at 913.520 kb on - strand, within yihX at 913.549 kb on + strand, within yihX
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 911,145 + +0.2 911,146 - -0.6 911,204 - +1.0 911,205 + -0.2 911,205 + -0.6 911,205 + -1.3 911,205 + +0.5 911,205 + +0.1 911,205 + -0.2 911,205 + -1.5 911,205 + -0.4 911,206 - -0.3 911,206 - -0.8 911,206 - +0.5 911,206 - +0.7 911,206 - +0.9 911,206 - +1.2 911,206 - -1.0 911,206 - -1.3 911,206 - +0.5 911,206 - +0.2 911,206 - +0.2 911,206 - +0.5 911,206 - -0.5 911,206 - +0.8 911,362 - fabY MCAODC_04495 0.23 -0.9 911,429 - fabY MCAODC_04495 0.30 -1.9 911,462 + fabY MCAODC_04495 0.34 -1.7 911,482 + fabY MCAODC_04495 0.36 +0.1 911,483 - fabY MCAODC_04495 0.36 -0.5 911,518 + fabY MCAODC_04495 0.40 -0.3 911,518 + fabY MCAODC_04495 0.40 -0.6 911,518 + fabY MCAODC_04495 0.40 -0.5 911,519 - fabY MCAODC_04495 0.40 -2.0 911,519 - fabY MCAODC_04495 0.40 -0.9 911,539 + fabY MCAODC_04495 0.42 -1.4 911,540 - fabY MCAODC_04495 0.42 +0.4 911,540 - fabY MCAODC_04495 0.42 -0.3 911,541 + fabY MCAODC_04495 0.42 -1.2 911,541 + fabY MCAODC_04495 0.42 -1.2 911,541 + fabY MCAODC_04495 0.42 -0.0 911,542 - fabY MCAODC_04495 0.42 -0.1 911,542 - fabY MCAODC_04495 0.42 +0.6 911,542 - fabY MCAODC_04495 0.42 +1.4 911,542 - fabY MCAODC_04495 0.42 -0.6 911,581 + fabY MCAODC_04495 0.46 -0.2 911,589 + fabY MCAODC_04495 0.47 +0.8 911,590 - fabY MCAODC_04495 0.47 -0.1 911,590 - fabY MCAODC_04495 0.47 -0.1 911,590 - fabY MCAODC_04495 0.47 -0.8 911,635 + fabY MCAODC_04495 0.52 -0.5 911,659 + fabY MCAODC_04495 0.55 +0.2 911,896 + fabY MCAODC_04495 0.80 -0.6 911,896 + fabY MCAODC_04495 0.80 -0.8 911,896 + fabY MCAODC_04495 0.80 +0.3 911,897 - fabY MCAODC_04495 0.80 +0.2 911,899 + fabY MCAODC_04495 0.80 +0.3 911,900 - fabY MCAODC_04495 0.80 -1.2 911,900 - fabY MCAODC_04495 0.80 -0.7 911,901 + fabY MCAODC_04495 0.80 +0.5 911,901 + fabY MCAODC_04495 0.80 -1.5 911,901 + fabY MCAODC_04495 0.80 -0.2 911,901 + fabY MCAODC_04495 0.80 -1.1 911,901 + fabY MCAODC_04495 0.80 +0.0 911,902 - fabY MCAODC_04495 0.80 -0.0 911,902 - fabY MCAODC_04495 0.80 -0.2 911,902 - fabY MCAODC_04495 0.80 -0.4 911,902 - fabY MCAODC_04495 0.80 +0.1 911,912 + fabY MCAODC_04495 0.82 -0.5 912,011 - +1.4 912,036 + +0.0 912,037 - +0.5 912,039 + +1.0 912,039 + -0.2 912,039 + -0.8 912,039 + +1.8 912,048 - -1.1 912,048 - -2.2 912,081 + -2.5 912,081 + -0.8 912,081 + -1.4 912,081 + -0.3 912,082 - +0.3 912,082 - +0.0 912,082 - -0.9 912,082 - +0.3 912,082 - +0.4 912,082 - -0.2 912,085 + -1.0 912,085 + +0.1 912,085 + -1.9 912,086 - +0.4 912,086 - +0.0 912,091 + -0.4 912,091 + +0.0 912,092 - +0.4 912,133 + +0.3 912,134 - -0.5 912,134 - -0.6 912,176 - dtd MCAODC_04500 0.11 +0.3 912,245 + dtd MCAODC_04500 0.26 +0.6 912,245 + dtd MCAODC_04500 0.26 +1.1 912,246 - dtd MCAODC_04500 0.26 +0.1 912,251 + dtd MCAODC_04500 0.28 -3.0 912,251 + dtd MCAODC_04500 0.28 +0.6 912,251 + dtd MCAODC_04500 0.28 -0.5 912,251 + dtd MCAODC_04500 0.28 +0.9 912,252 - dtd MCAODC_04500 0.28 +0.7 912,252 - dtd MCAODC_04500 0.28 +1.0 912,252 - dtd MCAODC_04500 0.28 -0.6 912,252 - dtd MCAODC_04500 