Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19085

Experiment: Bas51

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas51
2,567,238	+	iap	HEPCGN_19070	0.57	+1.0
2,567,239	-	iap	HEPCGN_19070	0.57	-0.3
2,567,262	+	iap	HEPCGN_19070	0.59	+0.2
2,567,268	-	iap	HEPCGN_19070	0.59	+0.2
2,567,430	+	iap	HEPCGN_19070	0.75	+0.1
2,567,430	+	iap	HEPCGN_19070	0.75	-0.5
2,567,431	-	iap	HEPCGN_19070	0.75	-0.1
2,567,506	-	iap	HEPCGN_19070	0.82	-1.1
2,567,515	+	iap	HEPCGN_19070	0.83	+0.6
2,567,570	+	iap	HEPCGN_19070	0.89	-0.1
2,567,570	+	iap	HEPCGN_19070	0.89	+0.8
2,567,598	+				-0.5
2,567,618	+				-1.3
2,567,619	-				-0.1
2,567,619	-				-0.5
2,567,640	+				-0.3
2,567,704	+				+0.2
2,567,923	-		HEPCGN_19075	0.71	-0.7
2,567,936	-		HEPCGN_19075	0.79	+0.6
2,567,936	-		HEPCGN_19075	0.79	-0.4
2,567,955	-				-0.5
2,567,955	-				+0.8
2,568,037	+				+0.4
2,568,120	+				+0.9
2,568,120	+				+0.3
2,568,121	-				+0.1
2,568,122	+				-1.5
2,568,142	+				+0.1
2,568,142	+				+0.7
2,568,143	-				+0.4
2,568,143	-				+0.3
2,568,229	+				+0.9
2,568,230	-				-0.3
2,568,234	-				+1.4
2,568,319	-	cysH	HEPCGN_19085	0.12	-1.1
2,568,319	-	cysH	HEPCGN_19085	0.12	-1.6
2,568,400	-	cysH	HEPCGN_19085	0.23	+0.5
2,568,436	-	cysH	HEPCGN_19085	0.28	-0.4
2,568,820	+	cysH	HEPCGN_19085	0.80	+0.0
2,568,820	+	cysH	HEPCGN_19085	0.80	-0.2
2,568,824	+	cysH	HEPCGN_19085	0.81	-0.9
2,568,949	+				-0.5
2,568,949	+				-0.7
2,568,967	-				-0.0
2,568,967	-				-1.7
2,569,021	+				-0.3
2,569,100	-				+0.4
2,569,198	+				-0.5
2,569,200	+				+0.1
2,569,200	+				-1.6
2,569,214	-	cysI	HEPCGN_19090	0.10	-0.3
2,569,340	-	cysI	HEPCGN_19090	0.18	+0.7
2,569,340	-	cysI	HEPCGN_19090	0.18	-0.3
2,569,375	+	cysI	HEPCGN_19090	0.20	-0.1
2,569,390	+	cysI	HEPCGN_19090	0.20	-0.7
2,569,726	+	cysI	HEPCGN_19090	0.40	+0.2
2,569,743	+	cysI	HEPCGN_19090	0.41	+0.2
2,569,910	-	cysI	HEPCGN_19090	0.51	-1.6
2,569,926	+	cysI	HEPCGN_19090	0.52	+0.4