Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sorE and pepE are separated by 382 nucleotides pepE and yjbB are separated by 90 nucleotides
MCAODC_03725: sorE - L-sorbose 1-phosphate reductase, at 745,997 to 747,226
sorE
MCAODC_03730: pepE - dipeptidase PepE, at 747,609 to 748,298
pepE
MCAODC_03735: yjbB - Uncharacterized protein YjbB, at 748,389 to 750,020
yjbB
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 746.638 kb on + strand, within sorE at 746.638 kb on + strand, within sorE at 746.639 kb on - strand, within sorE at 746.649 kb on - strand, within sorE at 746.663 kb on + strand, within sorE at 746.693 kb on + strand, within sorE at 746.693 kb on + strand, within sorE at 746.722 kb on + strand, within sorE at 746.727 kb on + strand, within sorE at 746.779 kb on + strand, within sorE at 746.780 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.897 kb on + strand, within sorE at 746.897 kb on + strand, within sorE at 746.905 kb on + strand, within sorE at 746.913 kb on - strand, within sorE at 746.913 kb on - strand, within sorE at 747.007 kb on + strand, within sorE at 747.007 kb on + strand, within sorE at 747.007 kb on + strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.081 kb on - strand, within sorE at 747.081 kb on - strand, within sorE at 747.092 kb on + strand, within sorE at 747.092 kb on + strand, within sorE at 747.093 kb on - strand, within sorE at 747.224 kb on + strand at 747.234 kb on - strand at 747.238 kb on - strand at 747.238 kb on - strand at 747.329 kb on - strand at 747.375 kb on - strand at 747.441 kb on + strand at 747.451 kb on - strand at 747.458 kb on - strand at 747.472 kb on + strand at 747.523 kb on + strand at 747.524 kb on - strand at 747.524 kb on - strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.570 kb on + strand at 747.571 kb on - strand at 747.571 kb on - strand at 747.592 kb on + strand at 747.593 kb on - strand at 747.593 kb on - strand at 747.623 kb on - strand at 747.630 kb on - strand at 747.630 kb on - strand at 747.717 kb on - strand, within pepE at 747.753 kb on + strand, within pepE at 747.753 kb on + strand, within pepE at 747.754 kb on - strand, within pepE at 747.812 kb on + strand, within pepE at 747.875 kb on + strand, within pepE at 747.876 kb on - strand, within pepE at 747.926 kb on + strand, within pepE at 747.927 kb on - strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.955 kb on - strand, within pepE at 747.956 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.002 kb on - strand, within pepE at 748.002 kb on - strand, within pepE at 748.014 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.206 kb on - strand, within pepE at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.242 kb on + strand at 748.243 kb on - strand at 748.243 kb on - strand at 748.297 kb on - strand at 748.336 kb on - strand at 748.364 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.373 kb on + strand at 748.387 kb on + strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.390 kb on + strand at 748.391 kb on - strand at 748.438 kb on + strand at 748.439 kb on - strand at 748.439 kb on - strand at 748.475 kb on + strand at 748.475 kb on + strand at 748.475 kb on + strand at 748.476 kb on - strand at 748.476 kb on - strand at 748.485 kb on + strand at 748.486 kb on - strand at 748.491 kb on + strand at 748.497 kb on + strand at 748.498 kb on - strand at 748.571 kb on + strand, within yjbB at 748.656 kb on + strand, within yjbB at 748.662 kb on - strand, within yjbB at 748.662 kb on - strand, within yjbB at 748.678 kb on + strand, within yjbB at 748.678 kb on + strand, within yjbB at 748.679 kb on - strand, within yjbB at 748.754 kb on + strand, within yjbB at 748.754 kb on + strand, within yjbB at 748.870 kb on + strand, within yjbB at 748.870 kb on + strand, within yjbB at 748.878 kb on - strand, within yjbB at 748.878 kb on - strand, within yjbB at 748.886 kb on + strand, within yjbB at 748.887 kb on - strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.888 kb on + strand, within yjbB at 748.889 kb on - strand, within yjbB at 748.901 kb on + strand, within yjbB at 748.902 kb on - strand, within yjbB at 748.917 kb on - strand, within yjbB at 748.917 kb on - strand, within yjbB at 748.958 kb on + strand, within yjbB at 748.959 kb on - strand, within yjbB at 748.959 kb on - strand, within yjbB at 749.043 kb on - strand, within yjbB at 749.070 kb on - strand, within yjbB at 749.076 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.166 kb on + strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.167 kb on - strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.176 kb on + strand, within yjbB at 749.177 kb on - strand, within yjbB at 749.177 kb on - strand, within yjbB at 749.191 kb on + strand, within yjbB at 749.191 kb on + strand, within yjbB at 749.264 kb on + strand, within yjbB at 749.265 kb on - strand, within yjbB at 749.285 kb on + strand, within yjbB at 749.286 kb on - strand, within yjbB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 746,638 + sorE MCAODC_03725 0.52 -2.6 746,638 + sorE MCAODC_03725 0.52 -0.7 746,639 - sorE MCAODC_03725 0.52 -0.9 746,649 - sorE MCAODC_03725 0.53 +0.0 746,663 + sorE MCAODC_03725 0.54 +0.5 746,693 + sorE MCAODC_03725 0.57 +0.1 746,693 + sorE MCAODC_03725 0.57 +0.5 746,722 + sorE MCAODC_03725 0.59 -1.4 746,727 + sorE MCAODC_03725 0.59 +0.6 746,779 + sorE MCAODC_03725 0.64 -0.4 746,780 - sorE MCAODC_03725 0.64 -2.1 746,858 - sorE MCAODC_03725 0.70 +0.3 746,858 - sorE MCAODC_03725 0.70 -0.1 746,858 - sorE MCAODC_03725 0.70 -0.4 746,897 + sorE MCAODC_03725 0.73 -0.3 746,897 + sorE MCAODC_03725 0.73 -1.4 746,905 + sorE MCAODC_03725 0.74 +0.3 746,913 - sorE MCAODC_03725 0.74 -0.5 746,913 - sorE MCAODC_03725 0.74 -0.1 747,007 + sorE MCAODC_03725 0.82 +1.5 747,007 + sorE MCAODC_03725 0.82 -0.2 747,007 + sorE MCAODC_03725 0.82 +0.4 747,008 - sorE MCAODC_03725 0.82 -0.1 747,008 - sorE MCAODC_03725 0.82 +0.4 747,008 - sorE MCAODC_03725 0.82 +0.6 747,008 - sorE MCAODC_03725 0.82 -2.9 747,080 + sorE MCAODC_03725 0.88 +0.1 747,080 + sorE MCAODC_03725 0.88 +1.3 747,080 + sorE MCAODC_03725 0.88 -0.0 747,080 + sorE MCAODC_03725 0.88 +0.5 747,081 - sorE MCAODC_03725 0.88 +0.5 747,081 - sorE MCAODC_03725 0.88 +0.2 747,092 + sorE MCAODC_03725 0.89 -0.2 747,092 + sorE MCAODC_03725 0.89 +0.8 747,093 - sorE MCAODC_03725 0.89 +1.6 747,224 + +0.2 747,234 - -0.5 747,238 - +0.5 747,238 - +0.4 747,329 - -1.1 747,375 - -0.8 747,441 + +0.0 747,451 - -1.8 747,458 - -0.4 747,472 + -0.1 747,523 + -0.5 747,524 - +0.3 747,524 - +0.6 747,548 + -0.4 747,548 + +0.1 747,548 + +0.5 747,548 + -0.4 747,549 - -0.2 747,549 - +1.7 747,549 - +0.5 747,570 + -0.2 747,571 - -0.7 747,571 - -0.0 747,592 + -0.8 747,593 - -0.3 747,593 - +0.5 747,623 - -1.1 747,630 - -0.0 747,630 - +0.7 747,717 - pepE MCAODC_03730 0.16 -1.0 747,753 + pepE MCAODC_03730 0.21 -0.1 747,753 + pepE MCAODC_03730 