Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xylE and psiE are separated by 43 nucleotides psiE and yjbH are separated by 594 nucleotides
MCAODC_03635: xylE - D-xylose transporter XylE, at 729,383 to 730,858
xylE
MCAODC_03640: psiE - phosphate-starvation-inducible protein PsiE, at 730,902 to 731,312
psiE
MCAODC_03645: yjbH - Uncharacterized lipoprotein YjbH, at 731,907 to 734,003
yjbH
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.912 kb on + strand, within xylE at 729.984 kb on - strand, within xylE at 729.985 kb on + strand, within xylE at 729.986 kb on - strand, within xylE at 729.986 kb on - strand, within xylE at 729.986 kb on - strand, within xylE at 730.003 kb on + strand, within xylE at 730.023 kb on + strand, within xylE at 730.023 kb on + strand, within xylE at 730.034 kb on + strand, within xylE at 730.035 kb on - strand, within xylE at 730.035 kb on - strand, within xylE at 730.035 kb on - strand, within xylE at 730.097 kb on - strand, within xylE at 730.112 kb on - strand, within xylE at 730.140 kb on + strand, within xylE at 730.274 kb on + strand, within xylE at 730.339 kb on + strand, within xylE at 730.340 kb on - strand, within xylE at 730.351 kb on + strand, within xylE at 730.351 kb on + strand, within xylE at 730.351 kb on + strand, within xylE at 730.351 kb on + strand, within xylE at 730.381 kb on + strand, within xylE at 730.382 kb on - strand, within xylE at 730.405 kb on + strand, within xylE at 730.406 kb on - strand, within xylE at 730.447 kb on + strand, within xylE at 730.448 kb on - strand, within xylE at 730.500 kb on + strand, within xylE at 730.517 kb on + strand, within xylE at 730.517 kb on + strand, within xylE at 730.517 kb on + strand, within xylE at 730.517 kb on + strand, within xylE at 730.517 kb on + strand, within xylE at 730.518 kb on - strand, within xylE at 730.518 kb on - strand, within xylE at 730.518 kb on - strand, within xylE at 730.518 kb on - strand, within xylE at 730.518 kb on - strand, within xylE at 730.518 kb on - strand, within xylE at 730.597 kb on + strand, within xylE at 730.597 kb on + strand, within xylE at 730.640 kb on + strand, within xylE at 730.640 kb on + strand, within xylE at 730.640 kb on + strand, within xylE at 730.641 kb on - strand, within xylE at 730.641 kb on - strand, within xylE at 730.641 kb on - strand, within xylE at 730.724 kb on + strand at 730.732 kb on + strand at 730.733 kb on - strand at 730.787 kb on - strand at 730.787 kb on - strand at 730.849 kb on + strand at 730.856 kb on + strand at 730.857 kb on - strand at 730.904 kb on - strand at 730.954 kb on - strand, within psiE at 730.997 kb on + strand, within psiE at 730.997 kb on + strand, within psiE at 730.998 kb on - strand, within psiE at 731.042 kb on - strand, within psiE at 731.050 kb on + strand, within psiE at 731.123 kb on - strand, within psiE at 731.139 kb on + strand, within psiE at 731.149 kb on + strand, within psiE at 731.225 kb on + strand, within psiE at 731.225 kb on + strand, within psiE at 731.226 kb on - strand, within psiE at 731.257 kb on - strand, within psiE at 731.257 kb on - strand, within psiE at 731.279 kb on + strand at 731.312 kb on + strand at 731.312 kb on + strand at 731.312 kb on + strand at 731.313 kb on - strand at 731.319 kb on - strand at 731.346 kb on + strand at 731.347 kb on - strand at 731.347 kb on - strand at 731.347 kb on - strand at 731.347 kb on - strand at 731.385 kb on + strand at 731.434 kb on - strand at 731.435 kb on + strand at 731.435 kb on + strand at 731.435 kb on + strand at 731.435 kb on + strand at 731.436 kb on - strand at 731.436 kb on - strand at 731.436 kb on - strand at 731.590 kb on + strand at 731.590 kb on + strand at 731.590 kb on + strand at 731.590 kb on + strand at 731.590 kb on + strand at 731.590 kb on + strand at 731.640 kb on + strand at 731.663 kb on + strand at 731.663 kb on + strand at 731.664 kb on - strand at 731.664 kb on - strand at 731.664 kb on - strand at 731.689 kb on + strand at 731.700 kb on + strand at 731.802 kb on - strand at 731.858 kb on + strand at 731.925 kb on - strand at 731.944 kb on + strand at 731.945 kb on - strand at 731.945 kb on - strand at 731.945 kb on - strand at 731.945 kb on - strand at 731.945 kb on - strand at 731.945 kb on - strand at 731.957 kb on + strand at 732.061 kb on + strand at 732.061 kb on + strand at 732.061 kb on + strand at 732.061 kb on + strand at 732.061 kb on + strand at 732.061 kb on + strand at 732.062 kb on - strand at 732.062 kb on - strand at 732.062 kb on - strand at 732.062 kb on - strand at 732.062 kb on - strand at 732.092 kb on - strand at 732.158 kb on + strand, within yjbH at 732.215 kb on + strand, within yjbH at 732.215 kb on + strand, within yjbH at 732.216 kb on - strand, within yjbH at 732.216 kb on - strand, within yjbH at 732.281 kb on - strand, within yjbH at 732.281 kb on - strand, within yjbH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 729,912 + xylE MCAODC_03635 0.36 -1.0 729,984 - xylE MCAODC_03635 0.41 +1.1 729,985 + xylE MCAODC_03635 0.41 -0.0 729,986 - xylE MCAODC_03635 0.41 +0.2 729,986 - xylE MCAODC_03635 0.41 +1.2 729,986 - xylE MCAODC_03635 0.41 -2.3 730,003 + xylE MCAODC_03635 0.42 +1.0 730,023 + xylE MCAODC_03635 0.43 +2.0 730,023 + xylE MCAODC_03635 0.43 -1.2 730,034 + xylE MCAODC_03635 0.44 -0.9 730,035 - xylE MCAODC_03635 0.44 +0.3 730,035 - xylE MCAODC_03635 0.44 +0.4 730,035 - xylE MCAODC_03635 0.44 -0.1 730,097 - xylE MCAODC_03635 0.48 -1.1 730,112 - xylE MCAODC_03635 0.49 -0.0 730,140 + xylE MCAODC_03635 0.51 -0.4 730,274 + xylE MCAODC_03635 0.60 -0.2 730,339 + xylE MCAODC_03635 0.65 -0.6 730,340 - xylE MCAODC_03635 0.65 +0.3 730,351 + xylE MCAODC_03635 0.66 +0.4 730,351 + xylE MCAODC_03635 0.66 -0.7 730,351 + xylE