Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fha and tssJ overlap by 4 nucleotides tssJ and tssK are separated by 2 nucleotides
MCAODC_00400: fha - Type VI secretion system protein Fha, at 59,394 to 60,674
fha
MCAODC_00405: tssJ - Type VI secretion system protein TssJ, at 60,671 to 61,195
tssJ
MCAODC_00410: tssK - type VI secretion system baseplate subunit TssK, at 61,198 to 62,529
tssK
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.730 kb on - strand, within fha at 59.740 kb on - strand, within fha at 59.787 kb on - strand, within fha at 59.806 kb on + strand, within fha at 59.807 kb on - strand, within fha at 59.925 kb on - strand, within fha at 59.925 kb on - strand, within fha at 59.993 kb on + strand, within fha at 59.994 kb on - strand, within fha at 59.994 kb on - strand, within fha at 59.994 kb on - strand, within fha at 60.036 kb on + strand, within fha at 60.036 kb on + strand, within fha at 60.056 kb on + strand, within fha at 60.056 kb on + strand, within fha at 60.056 kb on + strand, within fha at 60.056 kb on + strand, within fha at 60.057 kb on - strand, within fha at 60.057 kb on - strand, within fha at 60.206 kb on - strand, within fha at 60.301 kb on - strand, within fha at 60.336 kb on - strand, within fha at 60.347 kb on - strand, within fha at 60.550 kb on - strand at 60.558 kb on + strand at 60.558 kb on + strand at 60.559 kb on - strand at 60.619 kb on - strand at 60.619 kb on - strand at 60.619 kb on - strand at 60.619 kb on - strand at 60.630 kb on + strand at 60.630 kb on + strand at 60.630 kb on + strand at 60.714 kb on + strand at 60.714 kb on + strand at 60.715 kb on - strand at 60.715 kb on - strand at 60.887 kb on + strand, within tssJ at 60.923 kb on + strand, within tssJ at 60.924 kb on - strand, within tssJ at 60.924 kb on - strand, within tssJ at 60.934 kb on - strand, within tssJ at 60.964 kb on + strand, within tssJ at 60.972 kb on - strand, within tssJ at 61.055 kb on - strand, within tssJ at 61.070 kb on + strand, within tssJ at 61.155 kb on + strand at 61.155 kb on + strand at 61.156 kb on - strand at 61.156 kb on - strand at 61.193 kb on + strand at 61.193 kb on + strand at 61.193 kb on + strand at 61.194 kb on - strand at 61.194 kb on - strand at 61.194 kb on - strand at 61.194 kb on - strand at 61.194 kb on - strand at 61.194 kb on - strand at 61.197 kb on + strand at 61.277 kb on - strand at 61.285 kb on + strand at 61.285 kb on + strand at 61.294 kb on - strand at 61.322 kb on + strand at 61.322 kb on + strand at 61.322 kb on + strand at 61.375 kb on - strand, within tssK at 61.375 kb on - strand, within tssK at 61.497 kb on + strand, within tssK at 61.568 kb on - strand, within tssK at 61.580 kb on - strand, within tssK at 61.657 kb on - strand, within tssK at 61.674 kb on + strand, within tssK at 61.675 kb on - strand, within tssK at 61.675 kb on - strand, within tssK at 61.684 kb on + strand, within tssK at 61.684 kb on + strand, within tssK at 61.685 kb on - strand, within tssK at 61.685 kb on - strand, within tssK at 61.686 kb on + strand, within tssK at 61.687 kb on - strand, within tssK at 61.689 kb on + strand, within tssK at 61.773 kb on + strand, within tssK at 61.773 kb on + strand, within tssK at 61.774 kb on - strand, within tssK at 61.786 kb on - strand, within tssK at 61.802 kb on - strand, within tssK at 61.814 kb on + strand, within tssK at 61.815 kb on - strand, within tssK at 61.858 kb on - strand, within tssK at 62.025 kb on + strand, within tssK at 62.026 kb on - strand, within tssK at 62.062 kb on + strand, within tssK