Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10700

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_10690 and HEPCGN_10695 are separated by 361 nucleotidesHEPCGN_10695 and HEPCGN_10700 are separated by 336 nucleotidesHEPCGN_10700 and HEPCGN_10705 are separated by 49 nucleotidesHEPCGN_10705 and HEPCGN_10710 are separated by 11 nucleotides HEPCGN_10690: HEPCGN_10690 - integrase, at 876,835 to 878,097 _10690 HEPCGN_10695: HEPCGN_10695 - peptide ABC transporter substrate-binding protein, at 878,459 to 878,623 _10695 HEPCGN_10700: HEPCGN_10700 - lactate permease, at 878,960 to 880,516 _10700 HEPCGN_10705: HEPCGN_10705 - Cysteine-rich domain-containing protein, at 880,566 to 881,285 _10705 HEPCGN_10710: HEPCGN_10710 - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 881,297 to 882,712 _10710 Position (kb) 878 879 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 877.966 kb on + strand, within HEPCGN_10690at 877.974 kb on + strandat 877.975 kb on - strandat 878.010 kb on - strandat 878.053 kb on - strandat 878.297 kb on + strandat 878.400 kb on + strandat 878.454 kb on + strandat 878.454 kb on + strandat 878.499 kb on - strand, within HEPCGN_10695at 878.516 kb on + strand, within HEPCGN_10695at 878.516 kb on + strand, within HEPCGN_10695at 878.519 kb on + strand, within HEPCGN_10695at 878.519 kb on + strand, within HEPCGN_10695at 878.569 kb on + strand, within HEPCGN_10695at 878.592 kb on - strand, within HEPCGN_10695at 878.597 kb on + strand, within HEPCGN_10695at 878.597 kb on + strand, within HEPCGN_10695at 878.602 kb on + strand, within HEPCGN_10695at 878.602 kb on + strand, within HEPCGN_10695at 878.615 kb on - strandat 878.697 kb on + strandat 878.878 kb on - strandat 878.993 kb on - strandat 878.993 kb on - strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.048 kb on - strandat 879.048 kb on - strandat 879.058 kb on + strandat 879.058 kb on + strandat 879.078 kb on + strandat 879.079 kb on - strandat 879.112 kb on + strandat 879.112 kb on + strandat 879.113 kb on - strandat 879.135 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.198 kb on - strand, within HEPCGN_10700at 879.266 kb on - strand, within HEPCGN_10700at 879.272 kb on - strand, within HEPCGN_10700at 879.286 kb on + strand, within HEPCGN_10700at 879.286 kb on + strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.289 kb on - strand, within HEPCGN_10700at 879.330 kb on - strand, within HEPCGN_10700at 879.334 kb on + strand, within HEPCGN_10700at 879.361 kb on - strand, within HEPCGN_10700at 879.418 kb on + strand, within HEPCGN_10700at 879.419 kb on - strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.450 kb on + strand, within HEPCGN_10700at 879.450 kb on + strand, within HEPCGN_10700at 879.451 kb on - strand, within HEPCGN_10700at 879.451 kb on - strand, within HEPCGN_10700at 879.589 kb on - strand, within HEPCGN_10700at 879.607 kb on + strand, within HEPCGN_10700at 879.637 kb on - strand, within HEPCGN_10700at 879.715 kb on - strand, within HEPCGN_10700at 879.764 kb on - strand, within HEPCGN_10700at 879.816 kb on + strand, within HEPCGN_10700at 879.836 kb on + strand, within HEPCGN_10700at 879.836 kb on + strand, within HEPCGN_10700at 879.837 kb on - strand, within HEPCGN_10700at 879.888 kb on + strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.071 kb on + strand, within HEPCGN_10700at 880.093 kb on + strand, within HEPCGN_10700at 880.093 kb on + strand, within HEPCGN_10700at 880.250 kb on - strand, within HEPCGN_10700at 880.385 kb on - strandat 880.425 kb on + strandat 880.425 kb on + strandat 880.425 kb on + strandat 880.449 kb on - strandat 880.460 kb on + strandat 880.460 kb on + strandat 880.461 kb on - strandat 880.462 kb on + strandat 880.469 kb on - strandat 880.469 kb on - strandat 880.474 