MCAODC_03635 0.66 +0.3 730,351 + xylE MCAODC_03635 0.66 -0.1 730,381 + xylE MCAODC_03635 0.68 -0.7 730,382 - xylE MCAODC_03635 0.68 +1.2 730,405 + xylE MCAODC_03635 0.69 +1.0 730,406 - xylE MCAODC_03635 0.69 -0.3 730,447 + xylE MCAODC_03635 0.72 -1.6 730,448 - xylE MCAODC_03635 0.72 +0.0 730,500 + xylE MCAODC_03635 0.76 -1.6 730,517 + xylE MCAODC_03635 0.77 -0.3 730,517 + xylE MCAODC_03635 0.77 +0.5 730,517 + xylE MCAODC_03635 0.77 -0.0 730,517 + xylE MCAODC_03635 0.77 -0.1 730,517 + xylE MCAODC_03635 0.77 +0.1 730,518 - xylE MCAODC_03635 0.77 -1.5 730,518 - xylE MCAODC_03635 0.77 -1.0 730,518 - xylE MCAODC_03635 0.77 -1.8 730,518 - xylE MCAODC_03635 0.77 -1.9 730,518 - xylE MCAODC_03635 0.77 -2.4 730,518 - xylE MCAODC_03635 0.77 -1.4 730,597 + xylE MCAODC_03635 0.82 -0.4 730,597 + xylE MCAODC_03635 0.82 +1.4 730,640 + xylE MCAODC_03635 0.85 -1.0 730,640 + xylE MCAODC_03635 0.85 +0.7 730,640 + xylE MCAODC_03635 0.85 +0.8 730,641 - xylE MCAODC_03635 0.85 +0.4 730,641 - xylE MCAODC_03635 0.85 -0.5 730,641 - xylE MCAODC_03635 0.85 +0.5 730,724 + +0.0 730,732 + +0.2 730,733 - -0.1 730,787 - +0.9 730,787 - +0.7 730,849 + +0.1 730,856 + -0.1 730,857 - -0.2 730,904 - +0.2 730,954 - psiE MCAODC_03640 0.13 -1.2 730,997 + psiE MCAODC_03640 0.23 +0.4 730,997 + psiE MCAODC_03640 0.23 +0.1 730,998 - psiE MCAODC_03640 0.23 +0.3 731,042 - psiE MCAODC_03640 0.34 +2.5 731,050 + psiE MCAODC_03640 0.36 -0.7 731,123 - psiE MCAODC_03640 0.54 +1.7 731,139 + psiE MCAODC_03640 0.58 -1.8 731,149 + psiE MCAODC_03640 0.60 -1.0 731,225 + psiE MCAODC_03640 0.79 -0.1 731,225 + psiE MCAODC_03640 0.79 -1.4 731,226 - psiE MCAODC_03640 0.79 -0.6 731,257 - psiE MCAODC_03640 0.86 +1.2 731,257 - psiE MCAODC_03640 0.86 -0.3 731,279 + -0.1 731,312 + -0.4 731,312 + +1.2 731,312 + +0.3 731,313 - -0.0 731,319 - +1.6 731,346 + -0.8 731,347 - -0.3 731,347 - +0.3 731,347 - +0.7 731,347 - +0.4 731,385 + -1.6 731,434 - -0.3 731,435 + -0.8 731,435 + +0.2 731,435 + -0.0 731,435 + +0.5 731,436 - -0.2 731,436 - -0.0 731,436 - -1.2 731,590 + -0.3 731,590 + +0.4 731,590 + -3.2 731,590 + +0.1 731,590 + +0.1 731,590 + -1.5 731,640 + -1.5 731,663 + +0.1 731,663 + -2.5 731,664 - -0.4 731,664 - +0.2 731,664 - -0.3 731,689 + -1.6 731,700 + +1.4 731,802 - +0.1 731,858 + +0.1 731,925 - -0.8 731,944 + +1.1 731,945 - +2.5 731,945 - +0.1 731,945 - +0.1 731,945 - +0.0 731,945 - +0.9 731,945 - +0.7 731,957 + +0.1 732,061 + -0.5 732,061 + -0.4 732,061 + -0.7 732,061 + +0.6 732,061 + +0.1 732,061 + +0.6 732,062 - +0.7 732,062 - +1.1 732,062 - -0.7 732,062 - +0.0 732,062 - -0.1 732,092 - +1.0 732,158 + yjbH MCAODC_03645 0.12 +1.2 732,215 + yjbH MCAODC_03645 0.15 +1.4 732,215 + yjbH MCAODC_03645 0.15 +1.3 732,216 - yjbH MCAODC_03645 0.15 +0.3 732,216 - yjbH MCAODC_03645 0.15 -1.4 732,281 - yjbH MCAODC_03645 0.18 -0.4 732,281 - yjbH MCAODC_03645 0.18 -0.3
Or see this region's nucleotide sequence