Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhaA and rhaD are separated by 174 nucleotides rhaD and rhaM are separated by 9 nucleotides rhaM and MCAODC_04420 are separated by 40 nucleotides
MCAODC_04400: rhaA - L-rhamnose isomerase, at 890,210 to 891,469
rhaA
MCAODC_04410: rhaD - rhamnulose-1-phosphate aldolase, at 891,644 to 892,468
rhaD
MCAODC_04415: rhaM - L-rhamnose mutarotase, at 892,478 to 892,792
rhaM
MCAODC_04420: MCAODC_04420 - porin, at 892,833 to 894,227
_04420
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 890.645 kb on - strand, within rhaA at 890.786 kb on - strand, within rhaA at 890.872 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.919 kb on - strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.943 kb on - strand, within rhaA at 890.951 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.203 kb on - strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.232 kb on + strand, within rhaA at 891.233 kb on - strand, within rhaA at 891.277 kb on + strand, within rhaA at 891.380 kb on + strand at 891.380 kb on + strand at 891.381 kb on - strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.437 kb on + strand at 891.506 kb on + strand at 891.519 kb on + strand at 891.519 kb on + strand at 891.519 kb on + strand at 891.520 kb on - strand at 891.520 kb on - strand at 891.526 kb on - strand at 891.807 kb on - strand, within rhaD at 891.809 kb on - strand, within rhaD at 891.853 kb on + strand, within rhaD at 891.853 kb on + strand, within rhaD at 891.907 kb on + strand, within rhaD at 891.908 kb on - strand, within rhaD at 891.908 kb on - strand, within rhaD at 891.912 kb on + strand, within rhaD at 891.912 kb on + strand, within rhaD at 891.913 kb on - strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.952 kb on + strand, within rhaD at 891.953 kb on - strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.097 kb on + strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.098 kb on - strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.101 kb on + strand, within rhaD at 892.102 kb on - strand, within rhaD at 892.102 kb on - strand, within rhaD at 892.167 kb on + strand, within rhaD at 892.168 kb on - strand, within rhaD at 892.356 kb on + strand, within rhaD at 892.368 kb on - strand, within rhaD at 892.368 kb on - strand, within rhaD at 892.393 kb on + strand at 892.393 kb on + strand at 892.394 kb on - strand at 892.466 kb on + strand at 892.467 kb on - strand at 892.467 kb on - strand at 892.506 kb on + strand at 892.507 kb on - strand at 892.529 kb on + strand, within rhaM at 892.529 kb on + strand, within rhaM at 892.529 kb on + strand, within rhaM at 892.530 kb on - strand, within rhaM at 892.530 kb on - strand, within rhaM at 892.530 kb on - strand, within rhaM at 892.530 kb on - strand, within rhaM at 892.543 kb on + strand, within rhaM at 892.594 kb on + strand, within rhaM at 892.595 kb on - strand, within rhaM at 892.598 kb on + strand, within rhaM at 892.598 kb on + strand, within rhaM at 892.598 kb on + strand, within rhaM at 892.598 kb on + strand, within rhaM at 892.599 kb on - strand, within rhaM at 892.607 kb on + strand, within rhaM at 892.608 kb on - strand, within rhaM at 892.625 kb on - strand, within rhaM at 892.712 kb on + strand, within rhaM at 892.712 kb on + strand, within rhaM at 892.713 kb on - strand, within rhaM at 892.713 kb on - strand, within rhaM at 892.713 kb on - strand, within rhaM at 892.715 kb on - strand, within