Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02025 and yjiH are separated by 140 nucleotides yjiH and iadA overlap by 4 nucleotides iadA and iadA are separated by 12 nucleotides
MCAODC_02025: MCAODC_02025 - hypothetical protein, at 399,489 to 399,974
_02025
MCAODC_02030: yjiH - Uncharacterized protein YjiH, at 400,115 to 400,798
yjiH
MCAODC_02035: iadA - beta-aspartyl-peptidase, at 400,795 to 401,256
iadA
MCAODC_02040: iadA - beta-aspartyl-peptidase, at 401,269 to 402,441
iadA
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 399.856 kb on - strand, within MCAODC_02025 at 399.856 kb on - strand, within MCAODC_02025 at 399.896 kb on - strand, within MCAODC_02025 at 399.899 kb on + strand, within MCAODC_02025 at 399.899 kb on + strand, within MCAODC_02025 at 399.973 kb on - strand at 399.973 kb on - strand at 400.011 kb on + strand at 400.011 kb on + strand at 400.011 kb on + strand at 400.011 kb on + strand at 400.011 kb on + strand at 400.012 kb on - strand at 400.012 kb on - strand at 400.012 kb on - strand at 400.012 kb on - strand at 400.012 kb on - strand at 400.115 kb on - strand at 400.138 kb on - strand at 400.171 kb on + strand at 400.200 kb on + strand, within yjiH at 400.201 kb on - strand, within yjiH at 400.201 kb on - strand, within yjiH at 400.201 kb on - strand, within yjiH at 400.403 kb on - strand, within yjiH at 400.403 kb on - strand, within yjiH at 400.432 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.693 kb on - strand, within yjiH at 400.698 kb on + strand, within yjiH at 400.754 kb on - strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.828 kb on - strand at 400.857 kb on + strand, within iadA at 400.858 kb on - strand, within iadA at 400.953 kb on + strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 401.012 kb on + strand, within iadA at 401.028 kb on + strand, within iadA at 401.029 kb on - strand, within iadA at 401.078 kb on + strand, within iadA at 401.116 kb on + strand, within iadA at 401.116 kb on + strand, within iadA at 401.120 kb on + strand, within iadA at 401.121 kb on - strand, within iadA at 401.121 kb on - strand, within iadA at 401.320 kb on + strand at 401.321 kb on - strand at 401.388 kb on + strand, within iadA at 401.389 kb on - strand, within iadA at 401.389 kb on - strand, within iadA at 401.409 kb on - strand, within iadA at 401.409 kb on - strand, within iadA at 401.461 kb on - strand, within iadA at 401.535 kb on - strand, within iadA at 401.593 kb on - strand, within iadA at 401.593 kb on - strand, within iadA at 401.678 kb on - strand, within iadA at 401.678 kb on - strand, within iadA at 401.794 kb on + strand, within iadA at 401.795 kb on - strand, within iadA at 401.795 kb on - strand, within iadA at 401.884 kb on - strand, within iadA at 401.884 kb on - strand, within iadA at 401.894 kb on + strand, within iadA at 401.894 kb on + strand, within iadA at 401.894 kb on + strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.972 kb on + strand, within iadA at 401.972 kb on + strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 402.229 kb on + strand, within iadA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 399,856 - MCAODC_02025 0.76 +1.3 399,856 - MCAODC_02025 0.76 -0.3 399,896 - MCAODC_02025 0.84 -0.2 399,899 + MCAODC_02025 0.84 +0.1 399,899 + MCAODC_02025 0.84 +1.4 399,973 - -1.7 399,973 - +1.2 400,011 + +0.0 400,011 + +0.6 400,011 + +0.4 400,011 + -0.3 400,011 + +0.2 400,012 - +0.4 400,012 - -0.2 400,012 - +0.3 400,012 - +0.1 400,012 - +0.9 400,115 - +0.3 400,138 - +0.2 400,171 + +0.2 400,200 + yjiH MCAODC_02030 0.12 -0.7 400,201 - yjiH MCAODC_02030 0.13 +0.1 400,201 - yjiH MCAODC_02030 0.13 -0.1 400,201 - yjiH MCAODC_02030 0.13 +1.3 400,403 - yjiH MCAODC_02030 0.42 +0.3 400,403 - yjiH MCAODC_02030 0.42 -0.1 400,432 - yjiH MCAODC_02030 0.46 +0.6 400,450 - yjiH MCAODC_02030 0.49 +0.5 400,450 - yjiH MCAODC_02030 0.49 -0.5 400,450 - yjiH MCAODC_02030 0.49 +0.8 400,640 + yjiH MCAODC_02030 0.77 +0.9 400,640 + yjiH MCAODC_02030 0.77 -0.6 400,640 + yjiH MCAODC_02030 0.77 +0.7 400,640 + yjiH MCAODC_02030 0.77 +0.1 400,640 + yjiH MCAODC_02030 0.77 -2.3 400,641 - yjiH MCAODC_02030 0.77 +0.6 400,641 - yjiH MCAODC_02030 0.77 +3.1 400,641 - yjiH MCAODC_02030 0.77 +0.2 400,641 - yjiH MCAODC_02030 0.77 -0.3 400,641 - yjiH MCAODC_02030 0.77 -0.2 400,693 - yjiH MCAODC_02030 0.85 +0.0 400,698 + yjiH MCAODC_02030 0.85 +0.1 400,754 - +0.2 400,827 + +0.3 400,827 + +0.0 400,827 + -0.2 400,828 - +0.5 400,857 + iadA MCAODC_02035 0.13 -1.4 400,858 - iadA MCAODC_02035 0.14 -0.6 400,953 + iadA MCAODC_02035 0.34 +0.4 400,954 - iadA MCAODC_02035 0.34 +0.0 400,954 - iadA MCAODC_02035 0.34 +0.1 400,954 - iadA MCAODC_02035 0.34 +1.0 400,954 - iadA MCAODC_02035 0.34 +0.3 401,012 + iadA MCAODC_02035 0.47 -0.4 401,028 + iadA MCAODC_02035 0.50 -0.1 401,029 - iadA MCAODC_02035 0.51 -0.7 401,078 + iadA MCAODC_02035 0.61 +0.5 401,116 + iadA MCAODC_02035 0.69 -0.2 401,116 + iadA MCAODC_02035 0.69 -1.2 401,120 + iadA MCAODC_02035 0.70 -2.7 401,121 - iadA MCAODC_02035 0.71 +0.3 401,121 - iadA MCAODC_02035 0.71 +0.5 401,320 + -0.2 401,321 - -1.4 401,388 + iadA MCAODC_02040 0.10 -0.3 401,389 - iadA MCAODC_02040 0.10 -0.5 401,389 - iadA MCAODC_02040 0.10 +0.7 401,409 - iadA MCAODC_02040 0.12 +0.1 401,409 - iadA MCAODC_02040 0.12 -0.1 401,461 - iadA MCAODC_02040 0.16 -0.8 401,535 - iadA MCAODC_02040 0.23 +0.3 401,593 - iadA MCAODC_02040 0.28 +0.1 401,593 - iadA MCAODC_02040 0.28 +0.9 401,678 - iadA MCAODC_02040 0.35 -0.5 401,678 - iadA MCAODC_02040 0.35 +2.7 401,794 + iadA MCAODC_02040 0.45 -0.5 401,795 - iadA MCAODC_02040 0.45 -1.4 401,795 - iadA MCAODC_02040 0.45 -0.7 401,884 - iadA MCAODC_02040 0.52 -1.0 401,884 - iadA MCAODC_02040 0.52 +0.4 401,894 + iadA MCAODC_02040 0.53 +0.3 401,894 + iadA MCAODC_02040 0.53 +1.3 401,894 + iadA MCAODC_02040 0.53 +0.4 401,902 - iadA MCAODC_02040 0.54 -0.4 401,902 - iadA MCAODC_02040 0.54 +0.8 401,902 - iadA MCAODC_02040 0.54 -0.2 401,902 - iadA MCAODC_02040 0.54 -0.5 401,902 - iadA MCAODC_02040 0.54 -1.1 401,906 - iadA MCAODC_02040 0.54 +0.4 401,906 - iadA MCAODC_02040 0.54 -2.0 401,906 - iadA MCAODC_02040 0.54 -0.3 401,906 - iadA MCAODC_02040 0.54 -0.8 401,906 - iadA MCAODC_02040 0.54 +0.1 401,972 + iadA MCAODC_02040 0.60 -0.6 401,972 + iadA MCAODC_02040 0.60 +0.2 401,973 - iadA MCAODC_02040 0.60 +0.8 401,973 - iadA MCAODC_02040 0.60 +0.0 401,973 - iadA MCAODC_02040 0.60 -0.1 401,973 - iadA MCAODC_02040 0.60 +1.0 402,229 + iadA MCAODC_02040 0.82 +0.9
Or see this region's nucleotide sequence