Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frvX and frvR overlap by 1 nucleotides frvR and yiiG are separated by 49 nucleotides
MCAODC_04435: frvX - aminopeptidase, at 896,591 to 897,661
frvX
MCAODC_04440: frvR - putative frv operon regulatory protein, at 897,661 to 899,409
frvR
MCAODC_04445: yiiG - Uncharacterized protein YiiG, at 899,459 to 900,514
yiiG
Position (kb) 897
898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.743 kb on + strand, within frvX at 896.743 kb on + strand, within frvX at 896.744 kb on - strand, within frvX at 896.773 kb on + strand, within frvX at 896.774 kb on - strand, within frvX at 896.774 kb on - strand, within frvX at 896.831 kb on - strand, within frvX at 896.883 kb on + strand, within frvX at 896.883 kb on + strand, within frvX at 896.884 kb on - strand, within frvX at 897.052 kb on + strand, within frvX at 897.116 kb on - strand, within frvX at 897.147 kb on + strand, within frvX at 897.150 kb on + strand, within frvX at 897.150 kb on + strand, within frvX at 897.150 kb on + strand, within frvX at 897.151 kb on - strand, within frvX at 897.151 kb on - strand, within frvX at 897.151 kb on - strand, within frvX at 897.159 kb on + strand, within frvX at 897.159 kb on + strand, within frvX at 897.159 kb on + strand, within frvX at 897.159 kb on + strand, within frvX at 897.160 kb on - strand, within frvX at 897.160 kb on - strand, within frvX at 897.160 kb on - strand, within frvX at 897.163 kb on + strand, within frvX at 897.163 kb on + strand, within frvX at 897.164 kb on - strand, within frvX at 897.175 kb on + strand, within frvX at 897.175 kb on + strand, within frvX at 897.307 kb on + strand, within frvX at 897.307 kb on + strand, within frvX at 897.307 kb on + strand, within frvX at 897.307 kb on + strand, within frvX at 897.313 kb on + strand, within frvX at 897.313 kb on + strand, within frvX at 897.313 kb on + strand, within frvX at 897.314 kb on - strand, within frvX at 897.314 kb on - strand, within frvX at 897.314 kb on - strand, within frvX at 897.372 kb on + strand, within frvX at 897.418 kb on + strand, within frvX at 897.419 kb on - strand, within frvX at 897.419 kb on - strand, within frvX at 897.419 kb on - strand, within frvX at 897.427 kb on - strand, within frvX at 897.477 kb on - strand, within frvX at 897.477 kb on - strand, within frvX at 897.483 kb on + strand, within frvX at 897.484 kb on - strand, within frvX at 897.550 kb on + strand, within frvX at 897.569 kb on + strand at 897.612 kb on + strand at 897.612 kb on + strand at 897.613 kb on - strand at 897.659 kb on + strand at 897.660 kb on - strand at 897.660 kb on - strand at 897.681 kb on - strand at 897.681 kb on - strand at 897.778 kb on + strand at 897.779 kb on - strand at 897.789 kb on + strand at 897.789 kb on + strand at 897.810 kb on + strand at 897.811 kb on - strand at 897.918 kb on - strand, within frvR at 897.918 kb on - strand, within frvR at 897.918 kb on - strand, within frvR at 897.918 kb on - strand, within frvR at 897.928 kb on - strand, within frvR at 897.928 kb on - strand, within frvR at 897.934 kb on - strand, within frvR at 897.963 kb on + strand, within frvR at 897.963 kb on + strand, within frvR at 897.964 kb on - strand, within frvR at 897.964 kb on - strand, within frvR at 897.964 kb on - strand, within frvR at 898.131 kb on - strand, within frvR at 898.146 kb on - strand, within frvR at 898.169 kb on + strand, within frvR at 898.169 kb on + strand, within frvR at 898.169 kb on + strand, within frvR at 898.170 kb on - strand, within frvR at 898.170 kb on - strand, within frvR at 898.220 kb on - strand, within frvR at 898.220 kb on - strand, within frvR at 898.246 kb on + strand, within frvR at 898.247 kb on - strand, within frvR at 898.247 kb on - strand, within frvR at 898.258 kb on - strand, within frvR at 898.302 kb on - strand, within frvR at 898.302 kb on - strand, within frvR at 898.320 kb on + strand, within frvR at 898.321 kb on - strand, within frvR at 898.321 kb on - strand, within frvR at 898.321 kb on - strand, within frvR at 898.321 kb on - strand, within frvR at 898.350 kb on - strand, within frvR at 898.398 kb on - strand, within frvR at 898.398 kb on - strand, within frvR at 898.458 kb on + strand, within frvR at 898.459 kb on - strand, within frvR at 898.459 kb on - strand, within frvR at 898.462 kb on - strand, within frvR at 898.468 kb on - strand, within frvR at 898.500 kb on - strand, within frvR at 898.500 kb on - strand, within frvR at 898.502 kb on + strand, within frvR at 898.502 kb on + strand, within frvR at 898.502 kb on + strand, within frvR at 898.608 kb on + strand, within frvR at 898.666 kb on + strand, within frvR at 898.667 kb on - strand, within frvR at 898.750 kb on - strand, within frvR at 898.750 kb on - strand, within frvR at 898.750 kb on - strand, within frvR at 898.795 kb on - strand, within frvR at 898.870 kb on + strand, within frvR at 898.894 kb on - strand, within frvR at 898.897 kb on + strand, within frvR at 898.943 kb on + strand, within frvR at 899.028 kb on - strand, within frvR at 899.028 kb on - strand, within frvR at 899.049 kb on + strand, within frvR at 899.049 kb on + strand, within frvR at 899.050 kb on - strand, within frvR at 899.050 kb on - strand, within frvR at 899.052 kb on + strand, within frvR at 899.092 kb on - strand, within frvR at 899.095 kb on - strand, within frvR at 899.155 kb on - strand, within frvR at 899.245 kb on - strand at 899.245 kb on - strand at 899.313 kb on + strand at 899.330 kb on + strand at 899.330 kb on + strand at 899.330 kb on + strand at 899.330 kb on + strand at 899.331 kb on - strand at 899.331 kb on - strand at 899.331 kb on - strand at 899.331 kb on - strand at 899.375 kb on - strand at 899.375 kb on - strand at 899.375 kb on - strand at 899.385 kb on + strand at 899.385 kb on + strand at 899.394 kb on - strand at 899.471 kb on - strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.473 kb on + strand at 899.474 kb on - strand at 899.474 kb on - strand at 899.475 kb on + strand at 899.476 kb on - strand at 899.476 kb on - strand at 899.476 kb on - strand at 899.590 kb on + strand, within yiiG at 899.610 kb on + strand, within yiiG at 899.896 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.022 kb on + strand, within yiiG at 900.051 kb on + strand, within yiiG at 900.052 kb on - strand, within yiiG at 900.153 kb on + strand, within yiiG at 900.154 kb on - strand, within yiiG at 900.154 kb on - strand, within yiiG at 900.220 kb on - strand, within yiiG at 900.251 kb on + strand, within yiiG at 900.252 kb on - strand, within yiiG at 900.252 kb on - strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.274 kb on - strand, within yiiG at 900.274 kb on - strand, within yiiG at 900.341 kb on - strand, within yiiG at 900.371 kb on - strand, within yiiG at 900.371 kb on - strand, within yiiG