rhaM at 892.726 kb on + strand, within rhaM at 892.790 kb on + strand at 892.813 kb on + strand at 892.814 kb on - strand at 892.844 kb on - strand at 892.925 kb on - strand at 892.925 kb on - strand at 892.927 kb on + strand at 892.927 kb on + strand at 892.928 kb on - strand at 892.928 kb on - strand at 892.943 kb on + strand at 893.008 kb on + strand, within MCAODC_04420 at 893.008 kb on + strand, within MCAODC_04420 at 893.008 kb on + strand, within MCAODC_04420 at 893.009 kb on - strand, within MCAODC_04420 at 893.009 kb on - strand, within MCAODC_04420 at 893.050 kb on - strand, within MCAODC_04420 at 893.084 kb on - strand, within MCAODC_04420 at 893.084 kb on - strand, within MCAODC_04420 at 893.087 kb on + strand, within MCAODC_04420 at 893.087 kb on + strand, within MCAODC_04420 at 893.089 kb on + strand, within MCAODC_04420 at 893.089 kb on + strand, within MCAODC_04420 at 893.089 kb on + strand, within MCAODC_04420 at 893.090 kb on - strand, within MCAODC_04420 at 893.150 kb on + strand, within MCAODC_04420 at 893.151 kb on - strand, within MCAODC_04420 at 893.172 kb on + strand, within MCAODC_04420 at 893.285 kb on - strand, within MCAODC_04420 at 893.291 kb on - strand, within MCAODC_04420 at 893.298 kb on - strand, within MCAODC_04420 at 893.375 kb on - strand, within MCAODC_04420 at 893.427 kb on - strand, within MCAODC_04420
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 890,645 - rhaA MCAODC_04400 0.35 -2.6 890,786 - rhaA MCAODC_04400 0.46 -0.2 890,872 + rhaA MCAODC_04400 0.53 +1.2 890,918 + rhaA MCAODC_04400 0.56 -0.3 890,918 + rhaA MCAODC_04400 0.56 -0.1 890,918 + rhaA MCAODC_04400 0.56 +0.7 890,919 - rhaA MCAODC_04400 0.56 +1.4 890,942 + rhaA MCAODC_04400 0.58 +0.6 890,942 + rhaA MCAODC_04400 0.58 -0.0 890,943 - rhaA MCAODC_04400 0.58 +1.3 890,951 + rhaA MCAODC_04400 0.59 +0.9 891,044 + rhaA MCAODC_04400 0.66 +0.6 891,044 + rhaA MCAODC_04400 0.66 -0.1 891,044 + rhaA MCAODC_04400 0.66 -0.2 891,044 + rhaA MCAODC_04400 0.66 +1.1 891,044 + rhaA MCAODC_04400 0.66 -0.1 891,045 - rhaA MCAODC_04400 0.66 +0.0 891,045 - rhaA MCAODC_04400 0.66 +0.4 891,102 + rhaA MCAODC_04400 0.71 -0.8 891,102 + rhaA MCAODC_04400 0.71 -0.1 891,102 + rhaA MCAODC_04400 0.71 -1.6 891,102 + rhaA MCAODC_04400 0.71 -0.4 891,103 - rhaA MCAODC_04400 0.71 +0.2 891,103 - rhaA MCAODC_04400 0.71 -0.7 891,202 + rhaA MCAODC_04400 0.79 +1.5 891,202 + rhaA MCAODC_04400 0.79 -2.7 891,202 + rhaA MCAODC_04400 0.79 -0.2 891,203 - rhaA MCAODC_04400 0.79 +0.8 891,211 + rhaA MCAODC_04400 0.79 -0.2 891,211 + rhaA MCAODC_04400 0.79 +0.1 891,212 - rhaA MCAODC_04400 0.80 -1.6 891,212 - rhaA MCAODC_04400 0.80 -0.1 891,212 - rhaA MCAODC_04400 0.80 +0.5 891,232 + rhaA MCAODC_04400 0.81 +0.5 891,233 - rhaA MCAODC_04400 0.81 +1.7 891,277 + rhaA MCAODC_04400 0.85 +0.6 891,380 + +0.3 891,380 + +0.8 891,381 - -0.4 891,437 + +1.3 891,437 + +0.2 891,437 + -0.3 891,437 + +1.0 891,437 + -0.1 891,437 + -1.7 891,437 + -0.8 891,437 + +0.8 891,437 + -0.9 891,506 + -0.2 891,519 + -0.1 891,519 + -0.3 891,519 + +0.6 891,520 - -1.0 891,520 - +0.3 891,526 - +0.8 891,807 - rhaD MCAODC_04410 0.20 -0.0 891,809 - rhaD MCAODC_04410 0.20 +0.8 891,853 + rhaD MCAODC_04410 0.25 +0.9 891,853 + rhaD MCAODC_04410 0.25 +0.1 891,907 + rhaD MCAODC_04410 0.32 -0.4 891,908 - rhaD MCAODC_04410 0.32 +0.0 891,908 - rhaD MCAODC_04410 0.32 +0.7 891,912 + rhaD MCAODC_04410 0.32 +2.4 891,912 + rhaD MCAODC_04410 0.32 +0.6 891,913 - rhaD MCAODC_04410 0.33 -1.5 891,952 + rhaD