Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aphA and MCAODC_03425 are separated by 400 nucleotides MCAODC_03425 and tyrB are separated by 338 nucleotides
MCAODC_03420: aphA - acid phosphatase AphA, at 690,791 to 691,504
aphA
MCAODC_03425: MCAODC_03425 - hypothetical protein, at 691,905 to 692,264
_03425
MCAODC_03430: tyrB - aromatic amino acid transaminase, at 692,603 to 693,796
tyrB
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.917 kb on - strand, within aphA at 690.917 kb on - strand, within aphA at 691.124 kb on + strand, within aphA at 691.124 kb on + strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.132 kb on + strand, within aphA at 691.132 kb on + strand, within aphA at 691.133 kb on - strand, within aphA at 691.205 kb on + strand, within aphA at 691.221 kb on + strand, within aphA at 691.221 kb on + strand, within aphA at 691.222 kb on - strand, within aphA at 691.283 kb on + strand, within aphA at 691.399 kb on + strand, within aphA at 691.519 kb on - strand at 691.525 kb on + strand at 691.604 kb on - strand at 691.639 kb on + strand at 691.648 kb on + strand at 691.699 kb on + strand at 691.705 kb on + strand at 691.863 kb on - strand at 691.875 kb on - strand at 691.946 kb on - strand, within MCAODC_03425 at 692.010 kb on - strand, within MCAODC_03425 at 692.107 kb on + strand, within MCAODC_03425 at 692.138 kb on + strand, within MCAODC_03425 at 692.142 kb on + strand, within MCAODC_03425 at 692.197 kb on - strand, within MCAODC_03425 at 692.531 kb on - strand at 692.605 kb on - strand at 692.605 kb on - strand at 692.650 kb on + strand at 692.651 kb on - strand at 692.691 kb on + strand at 692.692 kb on - strand at 692.712 kb on - strand at 692.712 kb on - strand at 692.735 kb on + strand, within tyrB at 692.743 kb on + strand, within tyrB at 692.744 kb on - strand, within tyrB at 692.745 kb on + strand, within tyrB at 692.745 kb on + strand, within tyrB at 692.746 kb on - strand, within tyrB at 692.767 kb on + strand, within tyrB at 692.807 kb on + strand, within tyrB at 692.808 kb on - strand, within tyrB at 692.808 kb on - strand, within tyrB at 692.810 kb on + strand, within tyrB at 692.810 kb on + strand, within tyrB at 692.810 kb on + strand, within tyrB at 692.849 kb on - strand, within tyrB at 692.861 kb on + strand, within tyrB at 692.946 kb on + strand, within tyrB at 692.946 kb on + strand, within tyrB at 693.153 kb on + strand, within tyrB at 693.153 kb on + strand, within tyrB at 693.154 kb on - strand, within tyrB at 693.161 kb on - strand, within tyrB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 690,917 - aphA MCAODC_03420 0.18 -0.0 690,917 - aphA MCAODC_03420 0.18 -1.8 691,124 + aphA MCAODC_03420 0.47 +0.7 691,124 + aphA MCAODC_03420 0.47 +0.1 691,125 - aphA MCAODC_03420 0.47 -0.6 691,125 - aphA MCAODC_03420 0.47 +0.2 691,125 - aphA MCAODC_03420 0.47 -0.3 691,125 - aphA MCAODC_03420 0.47 +1.0 691,125 - aphA MCAODC_03420 0.47 +0.8 691,125 - aphA MCAODC_03420 0.47 +0.1 691,132 + aphA MCAODC_03420 0.48 -0.6 691,132 + aphA MCAODC_03420 0.48 +0.7 691,133 - aphA MCAODC_03420 0.48 +0.4 691,205 + aphA MCAODC_03420 0.58 +0.9 691,221 + aphA MCAODC_03420 0.60 -1.8 691,221 + aphA MCAODC_03420 0.60 -0.0 691,222 - aphA MCAODC_03420 0.60 -1.6 691,283 + aphA MCAODC_03420 0.69 +1.2 691,399 + aphA MCAODC_03420 0.85 -0.6 691,519 - -0.5 691,525 + -0.8 691,604 - -0.0 691,639 + +0.2 691,648 + +0.1 691,699 + +1.8 691,705 + +1.2 691,863 - +1.3 691,875 - -0.9 691,946 - MCAODC_03425 0.11 +0.6 692,010 - MCAODC_03425 0.29 +1.1 692,107 + MCAODC_03425 0.56 +1.8 692,138 + MCAODC_03425 0.65 +0.4 692,142 + MCAODC_03425 0.66 +0.2 692,197 - MCAODC_03425 0.81 +0.8 692,531 - -0.3 692,605 - -0.2 692,605 - +0.6 692,650 + -0.4 692,651 - -0.2 692,691 + +0.8 692,692 - -0.3 692,712 - +0.3 692,712 - -0.0 692,735 + tyrB MCAODC_03430 0.11 -0.3 692,743 + tyrB MCAODC_03430 0.12 +1.1 692,744 - tyrB MCAODC_03430 0.12 -1.1 692,745 + tyrB MCAODC_03430 0.12 -0.1 692,745 + tyrB MCAODC_03430 0.12 -0.3 692,746 - tyrB MCAODC_03430 0.12 -0.2 692,767 + tyrB MCAODC_03430 0.14 -0.5 692,807 + tyrB MCAODC_03430 0.17 +0.8 692,808 - tyrB MCAODC_03430 0.17 +0.1 692,808 - tyrB MCAODC_03430 0.17 -0.2 692,810 + tyrB MCAODC_03430 0.17 +0.0 692,810 + tyrB MCAODC_03430 0.17 -0.1 692,810 + tyrB MCAODC_03430 0.17 +0.2 692,849 - tyrB MCAODC_03430 0.21 -0.8 692,861 + tyrB MCAODC_03430 0.22 -0.2 692,946 + tyrB MCAODC_03430 0.29 +0.3 692,946 + tyrB MCAODC_03430 0.29 +0.1 693,153 + tyrB MCAODC_03430 0.46 +1.5 693,153 + tyrB MCAODC_03430 0.46 +0.1 693,154 - tyrB MCAODC_03430 0.46 -0.4 693,161 - tyrB MCAODC_03430 0.47 +0.7
Or see this region's nucleotide sequence