Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radA and serB are separated by 48 nucleotides serB and lplA are separated by 105 nucleotides
MCAODC_01710: radA - DNA repair protein RadA, at 331,548 to 332,930
radA
MCAODC_01715: serB - phosphoserine phosphatase, at 332,979 to 333,947
serB
MCAODC_01720: lplA - YtjB family periplasmic protein, at 334,053 to 335,741
lplA
Position (kb) 332
333
334 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 332.202 kb on + strand, within radA at 332.203 kb on - strand, within radA at 332.203 kb on - strand, within radA at 332.269 kb on - strand, within radA at 332.323 kb on + strand, within radA at 332.323 kb on + strand, within radA at 332.324 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.381 kb on + strand, within radA at 332.382 kb on - strand, within radA at 332.382 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.551 kb on + strand, within radA at 332.551 kb on + strand, within radA at 332.552 kb on - strand, within radA at 332.552 kb on - strand, within radA at 332.552 kb on - strand, within radA at 332.596 kb on - strand, within radA at 332.596 kb on - strand, within radA at 332.668 kb on - strand, within radA at 332.668 kb on - strand, within radA at 332.671 kb on - strand, within radA at 332.770 kb on + strand, within radA at 332.790 kb on - strand, within radA at 332.802 kb on - strand at 332.897 kb on + strand at 332.898 kb on - strand at 332.936 kb on - strand at 332.936 kb on - strand at 332.980 kb on + strand at 332.980 kb on + strand at 332.980 kb on + strand at 333.083 kb on - strand, within serB at 333.083 kb on - strand, within serB at 333.205 kb on + strand, within serB at 333.206 kb on - strand, within serB at 333.216 kb on + strand, within serB at 333.217 kb on - strand, within serB at 333.276 kb on + strand, within serB at 333.311 kb on - strand, within serB at 333.391 kb on - strand, within serB at 333.434 kb on + strand, within serB at 333.434 kb on + strand, within serB at 333.435 kb on - strand, within serB at 333.569 kb on + strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.803 kb on + strand, within serB at 333.803 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.821 kb on - strand, within serB at 333.821 kb on - strand, within serB at 333.879 kb on + strand at 333.935 kb on + strand at 333.936 kb on - strand at 333.936 kb on - strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.948 kb on + strand at 333.949 kb on - strand at 333.960 kb on - strand at 334.003 kb on + strand at 334.004 kb on - strand at 334.004 kb on - strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.025 kb on + strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.026 kb on - strand at 334.121 kb on - strand at 334.175 kb on + strand at 334.176 kb on - strand at 334.176 kb on - strand at 334.176 kb on - strand at 334.329 kb on + strand, within lplA at 334.329 kb on + strand, within lplA at 334.329 kb on + strand, within lplA at 334.330 kb on - strand, within lplA at 334.350 kb on - strand, within lplA at 334.424 kb on + strand, within lplA at 334.424 kb on + strand, within lplA at 334.425 kb on - strand, within lplA at 334.425 kb on - strand, within lplA at 334.499 kb on + strand, within lplA at 334.546 kb on + strand, within lplA at 334.582 kb on + strand, within lplA at 334.703 kb on + strand, within lplA at 334.703 kb on + strand, within lplA at 334.704 kb on - strand, within lplA at 334.704 kb on - strand, within lplA at 334.706 kb on + strand, within lplA at 334.706 kb on + strand, within lplA at 334.707 kb on - strand, within lplA at 334.758 kb on + strand, within lplA at 334.793 kb on + strand, within lplA at 334.794 kb on - strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.916 kb on + strand, within lplA at 334.916 kb on + strand, within lplA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 332,202 + radA MCAODC_01710 0.47 -0.6 332,203 - radA MCAODC_01710 0.47 -0.1 332,203 - radA MCAODC_01710 0.47 -0.3 332,269 - radA MCAODC_01710 0.52 -2.2 332,323 + radA MCAODC_01710 0.56 +1.0 