0.28 +0.3 912,253 + dtd MCAODC_04500 0.28 +0.3 912,253 + dtd MCAODC_04500 0.28 +0.5 912,253 + dtd MCAODC_04500 0.28 +1.1 912,254 - dtd MCAODC_04500 0.28 +0.0 912,331 - dtd MCAODC_04500 0.46 +3.7 912,403 - dtd MCAODC_04500 0.62 +0.6 912,478 + dtd MCAODC_04500 0.79 -0.3 912,478 + dtd MCAODC_04500 0.79 +0.4 912,557 - +0.4 912,603 + +0.5 912,603 + +0.2 912,614 - +1.0 912,656 + yihY MCAODC_04505 0.11 +0.4 912,656 + yihY MCAODC_04505 0.11 -0.7 912,657 - yihY MCAODC_04505 0.11 -0.9 912,712 + yihY MCAODC_04505 0.17 -1.2 912,743 + yihY MCAODC_04505 0.21 -0.8 912,745 + yihY MCAODC_04505 0.21 -0.1 912,822 + yihY MCAODC_04505 0.30 -0.6 912,833 + yihY MCAODC_04505 0.31 +0.0 912,833 + yihY MCAODC_04505 0.31 +1.4 912,914 + yihY MCAODC_04505 0.40 +0.7 912,915 - yihY MCAODC_04505 0.40 -0.3 912,915 - yihY MCAODC_04505 0.40 +0.3 912,950 - yihY MCAODC_04505 0.44 +2.6 913,009 + yihY MCAODC_04505 0.51 +0.2 913,084 + yihY MCAODC_04505 0.60 -1.3 913,084 + yihY MCAODC_04505 0.60 -0.2 913,084 + yihY MCAODC_04505 0.60 -2.1 913,085 - yihY MCAODC_04505 0.60 +0.1 913,085 - yihY MCAODC_04505 0.60 -3.0 913,085 - yihY MCAODC_04505 0.60 -0.1 913,085 - yihY MCAODC_04505 0.60 +0.2 913,168 + yihY MCAODC_04505 0.69 -0.1 913,178 + yihY MCAODC_04505 0.70 +1.2 913,178 + yihY MCAODC_04505 0.70 -0.4 913,190 + yihY MCAODC_04505 0.72 -0.4 913,215 - yihY MCAODC_04505 0.75 -0.4 913,224 + yihY MCAODC_04505 0.76 +0.6 913,225 - yihY MCAODC_04505 0.76 -0.3 913,297 - yihY MCAODC_04505 0.84 +0.7 913,315 + yihY MCAODC_04505 0.86 +0.4 913,315 + yihY MCAODC_04505 0.86 +0.1 913,315 + yihY MCAODC_04505 0.86 +0.5 913,316 - yihY MCAODC_04505 0.86 -0.9 913,343 + yihY MCAODC_04505 0.89 +0.8 913,343 + yihY MCAODC_04505 0.89 +0.9 913,343 + yihY MCAODC_04505 0.89 +0.3 913,343 + yihY MCAODC_04505 0.89 +0.0 913,343 + yihY MCAODC_04505 0.89 +0.6 913,343 + yihY MCAODC_04505 0.89 -0.5 913,344 - yihY MCAODC_04505 0.89 +0.3 913,344 - yihY MCAODC_04505 0.89 -0.7 913,344 - yihY MCAODC_04505 0.89 +0.6 913,344 - yihY MCAODC_04505 0.89 +0.5 913,371 + +0.4 913,371 + -0.2 913,372 - -0.7 913,389 + +0.5 913,436 + +0.1 913,471 + +1.0 913,471 + +0.0 913,471 + +0.2 913,471 + +0.2 913,472 - -0.5 913,492 + yihX MCAODC_04510 0.10 -1.0 913,492 + yihX MCAODC_04510 0.10 +0.1 913,507 + yihX MCAODC_04510 0.13 +0.5 913,507 + yihX MCAODC_04510 0.13 +0.6 913,508 - yihX MCAODC_04510 0.13 +0.7 913,508 - yihX MCAODC_04510 0.13 +0.2 913,508 - yihX MCAODC_04510 0.13 -0.3 913,517 + yihX MCAODC_04510 0.14 +0.2 913,517 + yihX MCAODC_04510 0.14 +0.2 913,517 + yihX MCAODC_04510 0.14 +0.6 913,517 + yihX MCAODC_04510 0.14 +0.6 913,517 + yihX MCAODC_04510 0.14 +0.4 913,517 + yihX MCAODC_04510 0.14 -0.5 913,518 - yihX MCAODC_04510 0.15 +0.0 913,518 - yihX MCAODC_04510 0.15 +0.8 913,518 - yihX MCAODC_04510 0.15 +1.3 913,518 - yihX MCAODC_04510 0.15 -0.4 913,518 - yihX MCAODC_04510 0.15 +0.8 913,519 + yihX MCAODC_04510 0.15 -1.5 913,519 + yihX MCAODC_04510 0.15 -1.1 913,520 - yihX MCAODC_04510 0.15 +0.2 913,520 - yihX MCAODC_04510 0.15 -1.2 913,549 + yihX MCAODC_04510 0.20 +0.2
Or see this region's nucleotide sequence