Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22535

Experiment: Bas51

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas51
3,278,204	+	napG	HEPCGN_22525	0.82	+0.3
3,278,278	+				+0.7
3,278,278	+				-0.6
3,278,396	+				+0.9
3,278,477	-	napH	HEPCGN_22530	0.19	-0.3
3,278,485	-	napH	HEPCGN_22530	0.19	+0.3
3,278,585	+	napH	HEPCGN_22530	0.31	-0.5
3,278,589	+	napH	HEPCGN_22530	0.31	-0.7
3,278,590	-	napH	HEPCGN_22530	0.32	+0.1
3,278,602	+	napH	HEPCGN_22530	0.33	-0.1
3,278,732	-	napH	HEPCGN_22530	0.48	+0.1
3,278,883	-	napH	HEPCGN_22530	0.66	+0.1
3,279,003	+	napH	HEPCGN_22530	0.79	+0.6
3,279,004	-	napH	HEPCGN_22530	0.80	+0.7
3,279,041	+	napH	HEPCGN_22530	0.84	-0.2
3,279,041	+	napH	HEPCGN_22530	0.84	-1.9
3,279,041	+	napH	HEPCGN_22530	0.84	+0.3
3,279,137	+				-0.7
3,279,137	+				+0.5
3,279,138	-				+0.1
3,279,138	-				-1.0
3,279,138	-				+0.7
3,279,138	-				+0.3
3,279,146	+				+0.5
3,279,147	-				+0.7
3,279,150	+				-0.0
3,279,238	+	napH	HEPCGN_22535	0.14	+0.4
3,279,354	+	napH	HEPCGN_22535	0.39	+0.1
3,279,355	-	napH	HEPCGN_22535	0.40	+1.5
3,279,477	-	napH	HEPCGN_22535	0.67	+0.8
3,279,477	-	napH	HEPCGN_22535	0.67	+0.1
3,279,625	-				+0.3
3,279,632	+				+0.1
3,279,633	-				+0.5
3,279,653	+				+0.3
3,279,669	-				+0.0
3,279,693	-				+0.4
3,279,809	+	napC	HEPCGN_22540	0.29	-0.2
3,279,810	-	napC	HEPCGN_22540	0.29	-0.1
3,279,827	+	napC	HEPCGN_22540	0.32	+0.1
3,279,827	+	napC	HEPCGN_22540	0.32	+0.1
3,279,837	+	napC	HEPCGN_22540	0.33	+0.1
3,279,838	-	napC	HEPCGN_22540	0.33	+0.6
3,279,846	+	napC	HEPCGN_22540	0.35	+0.3
3,279,846	+	napC	HEPCGN_22540	0.35	+0.0
3,279,847	-	napC	HEPCGN_22540	0.35	+1.0
3,279,865	-	napC	HEPCGN_22540	0.38	+2.6
3,279,865	-	napC	HEPCGN_22540	0.38	+0.3
3,279,957	-	napC	HEPCGN_22540	0.53	+0.2
3,280,062	-	napC	HEPCGN_22540	0.71	+0.1
3,280,099	-	napC	HEPCGN_22540	0.77	-0.5
3,280,100	+	napC	HEPCGN_22540	0.77	-0.8
3,280,100	+	napC	HEPCGN_22540	0.77	+0.2
3,280,173	-	napC	HEPCGN_22540	0.89	+1.3
3,280,276	+				-0.8
3,280,277	-				-0.4
3,280,277	-				+0.1
3,280,303	+				-0.6
3,280,303	+				+1.0
3,280,470	+	ccmA	HEPCGN_22545	0.34	-0.0
3,280,470	+	ccmA	HEPCGN_22545	0.34	-0.5
3,280,470	+	ccmA	HEPCGN_22545	0.34	+0.7