332,323 + radA MCAODC_01710 0.56 +1.5 332,324 - radA MCAODC_01710 0.56 -0.3 332,355 - radA MCAODC_01710 0.58 -0.4 332,355 - radA MCAODC_01710 0.58 +0.4 332,370 + radA MCAODC_01710 0.59 -0.5 332,370 + radA MCAODC_01710 0.59 -0.7 332,370 + radA MCAODC_01710 0.59 -1.2 332,370 + radA MCAODC_01710 0.59 +1.5 332,371 - radA MCAODC_01710 0.60 -0.4 332,371 - radA MCAODC_01710 0.60 +0.2 332,371 - radA MCAODC_01710 0.60 -1.1 332,371 - radA MCAODC_01710 0.60 -1.3 332,381 + radA MCAODC_01710 0.60 +1.0 332,382 - radA MCAODC_01710 0.60 -0.6 332,382 - radA MCAODC_01710 0.60 -0.3 332,407 - radA MCAODC_01710 0.62 +0.4 332,407 - radA MCAODC_01710 0.62 +0.5 332,474 + radA MCAODC_01710 0.67 -0.4 332,474 + radA MCAODC_01710 0.67 +0.2 332,474 + radA MCAODC_01710 0.67 +0.0 332,474 + radA MCAODC_01710 0.67 -3.3 332,475 - radA MCAODC_01710 0.67 -0.9 332,475 - radA MCAODC_01710 0.67 -0.5 332,475 - radA MCAODC_01710 0.67 -2.2 332,475 - radA MCAODC_01710 0.67 -0.3 332,551 + radA MCAODC_01710 0.73 -0.8 332,551 + radA MCAODC_01710 0.73 -3.3 332,552 - radA MCAODC_01710 0.73 -1.8 332,552 - radA MCAODC_01710 0.73 +0.1 332,552 - radA MCAODC_01710 0.73 -0.5 332,596 - radA MCAODC_01710 0.76 -0.6 332,596 - radA MCAODC_01710 0.76 -1.1 332,668 - radA MCAODC_01710 0.81 -0.2 332,668 - radA MCAODC_01710 0.81 -0.6 332,671 - radA MCAODC_01710 0.81 -1.1 332,770 + radA MCAODC_01710 0.88 +0.1 332,790 - radA MCAODC_01710 0.90 -1.3 332,802 - -0.4 332,897 + -2.4 332,898 - -0.1 332,936 - -0.1 332,936 - -0.9 332,980 + -2.3 332,980 + +0.6 332,980 + +0.2 333,083 - serB MCAODC_01715 0.11 -3.5 333,083 - serB MCAODC_01715 0.11 +0.5 333,205 + serB MCAODC_01715 0.23 -3.3 333,206 - serB MCAODC_01715 0.23 -4.2 333,216 + serB MCAODC_01715 0.24 -5.0 333,217 - serB MCAODC_01715 0.25 -2.4 333,276 + serB MCAODC_01715 0.31 +0.5 333,311 - serB MCAODC_01715 0.34 -3.5 333,391 - serB MCAODC_01715 0.43 -3.0 333,434 + serB MCAODC_01715 0.47 -5.0 333,434 + serB MCAODC_01715 0.47 -4.2 333,435 - serB MCAODC_01715 0.47 -5.3 333,569 + serB MCAODC_01715 0.61 -4.8 333,570 - serB MCAODC_01715 0.61 -3.0 333,570 - serB MCAODC_01715 0.61 -4.3 333,570 - serB MCAODC_01715 0.61 -3.6 333,803 + serB MCAODC_01715 0.85 -4.9 333,803 + serB MCAODC_01715 0.85 +1.1 333,820 + serB MCAODC_01715 0.87 -3.6 333,820 + serB MCAODC_01715 0.87 -1.9 333,821 - serB MCAODC_01715 0.87 -4.7 333,821 - serB MCAODC_01715 0.87 -4.8 333,879 + +0.3 333,935 + -4.1 333,936 - -2.4 333,936 - -4.8 333,948 + -3.4 333,948 + -5.0 333,948 + -3.3 333,948 + -2.5 333,949 - -1.1 333,960 - -0.0 334,003 + +0.9 334,004 - +0.5 334,004 - +0.4 334,025 + -0.1 334,025 + +0.6 334,025 + +0.6 334,025 + +0.7 334,025 + -0.0 334,025 + +1.7 334,026 - -0.7 334,026 - -0.6 334,026 - -0.3 334,026 - -0.1 334,026 - +0.3 334,026 - +1.2 334,026 - +0.7 334,121 - +1.5 334,175 + +0.8 334,176 - +0.3 334,176 - +1.1 334,176 - +1.8 334,329 + lplA MCAODC_01720 0.16 -2.0 334,329 + lplA MCAODC_01720 0.16 +0.5 334,329 + lplA MCAODC_01720 0.16 -1.7 334,330 - lplA MCAODC_01720 0.16 -0.3 334,350 - lplA MCAODC_01720 0.18 +0.2 334,424 + lplA MCAODC_01720 0.22 +0.3 334,424 + lplA MCAODC_01720 0.22 +0.7 334,425 - lplA MCAODC_01720 0.22 -0.0 334,425 - lplA MCAODC_01720 0.22 +0.7 334,499 + lplA MCAODC_01720 0.26 -0.5 334,546 + lplA MCAODC_01720 0.29 +0.9 334,582 + lplA MCAODC_01720 0.31 -1.1 334,703 + lplA MCAODC_01720 0.38 -0.5 334,703 + lplA MCAODC_01720 0.38 -2.2 334,704 - lplA MCAODC_01720 0.39 -0.1 334,704 - lplA MCAODC_01720 0.39 -0.6 334,706 + lplA MCAODC_01720 0.39 +0.6 334,706 + lplA MCAODC_01720 0.39 +0.5 334,707 - lplA MCAODC_01720 0.39 +1.6 334,758 + lplA MCAODC_01720 0.42 -1.6 334,793 + lplA MCAODC_01720 0.44 -0.6 334,794 - lplA MCAODC_01720 0.44 +0.0 334,858 + lplA MCAODC_01720 0.48 +0.4 334,858 + lplA MCAODC_01720 0.48 +0.9 334,858 + lplA MCAODC_01720 0.48 -2.0 334,892 + lplA MCAODC_01720 0.50 +0.6 334,892 + lplA MCAODC_01720 0.50 -1.4 334,892 + lplA MCAODC_01720 0.50 -0.0 334,892 + lplA MCAODC_01720 0.50 -0.4 334,916 + lplA MCAODC_01720 0.51 +2.1 334,916 + lplA MCAODC_01720 0.51 -0.6
Or see this region's nucleotide sequence