at 62.062 kb on + strand, within tssK at 62.063 kb on - strand, within tssK at 62.063 kb on - strand, within tssK at 62.063 kb on - strand, within tssK at 62.063 kb on - strand, within tssK at 62.091 kb on + strand, within tssK at 62.091 kb on + strand, within tssK at 62.092 kb on - strand, within tssK at 62.132 kb on + strand, within tssK at 62.132 kb on + strand, within tssK at 62.133 kb on - strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 59,730 - fha MCAODC_00400 0.26 +0.7 59,740 - fha MCAODC_00400 0.27 +1.8 59,787 - fha MCAODC_00400 0.31 +0.1 59,806 + fha MCAODC_00400 0.32 -1.1 59,807 - fha MCAODC_00400 0.32 -1.4 59,925 - fha MCAODC_00400 0.41 -0.9 59,925 - fha MCAODC_00400 0.41 +0.1 59,993 + fha MCAODC_00400 0.47 +0.9 59,994 - fha MCAODC_00400 0.47 -0.2 59,994 - fha MCAODC_00400 0.47 -0.1 59,994 - fha MCAODC_00400 0.47 +0.2 60,036 + fha MCAODC_00400 0.50 -0.1 60,036 + fha MCAODC_00400 0.50 -0.1 60,056 + fha MCAODC_00400 0.52 -0.9 60,056 + fha MCAODC_00400 0.52 +0.6 60,056 + fha MCAODC_00400 0.52 -1.1 60,056 + fha MCAODC_00400 0.52 +0.2 60,057 - fha MCAODC_00400 0.52 +0.6 60,057 - fha MCAODC_00400 0.52 -0.1 60,206 - fha MCAODC_00400 0.63 +0.8 60,301 - fha MCAODC_00400 0.71 +1.6 60,336 - fha MCAODC_00400 0.74 +0.4 60,347 - fha MCAODC_00400 0.74 -1.0 60,550 - +1.1 60,558 + -2.0 60,558 + +0.1 60,559 - -0.4 60,619 - -2.4 60,619 - +0.7 60,619 - +0.2 60,619 - +1.3 60,630 + -0.1 60,630 + -0.1 60,630 + -0.1 60,714 + -0.1 60,714 + +0.7 60,715 - +1.1 60,715 - -1.6 60,887 + tssJ MCAODC_00405 0.41 +0.5 60,923 + tssJ MCAODC_00405 0.48 -0.2 60,924 - tssJ MCAODC_00405 0.48 -0.1 60,924 - tssJ MCAODC_00405 0.48 -0.7 60,934 - tssJ MCAODC_00405 0.50 -1.1 60,964 + tssJ MCAODC_00405 0.56 -0.4 60,972 - tssJ MCAODC_00405 0.57 +1.0 61,055 - tssJ MCAODC_00405 0.73 -1.7 61,070 + tssJ MCAODC_00405 0.76 -0.6 61,155 + -0.1 61,155 + -0.3 61,156 - +0.2 61,156 - +0.4 61,193 + +0.1 61,193 + -0.3 61,193 + -0.5 61,194 - -1.0 61,194 - +0.5 61,194 - +0.2 61,194 - +0.4 61,194 - -0.3 61,194 - +0.4 61,197 + +0.4 61,277 - +0.9 61,285 + +0.8 61,285 + +0.3 61,294 - -0.8 61,322 + -0.6 61,322 + -0.5 61,322 + +0.8 61,375 - tssK MCAODC_00410 0.13 -1.1 61,375 - tssK MCAODC_00410 0.13 +1.2 61,497 + tssK MCAODC_00410 0.22 -0.8 61,568 - tssK MCAODC_00410 0.28 -1.0 61,580 - tssK MCAODC_00410 0.29 +0.6 61,657 - tssK MCAODC_00410 0.34 -1.0 61,674 + tssK MCAODC_00410 0.36 +1.1 61,675 - tssK MCAODC_00410 0.36 -0.1 61,675 - tssK MCAODC_00410 0.36 +0.6 61,684 + tssK MCAODC_00410 0.36 +0.6 61,684 + tssK MCAODC_00410 0.36 +0.6 61,685 - tssK MCAODC_00410 0.37 -1.4 61,685 - tssK MCAODC_00410 0.37 +0.1 61,686 + tssK MCAODC_00410 0.37 +0.5 61,687 - tssK MCAODC_00410 0.37 -0.3 61,689 + tssK MCAODC_00410 0.37 -2.2 61,773 + tssK MCAODC_00410 0.43 +0.6 61,773 + tssK MCAODC_00410 0.43 +0.8 61,774 - tssK MCAODC_00410 0.43 +0.4 61,786 - tssK MCAODC_00410 0.44 -0.0 61,802 - tssK MCAODC_00410 0.45 +0.1 61,814 + tssK MCAODC_00410 0.46 -0.0 61,815 - tssK MCAODC_00410 0.46 -0.6 61,858 - tssK MCAODC_00410 0.50 -1.5 62,025 + tssK MCAODC_00410 0.62 -0.0 62,026 - tssK MCAODC_00410 0.62 -0.0 62,062 + tssK MCAODC_00410 0.65 -0.1 62,062 + tssK MCAODC_00410 0.65 -0.8 62,063 - tssK MCAODC_00410 0.65 +0.3 62,063 - tssK MCAODC_00410 0.65 +0.0 62,063 - tssK MCAODC_00410 0.65 +0.3 62,063 - tssK MCAODC_00410 0.65 +0.6 62,091 + tssK MCAODC_00410 0.67 +0.3 62,091 + tssK MCAODC_00410 0.67 -0.4 62,092 - tssK MCAODC_00410 0.67 +0.0 62,132 + tssK MCAODC_00410 0.70 -0.0 62,132 + tssK MCAODC_00410 0.70 -0.5 62,133 - tssK MCAODC_00410 0.70 +0.2
Or see this region's nucleotide sequence