Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acnB and yacH are separated by 354 nucleotides yacH and lpdA are separated by 70 nucleotides
MCAODC_00995: acnB - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 178,626 to 181,223
acnB
MCAODC_01000: yacH - Uncharacterized protein YacH, at 181,578 to 183,431
yacH
MCAODC_01005: lpdA - dihydrolipoyl dehydrogenase, at 183,502 to 184,926
lpdA
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.948 kb on - strand, within acnB at 180.951 kb on - strand, within acnB at 181.087 kb on - strand at 181.298 kb on - strand at 181.498 kb on + strand at 181.499 kb on - strand at 181.511 kb on + strand at 181.512 kb on - strand at 181.657 kb on + strand at 181.658 kb on - strand at 181.658 kb on - strand at 181.659 kb on + strand at 181.659 kb on + strand at 181.659 kb on + strand at 181.660 kb on - strand at 181.660 kb on - strand at 181.660 kb on - strand at 181.660 kb on - strand at 181.661 kb on + strand at 181.661 kb on + strand at 181.661 kb on + strand at 181.661 kb on + strand at 181.662 kb on - strand at 181.662 kb on - strand at 181.662 kb on - strand at 181.662 kb on - strand at 181.663 kb on + strand at 181.663 kb on + strand at 181.663 kb on + strand at 181.663 kb on + strand at 181.663 kb on + strand at 181.664 kb on - strand at 181.737 kb on - strand at 181.810 kb on + strand, within yacH at 181.811 kb on - strand, within yacH at 181.839 kb on + strand, within yacH at 181.852 kb on + strand, within yacH at 181.853 kb on - strand, within yacH at 181.882 kb on - strand, within yacH at 181.931 kb on + strand, within yacH at 181.932 kb on - strand, within yacH at 181.932 kb on - strand, within yacH at 181.960 kb on + strand, within yacH at 181.961 kb on - strand, within yacH at 181.988 kb on + strand, within yacH at 182.165 kb on + strand, within yacH at 182.189 kb on - strand, within yacH at 182.222 kb on - strand, within yacH at 182.258 kb on + strand, within yacH at 182.313 kb on + strand, within yacH at 182.313 kb on + strand, within yacH at 182.313 kb on + strand, within yacH at 182.313 kb on + strand, within yacH at 182.314 kb on - strand, within yacH at 182.314 kb on - strand, within yacH at 182.314 kb on - strand, within yacH at 182.325 kb on + strand, within yacH at 182.325 kb on + strand, within yacH at 182.325 kb on + strand, within yacH at 182.326 kb on - strand, within yacH at 182.326 kb on - strand, within yacH at 182.326 kb on - strand, within yacH at 182.437 kb on - strand, within yacH at 182.438 kb on + strand, within yacH at 182.438 kb on + strand, within yacH at 182.438 kb on + strand, within yacH at 182.439 kb on - strand, within yacH at 182.439 kb on - strand, within yacH at 182.439 kb on - strand, within yacH at 182.439 kb on - strand, within yacH at 182.439 kb on - strand, within yacH at 182.453 kb on + strand, within yacH at 182.453 kb on + strand, within yacH at 182.454 kb on - strand, within yacH at 182.460 kb on + strand, within yacH at 182.460 kb on + strand, within yacH at 182.467 kb on + strand, within yacH at 182.468 kb on - strand, within yacH at 182.525 kb on + strand, within yacH at 182.526 kb on - strand, within yacH at 182.526 kb on - strand, within yacH at 182.529 kb on + strand, within yacH at 182.529 kb on + strand, within yacH at 182.530 kb on - strand, within yacH at 182.530 kb on - strand, within yacH at 182.530 kb on - strand, within yacH at 182.530 kb on - strand, within yacH at 182.576 kb on + strand, within yacH at 182.576 kb on + strand, within yacH at 182.577 kb on - strand, within yacH at 182.619 kb on - strand, within yacH at 182.637 kb on - strand, within yacH at 182.643 kb on - strand, within yacH at 182.649 kb on - strand, within yacH at 182.673 kb on + strand, within yacH at 182.679 kb on - strand, within yacH at 182.679 kb on - strand, within yacH at 182.691 kb on + strand, within yacH at 182.880 kb on - strand, within yacH at 182.895 kb on + strand, within yacH at 182.895 kb on + strand, within yacH at 183.167 kb on + strand, within yacH at 183.167 kb on + strand, within yacH at 183.344 kb on + strand at 183.344 kb on + strand at 183.443 kb on - strand at 183.503 kb on + strand at 183.504 kb on - strand at 183.