0.21 -0.1 747,754 - pepE MCAODC_03730 0.21 +0.1 747,812 + pepE MCAODC_03730 0.29 -0.4 747,875 + pepE MCAODC_03730 0.39 -0.1 747,876 - pepE MCAODC_03730 0.39 -2.0 747,926 + pepE MCAODC_03730 0.46 -0.6 747,927 - pepE MCAODC_03730 0.46 +0.8 747,954 + pepE MCAODC_03730 0.50 +0.6 747,954 + pepE MCAODC_03730 0.50 -0.8 747,954 + pepE MCAODC_03730 0.50 +0.7 747,954 + pepE MCAODC_03730 0.50 -0.6 747,954 + pepE MCAODC_03730 0.50 -1.1 747,954 + pepE MCAODC_03730 0.50 +0.0 747,955 - pepE MCAODC_03730 0.50 -0.6 747,956 + pepE MCAODC_03730 0.50 +0.0 748,001 + pepE MCAODC_03730 0.57 -0.5 748,001 + pepE MCAODC_03730 0.57 -0.1 748,002 - pepE MCAODC_03730 0.57 +0.4 748,002 - pepE MCAODC_03730 0.57 -0.6 748,014 - pepE MCAODC_03730 0.59 +1.3 748,131 - pepE MCAODC_03730 0.76 -0.2 748,131 - pepE MCAODC_03730 0.76 -0.1 748,206 - pepE MCAODC_03730 0.87 +0.5 748,242 + -1.4 748,242 + -0.7 748,242 + +0.1 748,242 + +0.1 748,242 + -0.7 748,243 - -0.2 748,243 - -0.3 748,297 - +1.2 748,336 - +0.4 748,364 + -1.5 748,373 + +0.8 748,373 + -0.9 748,373 + -1.2 748,373 + +0.8 748,387 + +0.4 748,388 - +0.6 748,388 - +0.3 748,390 + +0.2 748,391 - +0.0 748,438 + +1.2 748,439 - +0.1 748,439 - -1.3 748,475 + -0.2 748,475 + -0.3 748,475 + -1.9 748,476 - +0.8 748,476 - -0.4 748,485 + -0.1 748,486 - -0.1 748,491 + -0.1 748,497 + -0.8 748,498 - -0.2 748,571 + yjbB MCAODC_03735 0.11 -0.5 748,656 + yjbB MCAODC_03735 0.16 -0.2 748,662 - yjbB MCAODC_03735 0.17 +0.2 748,662 - yjbB MCAODC_03735 0.17 -0.8 748,678 + yjbB MCAODC_03735 0.18 -0.0 748,678 + yjbB MCAODC_03735 0.18 +0.2 748,679 - yjbB MCAODC_03735 0.18 +0.9 748,754 + yjbB MCAODC_03735 0.22 +0.8 748,754 + yjbB MCAODC_03735 0.22 -1.0 748,870 + yjbB MCAODC_03735 0.29 -0.2 748,870 + yjbB MCAODC_03735 0.29 -0.5 748,878 - yjbB MCAODC_03735 0.30 +0.6 748,878 - yjbB MCAODC_03735 0.30 -0.7 748,886 + yjbB MCAODC_03735 0.30 -1.3 748,887 - yjbB MCAODC_03735 0.31 -0.7 748,888 + yjbB MCAODC_03735 0.31 +0.8 748,888 + yjbB MCAODC_03735 0.31 -0.4 748,888 + yjbB MCAODC_03735 0.31 -0.3 748,889 - yjbB MCAODC_03735 0.31 +0.0 748,901 + yjbB MCAODC_03735 0.31 +0.9 748,902 - yjbB MCAODC_03735 0.31 -3.6 748,917 - yjbB MCAODC_03735 0.32 +1.3 748,917 - yjbB MCAODC_03735 0.32 -0.5 748,958 + yjbB MCAODC_03735 0.35 -0.6 748,959 - yjbB MCAODC_03735 0.35 -0.2 748,959 - yjbB MCAODC_03735 0.35 +0.4 749,043 - yjbB MCAODC_03735 0.40 +0.7 749,070 - yjbB MCAODC_03735 0.42 -1.1 749,076 + yjbB MCAODC_03735 0.42 +0.6 749,166 + yjbB MCAODC_03735 0.48 +0.8 749,166 + yjbB MCAODC_03735 0.48 +0.2 749,166 + yjbB MCAODC_03735 0.48 +0.4 749,166 + yjbB MCAODC_03735 0.48 -0.0 749,166 + yjbB MCAODC_03735 0.48 -0.4 749,166 + yjbB MCAODC_03735 0.48 -2.8 749,167 - yjbB MCAODC_03735 0.48 -1.4 749,167 - yjbB MCAODC_03735 0.48 +0.1 749,167 - yjbB MCAODC_03735 0.48 +0.1 749,167 - yjbB MCAODC_03735 0.48 +1.2 749,167 - yjbB MCAODC_03735 0.48 +0.6 749,167 - yjbB MCAODC_03735 0.48 +0.4 749,167 - yjbB MCAODC_03735 0.48 +0.4 749,167 - yjbB MCAODC_03735 0.48 -0.1 749,176 + yjbB MCAODC_03735 0.48 +0.8 749,176 + yjbB MCAODC_03735 0.48 +0.8 749,176 + yjbB MCAODC_03735 0.48 +0.3 749,176 + yjbB MCAODC_03735 0.48 -0.4 749,177 - yjbB MCAODC_03735 0.48 +0.1 749,177 - yjbB MCAODC_03735 0.48 +0.2 749,191 + yjbB MCAODC_03735 0.49 -0.4 749,191 + yjbB MCAODC_03735 0.49 +0.5 749,264 + yjbB MCAODC_03735 0.54 +0.5 749,265 - yjbB MCAODC_03735 0.54 -1.0 749,285 + yjbB MCAODC_03735 0.55 -2.8 749,286 - yjbB MCAODC_03735 0.55 +0.4
Or see this region's nucleotide sequence