MCAODC_04410 0.37 -0.1 891,952 + rhaD MCAODC_04410 0.37 +0.5 891,952 + rhaD MCAODC_04410 0.37 -0.5 891,952 + rhaD MCAODC_04410 0.37 -0.1 891,953 - rhaD MCAODC_04410 0.37 +0.6 892,097 + rhaD MCAODC_04410 0.55 +0.1 892,097 + rhaD MCAODC_04410 0.55 -0.4 892,097 + rhaD MCAODC_04410 0.55 -0.1 892,097 + rhaD MCAODC_04410 0.55 +0.2 892,097 + rhaD MCAODC_04410 0.55 +0.2 892,097 + rhaD MCAODC_04410 0.55 +0.3 892,097 + rhaD MCAODC_04410 0.55 +0.7 892,097 + rhaD MCAODC_04410 0.55 -0.9 892,097 + rhaD MCAODC_04410 0.55 +0.2 892,097 + rhaD MCAODC_04410 0.55 -2.1 892,097 + rhaD MCAODC_04410 0.55 -1.6 892,098 - rhaD MCAODC_04410 0.55 -1.0 892,098 - rhaD MCAODC_04410 0.55 +0.3 892,098 - rhaD MCAODC_04410 0.55 +0.8 892,098 - rhaD MCAODC_04410 0.55 +0.1 892,098 - rhaD MCAODC_04410 0.55 -0.4 892,098 - rhaD MCAODC_04410 0.55 +1.2 892,098 - rhaD MCAODC_04410 0.55 -0.3 892,098 - rhaD MCAODC_04410 0.55 +0.5 892,098 - rhaD MCAODC_04410 0.55 +1.2 892,098 - rhaD MCAODC_04410 0.55 +0.3 892,098 - rhaD MCAODC_04410 0.55 +1.2 892,098 - rhaD MCAODC_04410 0.55 -0.2 892,098 - rhaD MCAODC_04410 0.55 -0.4 892,101 + rhaD MCAODC_04410 0.55 +0.1 892,101 + rhaD MCAODC_04410 0.55 +0.0 892,101 + rhaD MCAODC_04410 0.55 +1.9 892,102 - rhaD MCAODC_04410 0.56 +0.3 892,102 - rhaD MCAODC_04410 0.56 +0.4 892,167 + rhaD MCAODC_04410 0.63 +0.8 892,168 - rhaD MCAODC_04410 0.64 +1.7 892,356 + rhaD MCAODC_04410 0.86 -1.0 892,368 - rhaD MCAODC_04410 0.88 -0.0 892,368 - rhaD MCAODC_04410 0.88 -0.6 892,393 + -0.3 892,393 + +0.2 892,394 - +0.5 892,466 + -0.5 892,467 - -0.6 892,467 - +1.7 892,506 + -2.7 892,507 - +0.2 892,529 + rhaM MCAODC_04415 0.16 -0.2 892,529 + rhaM MCAODC_04415 0.16 -0.8 892,529 + rhaM MCAODC_04415 0.16 +1.0 892,530 - rhaM MCAODC_04415 0.17 -0.6 892,530 - rhaM MCAODC_04415 0.17 -0.1 892,530 - rhaM MCAODC_04415 0.17 -1.8 892,530 - rhaM MCAODC_04415 0.17 +0.3 892,543 + rhaM MCAODC_04415 0.21 +0.4 892,594 + rhaM MCAODC_04415 0.37 +0.4 892,595 - rhaM MCAODC_04415 0.37 -0.4 892,598 + rhaM MCAODC_04415 0.38 -1.2 892,598 + rhaM MCAODC_04415 0.38 +0.3 892,598 + rhaM MCAODC_04415 0.38 -0.3 892,598 + rhaM MCAODC_04415 0.38 +0.5 892,599 - rhaM MCAODC_04415 0.38 -0.8 892,607 + rhaM MCAODC_04415 0.41 -0.4 892,608 - rhaM MCAODC_04415 0.41 +0.7 892,625 - rhaM MCAODC_04415 0.47 -0.9 892,712 + rhaM MCAODC_04415 0.74 -0.2 892,712 + rhaM MCAODC_04415 0.74 -1.2 892,713 - rhaM MCAODC_04415 0.75 -2.4 892,713 - rhaM MCAODC_04415 0.75 -0.1 892,713 - rhaM MCAODC_04415 0.75 -0.1 892,715 - rhaM MCAODC_04415 0.75 +0.0 892,726 + rhaM MCAODC_04415 0.79 -0.1 892,790 + -1.2 892,813 + -0.7 892,814 - +0.8 892,844 - -0.5 892,925 - -0.1 892,925 - +0.2 892,927 + +0.5 892,927 + -0.4 892,928 - +0.0 892,928 - +1.2 892,943 + -0.2 893,008 + MCAODC_04420 0.13 -0.3 893,008 + MCAODC_04420 0.13 -0.2 893,008 + MCAODC_04420 0.13 -0.4 893,009 - MCAODC_04420 0.13 +0.9 893,009 - MCAODC_04420 0.13 +0.1 893,050 - MCAODC_04420 0.16 +0.7 893,084 - MCAODC_04420 0.18 +0.0 893,084 - MCAODC_04420 0.18 -0.1 893,087 + MCAODC_04420 0.18 +0.9 893,087 + MCAODC_04420 0.18 +2.5 893,089 + MCAODC_04420 0.18 +1.2 893,089 + MCAODC_04420 0.18 -0.4 893,089 + MCAODC_04420 0.18 -0.6 893,090 - MCAODC_04420 0.18 -0.3 893,150 + MCAODC_04420 0.23 +0.9 893,151 - MCAODC_04420 0.23 -0.0 893,172 + MCAODC_04420 0.24 +0.8 893,285 - MCAODC_04420 0.32 -1.0 893,291 - MCAODC_04420 0.33 +0.4 893,298 - MCAODC_04420 0.33 -2.7 893,375 - MCAODC_04420 0.39 +3.4 893,427 - MCAODC_04420 0.43 +0.8
Or see this region's nucleotide sequence