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 896,743 + frvX MCAODC_04435 0.14 -0.3 896,743 + frvX MCAODC_04435 0.14 -0.3 896,744 - frvX MCAODC_04435 0.14 -2.2 896,773 + frvX MCAODC_04435 0.17 +0.1 896,774 - frvX MCAODC_04435 0.17 +0.0 896,774 - frvX MCAODC_04435 0.17 +0.7 896,831 - frvX MCAODC_04435 0.22 +0.5 896,883 + frvX MCAODC_04435 0.27 +1.0 896,883 + frvX MCAODC_04435 0.27 +1.5 896,884 - frvX MCAODC_04435 0.27 +0.4 897,052 + frvX MCAODC_04435 0.43 -1.6 897,116 - frvX MCAODC_04435 0.49 +0.3 897,147 + frvX MCAODC_04435 0.52 +1.3 897,150 + frvX MCAODC_04435 0.52 +0.6 897,150 + frvX MCAODC_04435 0.52 -0.2 897,150 + frvX MCAODC_04435 0.52 -0.5 897,151 - frvX MCAODC_04435 0.52 -0.8 897,151 - frvX MCAODC_04435 0.52 +0.0 897,151 - frvX MCAODC_04435 0.52 +1.4 897,159 + frvX MCAODC_04435 0.53 +0.6 897,159 + frvX MCAODC_04435 0.53 +0.3 897,159 + frvX MCAODC_04435 0.53 -0.8 897,159 + frvX MCAODC_04435 0.53 -0.6 897,160 - frvX MCAODC_04435 0.53 +0.1 897,160 - frvX MCAODC_04435 0.53 -0.7 897,160 - frvX MCAODC_04435 0.53 -0.3 897,163 + frvX MCAODC_04435 0.53 -0.8 897,163 + frvX MCAODC_04435 0.53 +1.0 897,164 - frvX MCAODC_04435 0.54 +0.2 897,175 + frvX MCAODC_04435 0.55 +0.4 897,175 + frvX MCAODC_04435 0.55 +0.3 897,307 + frvX MCAODC_04435 0.67 -0.3 897,307 + frvX MCAODC_04435 0.67 -0.0 897,307 + frvX MCAODC_04435 0.67 +0.4 897,307 + frvX MCAODC_04435 0.67 +0.8 897,313 + frvX MCAODC_04435 0.67 -1.1 897,313 + frvX MCAODC_04435 0.67 -0.2 897,313 + frvX MCAODC_04435 0.67 -1.2 897,314 - frvX MCAODC_04435 0.68 +0.7 897,314 - frvX MCAODC_04435 0.68 -0.4 897,314 - frvX MCAODC_04435 0.68 +0.3 897,372 + frvX MCAODC_04435 0.73 -1.3 897,418 + frvX MCAODC_04435 0.77 +0.6 897,419 - frvX MCAODC_04435 0.77 +0.4 897,419 - frvX MCAODC_04435 0.77 -0.1 897,419 - frvX MCAODC_04435 0.77 +0.6 897,427 - frvX MCAODC_04435 0.78 -0.3 897,477 - frvX MCAODC_04435 0.83 +0.5 897,477 - frvX MCAODC_04435 0.83 -1.3 897,483 + frvX MCAODC_04435 0.83 +0.3 897,484 - frvX MCAODC_04435 0.83 -2.5 897,550 + frvX MCAODC_04435 0.90 -0.5 897,569 + -1.2 897,612 + +0.7 897,612 + +0.8 897,613 - -0.1 897,659 + +0.7 897,660 - -0.7 897,660 - -0.8 897,681 - +0.4 897,681 - +0.6 897,778 + +0.6 897,779 - +1.0 897,789 + -0.1 897,789 + +0.7 897,810 + +0.1 897,811 - -1.3 897,918 - frvR MCAODC_04440 0.15 +1.5 897,918 - frvR MCAODC_04440 0.15 +0.4 897,918 - frvR MCAODC_04440 0.15 -0.6 897,918 - frvR MCAODC_04440 0.15 -0.1 897,928 - frvR MCAODC_04440 0.15 +0.5 897,928 - frvR MCAODC_04440 0.15 -0.1 897,934 - frvR MCAODC_04440 0.16 +0.5 897,963 + frvR MCAODC_04440 0.17 +0.5 897,963 + frvR MCAODC_04440 0.17 +0.6 897,964 - frvR MCAODC_04440 0.17 +1.0 897,964 - frvR MCAODC_04440 0.17 +0.9 897,964 - frvR MCAODC_04440 0.17 +1.7 898,131 - frvR MCAODC_04440 0.27 -0.8 898,146 - frvR MCAODC_04440 0.28 +0.8 898,169 + frvR MCAODC_04440 0.29 -1.1 898,169 + frvR MCAODC_04440 0.29 +0.4 898,169 + frvR MCAODC_04440 0.29 +0.6 898,170 - frvR MCAODC_04440 0.29 -0.1 898,170 - frvR MCAODC_04440 0.29 +0.0 898,220 - frvR MCAODC_04440 0.32 +1.2 898,220 - frvR MCAODC_04440 0.32 -0.2 898,246 + frvR MCAODC_04440 0.33 -0.2 898,247 - frvR MCAODC_04440 0.34 -0.3 898,247 - frvR