Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15555

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlivJ and panM are separated by 187 nucleotidespanM and livK are separated by 423 nucleotides HEPCGN_15550: livJ - branched chain amino acid ABC transporter substrate-binding protein LivJ, at 1,872,397 to 1,873,500 livJ HEPCGN_15555: panM - aspartate 1-decarboxylase autocleavage activator PanM, at 1,873,688 to 1,874,071 panM HEPCGN_15560: livK - high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK, at 1,874,495 to 1,875,604 livK Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -1 0 1 2at 1872.730 kb on + strand, within livJat 1872.730 kb on + strand, within livJat 1872.859 kb on - strand, within livJat 1872.891 kb on + strand, within livJat 1872.914 kb on - strand, within livJat 1872.967 kb on - strand, within livJat 1872.967 kb on - strand, within livJat 1873.057 kb on + strand, within livJat 1873.307 kb on - strand, within livJat 1873.368 kb on + strand, within livJat 1873.368 kb on + strand, within livJat 1873.373 kb on - strand, within livJat 1873.395 kb on + strandat 1873.395 kb on + strandat 1873.414 kb on - strandat 1873.538 kb on - strandat 1873.632 kb on - strandat 1873.953 kb on + strand, within panMat 1873.954 kb on - strand, within panMat 1874.181 kb on - strandat 1874.181 kb on - strandat 1874.193 kb on - strandat 1874.193 kb on - strandat 1874.405 kb on + strandat 1874.495 kb on - strandat 1874.558 kb on - strandat 1874.569 kb on + strandat 1874.572 kb on + strandat 1874.663 kb on - strand, within livKat 1874.709 kb on - strand, within livKat 1874.773 kb on + strand, within livKat 1874.773 kb on + strand, within livKat 1874.773 kb on + strand, within livKat 1874.777 kb on + strand, within livKat 1874.777 kb on + strand, within livKat 1874.824 kb on + strand, within livKat 1874.825 kb on - strand, within livKat 1874.828 kb on + strand, within livKat 1874.828 kb on + strand, within livKat 1874.828 kb on + strand, within livKat 1874.829 kb on - strand, within livKat 1874.842 kb on + strand, within livKat 1874.900 kb on + strand, within livKat 1874.901 kb on - strand, within livKat 1874.901 kb on - strand, within livKat 1874.901 kb on - strand, within livKat 1874.901 kb on - strand, within livKat 1874.912 kb on - strand, within livKat 1874.954 kb on + strand, within livKat 1874.955 kb on - strand, within livK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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1,872,730 + livJ HEPCGN_15550 0.30 -1.0
1,872,730 + livJ HEPCGN_15550 0.30 -0.6
1,872,859 - livJ HEPCGN_15550 0.42 +0.2
1,872,891 + livJ HEPCGN_15550 0.45 -0.3
1,872,914 - livJ HEPCGN_15550 0.47 +2.0
1,872,967 - livJ HEPCGN_15550 0.52 -0.9
1,872,967 - livJ HEPCGN_15550 0.52 -0.1
1,873,057 + livJ HEPCGN_15550 0.60 -0.3
1,873,307 - livJ HEPCGN_15550 0.82 +0.2
1,873,368 + livJ HEPCGN_15550 0.88 +0.2
1,873,368 + livJ HEPCGN_15550 0.88 -0.2
1,873,373 - livJ HEPCGN_15550 0.88 -0.2
1,873,395 + -0.2
1,873,395 + +0.5
1,873,414 - +0.3
1,873,538 - -0.3
1,873,632 - +0.3
1,873,953 + panM HEPCGN_15555 0.69 +0.1
1,873,954 - panM HEPCGN_15555 0.69 +0.1
1,874,181 - +0.1
1,874,181 - +0.2
1,874,193 - -0.2
1,874,193 - +0.1
1,874,405 + -0.3
1,874,495 - -0.4
1,874,558 - -0.3
1,874,569 + +0.0
1,874,572 + -1.2
1,874,663 - livK HEPCGN_15560 0.15 +0.2
1,874,709 - livK HEPCGN_15560 0.19 -0.5
1,874,773 + livK HEPCGN_15560 0.25 -0.5
1,874,773 + livK HEPCGN_15560 0.25 -0.1
1,874,773 + livK HEPCGN_15560 0.25 -0.5
1,874,777 + livK HEPCGN_15560 0.25 -0.3
1,874,777 + livK HEPCGN_15560 0.25 +0.1
1,874,824 + livK HEPCGN_15560 0.30 +0.4
1,874,825 - livK HEPCGN_15560 0.30 -0.5
1,874,828 + livK HEPCGN_15560 0.30 +0.7
1,874,828 + livK HEPCGN_15560 0.30 +0.7
1,874,828 + livK HEPCGN_15560 0.30 +0.3
1,874,829 - livK HEPCGN_15560 0.30 +0.5
1,874,842 + livK HEPCGN_15560 0.31 +0.0
1,874,900 + livK HEPCGN_15560 0.36 -0.4
1,874,901 - livK HEPCGN_15560 0.37 -0.2
1,874,901 - livK HEPCGN_15560 0.37 +0.3
1,874,901 - livK HEPCGN_15560 0.37 -0.4
1,874,901 - livK HEPCGN_15560 0.37 -0.1
1,874,912 - livK HEPCGN_15560 0.38 +0.2
1,874,954 + livK HEPCGN_15560 0.41 -0.5
1,874,955 - livK HEPCGN_15560 0.41 +0.5

Or see this region's nucleotide sequence