Strain Fitness in Escherichia coli ECRC101 around MCAODC_04215

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and rpmE are separated by 159 nucleotidesrpmE and priA are separated by 202 nucleotides MCAODC_04210: rhsA - RHS element protein, at 853,091 to 857,275 rhsA MCAODC_04215: rpmE - 50S ribosomal protein L31, at 857,435 to 857,647 rpmE MCAODC_04220: priA - primosomal protein N', at 857,850 to 860,048 priA Position (kb) 857 858Strain fitness (log2 ratio) -2 -1 0 1at 857.294 kb on + strandat 857.295 kb on - strandat 857.298 kb on + strandat 857.313 kb on + strandat 857.314 kb on - strandat 857.340 kb on - strandat 857.347 kb on + strandat 857.348 kb on - strandat 857.348 kb on - strandat 857.373 kb on - strandat 857.373 kb on - strandat 857.375 kb on - strandat 857.386 kb on + strandat 857.387 kb on - strandat 857.814 kb on - strandat 857.814 kb on - strandat 857.814 kb on - strandat 857.814 kb on - strandat 857.815 kb on + strandat 857.816 kb on - strandat 857.818 kb on + strandat 857.818 kb on + strandat 857.818 kb on + strandat 857.818 kb on + strandat 857.818 kb on + strandat 857.819 kb on - strandat 857.819 kb on - strandat 857.819 kb on - strandat 857.849 kb on + strandat 857.849 kb on + strandat 857.849 kb on + strandat 857.849 kb on + strandat 857.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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857,294 + -0.2
857,295 - +0.3
857,298 + +0.8
857,313 + -0.6
857,314 - +0.1
857,340 - +1.2
857,347 + -0.5
857,348 - +0.3
857,348 - -0.9
857,373 - +1.1
857,373 - +0.6
857,375 - +1.4
857,386 + -0.5
857,387 - -0.4
857,814 - +0.7
857,814 - -1.0
857,814 - -0.1
857,814 - -0.4
857,815 + -0.0
857,816 - -1.9
857,818 + -0.1
857,818 + -0.7
857,818 + -2.6
857,818 + +0.2
857,818 + -0.2
857,819 - -1.0
857,819 - +0.5
857,819 - -1.0
857,849 + -1.8
857,849 + -0.8
857,849 + -1.7
857,849 + +0.6
857,849 + +0.3

Or see this region's nucleotide sequence