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 180,948 - acnB MCAODC_00995 0.89 -0.3 180,951 - acnB MCAODC_00995 0.89 -0.5 181,087 - -0.2 181,298 - -2.1 181,498 + -0.1 181,499 - -0.4 181,511 + -0.3 181,512 - +0.8 181,657 + -0.5 181,658 - +0.7 181,658 - +0.9 181,659 + +0.4 181,659 + +0.7 181,659 + +0.3 181,660 - -0.2 181,660 - +0.4 181,660 - -2.5 181,660 - -0.0 181,661 + +0.4 181,661 + +1.3 181,661 + -1.5 181,661 + -0.2 181,662 - +0.1 181,662 - -0.1 181,662 - -2.4 181,662 - +1.0 181,663 + -3.2 181,663 + -3.1 181,663 + -2.5 181,663 + +1.0 181,663 + -0.8 181,664 - -0.1 181,737 - +0.5 181,810 + yacH MCAODC_01000 0.13 -0.8 181,811 - yacH MCAODC_01000 0.13 -1.5 181,839 + yacH MCAODC_01000 0.14 +0.3 181,852 + yacH MCAODC_01000 0.15 -0.7 181,853 - yacH MCAODC_01000 0.15 +1.0 181,882 - yacH MCAODC_01000 0.16 -1.2 181,931 + yacH MCAODC_01000 0.19 +1.1 181,932 - yacH MCAODC_01000 0.19 +0.7 181,932 - yacH MCAODC_01000 0.19 -0.2 181,960 + yacH MCAODC_01000 0.21 +0.1 181,961 - yacH MCAODC_01000 0.21 +1.1 181,988 + yacH MCAODC_01000 0.22 -0.8 182,165 + yacH MCAODC_01000 0.32 -0.2 182,189 - yacH MCAODC_01000 0.33 -0.4 182,222 - yacH MCAODC_01000 0.35 +0.3 182,258 + yacH MCAODC_01000 0.37 +0.1 182,313 + yacH MCAODC_01000 0.40 +0.2 182,313 + yacH MCAODC_01000 0.40 +0.1 182,313 + yacH MCAODC_01000 0.40 +0.1 182,313 + yacH MCAODC_01000 0.40 +0.2 182,314 - yacH MCAODC_01000 0.40 -0.1 182,314 - yacH MCAODC_01000 0.40 +0.7 182,314 - yacH MCAODC_01000 0.40 -0.7 182,325 + yacH MCAODC_01000 0.40 -1.7 182,325 + yacH MCAODC_01000 0.40 +0.5 182,325 + yacH MCAODC_01000 0.40 +0.8 182,326 - yacH MCAODC_01000 0.40 +0.6 182,326 - yacH MCAODC_01000 0.40 +1.0 182,326 - yacH MCAODC_01000 0.40 -0.9 182,437 - yacH MCAODC_01000 0.46 -0.5 182,438 + yacH MCAODC_01000 0.46 -0.9 182,438 + yacH MCAODC_01000 0.46 -2.5 182,438 + yacH MCAODC_01000 0.46 +0.1 182,439 - yacH MCAODC_01000 0.46 +0.3 182,439 - yacH MCAODC_01000 0.46 -0.2 182,439 - yacH MCAODC_01000 0.46 +0.2 182,439 - yacH MCAODC_01000 0.46 +0.8 182,439 - yacH MCAODC_01000 0.46 +0.3 182,453 + yacH MCAODC_01000 0.47 +2.2 182,453 + yacH MCAODC_01000 0.47 +1.2 182,454 - yacH MCAODC_01000 0.47 -0.1 182,460 + yacH MCAODC_01000 0.48 +0.1 182,460 + yacH MCAODC_01000 0.48 +0.1 182,467 + yacH MCAODC_01000 0.48 +0.2 182,468 - yacH MCAODC_01000 0.48 +1.0 182,525 + yacH MCAODC_01000 0.51 +1.3 182,526 - yacH MCAODC_01000 0.51 +0.4 182,526 - yacH MCAODC_01000 0.51 +1.2 182,529 + yacH MCAODC_01000 0.51 +1.0 182,529 + yacH MCAODC_01000 0.51 +2.7 182,530 - yacH MCAODC_01000 0.51 +1.5 182,530 - yacH MCAODC_01000 0.51 +0.4 182,530 - yacH MCAODC_01000 0.51 +0.8 182,530 - yacH MCAODC_01000 0.51 -0.2 182,576 + yacH MCAODC_01000 0.54 -1.4 182,576 + yacH MCAODC_01000 0.54 -1.2 182,577 - yacH MCAODC_01000 0.54 +0.5 182,619 - yacH MCAODC_01000 0.56 +1.2 182,637 - yacH MCAODC_01000 0.57 -0.1 182,643 - yacH MCAODC_01000 0.57 +2.7 182,649 - yacH MCAODC_01000 0.58 -0.0 182,673 + yacH MCAODC_01000 0.59 -0.8 182,679 - yacH MCAODC_01000 0.59 -0.8 182,679 - yacH MCAODC_01000 0.59 +2.1 182,691 + yacH MCAODC_01000 0.60 -0.9 182,880 - yacH MCAODC_01000 0.70 -2.2 182,895 + yacH MCAODC_01000 0.71 +0.7 182,895 + yacH MCAODC_01000 0.71 -0.8 183,167 + yacH MCAODC_01000 0.86 -1.0 183,167 + yacH MCAODC_01000 0.86 +1.5 183,344 + +0.2 183,344 + +0.2 183,443 - +0.2 183,503 + -1.3 183,504 - -0.9 183,504 - -1.8
Or see this region's nucleotide sequence