MCAODC_04440 0.34 +0.7 898,258 - frvR MCAODC_04440 0.34 +0.1 898,302 - frvR MCAODC_04440 0.37 -0.3 898,302 - frvR MCAODC_04440 0.37 +0.2 898,320 + frvR MCAODC_04440 0.38 -0.4 898,321 - frvR MCAODC_04440 0.38 +0.6 898,321 - frvR MCAODC_04440 0.38 -0.5 898,321 - frvR MCAODC_04440 0.38 +0.2 898,321 - frvR MCAODC_04440 0.38 +0.4 898,350 - frvR MCAODC_04440 0.39 +0.8 898,398 - frvR MCAODC_04440 0.42 -1.6 898,398 - frvR MCAODC_04440 0.42 -0.4 898,458 + frvR MCAODC_04440 0.46 -0.4 898,459 - frvR MCAODC_04440 0.46 +0.8 898,459 - frvR MCAODC_04440 0.46 +0.7 898,462 - frvR MCAODC_04440 0.46 -0.2 898,468 - frvR MCAODC_04440 0.46 -0.2 898,500 - frvR MCAODC_04440 0.48 +0.7 898,500 - frvR MCAODC_04440 0.48 -0.5 898,502 + frvR MCAODC_04440 0.48 +1.2 898,502 + frvR MCAODC_04440 0.48 +1.1 898,502 + frvR MCAODC_04440 0.48 +1.7 898,608 + frvR MCAODC_04440 0.54 +0.1 898,666 + frvR MCAODC_04440 0.57 +2.2 898,667 - frvR MCAODC_04440 0.58 -0.7 898,750 - frvR MCAODC_04440 0.62 +0.5 898,750 - frvR MCAODC_04440 0.62 -0.3 898,750 - frvR MCAODC_04440 0.62 +0.0 898,795 - frvR MCAODC_04440 0.65 +1.7 898,870 + frvR MCAODC_04440 0.69 +1.1 898,894 - frvR MCAODC_04440 0.70 -0.8 898,897 + frvR MCAODC_04440 0.71 -1.0 898,943 + frvR MCAODC_04440 0.73 -0.6 899,028 - frvR MCAODC_04440 0.78 -0.6 899,028 - frvR MCAODC_04440 0.78 -0.1 899,049 + frvR MCAODC_04440 0.79 -0.1 899,049 + frvR MCAODC_04440 0.79 +1.4 899,050 - frvR MCAODC_04440 0.79 -0.9 899,050 - frvR MCAODC_04440 0.79 +0.1 899,052 + frvR MCAODC_04440 0.80 +0.4 899,092 - frvR MCAODC_04440 0.82 +0.9 899,095 - frvR MCAODC_04440 0.82 +2.0 899,155 - frvR MCAODC_04440 0.85 -0.5 899,245 - -0.1 899,245 - -1.7 899,313 + +0.3 899,330 + +0.3 899,330 + -1.4 899,330 + -1.1 899,330 + +0.8 899,331 - +0.7 899,331 - -0.6 899,331 - +0.6 899,331 - -0.3 899,375 - +0.7 899,375 - +0.0 899,375 - -0.7 899,385 + -1.3 899,385 + +0.5 899,394 - -1.6 899,471 - -0.0 899,473 + -0.1 899,473 + +0.2 899,473 + -1.7 899,473 + -0.8 899,473 + -2.3 899,473 + +0.5 899,473 + -1.5 899,473 + +0.8 899,473 + -0.2 899,473 + -0.5 899,474 - +0.0 899,474 - +0.6 899,475 + -0.2 899,476 - +0.4 899,476 - +0.2 899,476 - +0.5 899,590 + yiiG MCAODC_04445 0.12 -0.5 899,610 + yiiG MCAODC_04445 0.14 +0.3 899,896 - yiiG MCAODC_04445 0.41 +1.0 900,001 - yiiG MCAODC_04445 0.51 +0.1 900,001 - yiiG MCAODC_04445 0.51 +1.3 900,001 - yiiG MCAODC_04445 0.51 +1.0 900,022 + yiiG MCAODC_04445 0.53 +1.2 900,051 + yiiG MCAODC_04445 0.56 -1.1 900,052 - yiiG MCAODC_04445 0.56 +0.2 900,153 + yiiG MCAODC_04445 0.66 -0.7 900,154 - yiiG MCAODC_04445 0.66 -0.7 900,154 - yiiG MCAODC_04445 0.66 +0.3 900,220 - yiiG MCAODC_04445 0.72 -0.5 900,251 + yiiG MCAODC_04445 0.75 +0.3 900,252 - yiiG MCAODC_04445 0.75 +0.5 900,252 - yiiG MCAODC_04445 0.75 +1.4 900,261 + yiiG MCAODC_04445 0.76 +0.1 900,261 + yiiG MCAODC_04445 0.76 -0.6 900,261 + yiiG MCAODC_04445 0.76 +0.1 900,262 - yiiG MCAODC_04445 0.76 -0.1 900,262 - yiiG MCAODC_04445 0.76 -0.3 900,262 - yiiG MCAODC_04445 0.76 +0.4 900,273 + yiiG MCAODC_04445 0.77 -0.2 900,273 + yiiG MCAODC_04445 0.77 -0.7 900,273 + yiiG MCAODC_04445 0.77 -1.5 900,273 + yiiG MCAODC_04445 0.77 -0.4 900,274 - yiiG MCAODC_04445 0.77 -1.2 900,274 - yiiG MCAODC_04445 0.77 -0.6 900,341 - yiiG MCAODC_04445 0.84 +0.4 900,371 - yiiG MCAODC_04445 0.86 -1.6 900,371 - yiiG MCAODC_04445 0.86 +1.5
Or see this region's nucleotide sequence