kb on - strandat 880.486 kb on - strandat 880.496 kb on + strandat 880.575 kb on - strandat 880.607 kb on + strandat 880.608 kb on - strandat 880.639 kb on + strand, within HEPCGN_10705at 880.753 kb on + strand, within HEPCGN_10705at 880.810 kb on - strand, within HEPCGN_10705at 880.810 kb on - strand, within HEPCGN_10705at 880.824 kb on + strand, within HEPCGN_10705at 880.913 kb on + strand, within HEPCGN_10705at 880.950 kb on - strand, within HEPCGN_10705at 880.965 kb on + strand, within HEPCGN_10705at 880.966 kb on - strand, within HEPCGN_10705at 880.966 kb on - strand, within HEPCGN_10705at 881.153 kb on + strand, within HEPCGN_10705at 881.154 kb on - strand, within HEPCGN_10705at 881.154 kb on - strand, within HEPCGN_10705at 881.156 kb on + strand, within HEPCGN_10705at 881.165 kb on + strand, within HEPCGN_10705at 881.166 kb on - strand, within HEPCGN_10705at 881.246 kb on - strandat 881.259 kb on - strandat 881.318 kb on - strandat 881.327 kb on - strandat 881.404 kb on + strandat 881.501 kb on + strand, within HEPCGN_10710at 881.502 kb on - strand, within HEPCGN_10710at 881.502 kb on - strand, within HEPCGN_10710at 881.507 kb on + strand, within HEPCGN_10710at 881.508 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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877,966 + HEPCGN_10690 0.90 +0.7
877,974 + -0.2
877,975 - -0.2
878,010 - +0.2
878,053 - -0.0
878,297 + +0.8
878,400 + +1.1
878,454 + -0.6
878,454 + -0.0
878,499 - HEPCGN_10695 0.24 -0.5
878,516 + HEPCGN_10695 0.35 +0.2
878,516 + HEPCGN_10695 0.35 -0.9
878,519 + HEPCGN_10695 0.36 +1.0
878,519 + HEPCGN_10695 0.36 -0.5
878,569 + HEPCGN_10695 0.67 -1.9
878,592 - HEPCGN_10695 0.81 -0.5
878,597 + HEPCGN_10695 0.84 +1.2
878,597 + HEPCGN_10695 0.84 +0.8
878,602 + HEPCGN_10695 0.87 +0.5
878,602 + HEPCGN_10695 0.87 +0.7
878,615 - -2.5
878,697 + -0.5
878,878 - +0.2
878,993 - +0.7
878,993 - +0.3
879,047 + +0.4
879,047 + +2.1
879,047 + -0.9
879,047 + -0.6
879,048 - +0.6
879,048 - +0.1
879,058 + +0.4
879,058 + +0.5
879,078 + +0.1
879,079 - +0.3
879,112 + +0.1
879,112 + -0.1
879,113 - -0.6
879,135 + HEPCGN_10700 0.11 +0.4
879,191 + HEPCGN_10700 0.15 +0.6
879,191 + HEPCGN_10700 0.15 +0.3
879,191 + HEPCGN_10700 0.15 +0.5
879,192 - HEPCGN_10700 0.15 +0.4
879,192 - HEPCGN_10700 0.15 -0.2
879,192 - HEPCGN_10700 0.15 +0.5
879,198 - HEPCGN_10700 0.15 +0.3
879,266 - HEPCGN_10700 0.20 +0.0
879,272 - HEPCGN_10700 0.20 +0.5
879,286 + HEPCGN_10700 0.21 +0.9
879,286 + HEPCGN_10700 0.21 -0.8
879,287 - HEPCGN_10700 0.21 -0.5
879,287 - HEPCGN_10700 0.21 +0.6
879,287 - HEPCGN_10700 0.21 +1.0
879,289 - HEPCGN_10700 0.21 -0.8
879,330 - HEPCGN_10700 0.24 +0.5
879,334 + HEPCGN_10700 0.24 +0.0
879,361 - HEPCGN_10700 0.26 +1.5
879,418 + HEPCGN_10700 0.29 +0.6
879,419 - HEPCGN_10700 0.29 -0.3
879,444 + HEPCGN_10700 0.31 +0.6
879,444 + HEPCGN_10700 0.31 +0.4
879,444 + HEPCGN_10700 0.31 -0.1
879,450 + HEPCGN_10700 0.31 +0.7
879,450 + HEPCGN_10700 0.31 -3.1
879,451 - HEPCGN_10700 0.32 +0.8
879,451 - HEPCGN_10700 0.32 +0.2
879,589 - HEPCGN_10700 0.40 +0.6
879,607 + HEPCGN_10700 0.42 +0.2
879,637 - HEPCGN_10700 0.43 +0.1
879,715 - HEPCGN_10700 0.48 +1.1
879,764 - HEPCGN_10700 0.52 -1.1
879,816 + HEPCGN_10700 0.55 +0.3
879,836 + HEPCGN_10700 0.56 +0.8
879,836 + HEPCGN_10700 0.56 -0.0
879,837 - HEPCGN_10700 0.56 -0.1
879,888 + HEPCGN_10700 0.60 +0.3
880,051 - HEPCGN_10700 0.70 -0.0
880,051 - HEPCGN_10700 0.70 +0.5
880,051 - HEPCGN_10700 0.70 +0.3
880,051 - HEPCGN_10700 0.70 -0.3
880,051 - HEPCGN_10700 0.70 +0.4
880,071 + HEPCGN_10700 0.71 +0.7
880,093 + HEPCGN_10700 0.73 +0.4
880,093 + HEPCGN_10700 0.73 -0.5
880,250 - HEPCGN_10700 0.83 +0.8
880,385 - +0.2
880,425 + -0.9
880,425 + +0.7
880,425 + +0.4
880,449 - +0.6
880,460 + +0.2
880,460 + +0.4
880,461 - +0.0
880,462 + +0.2
880,469 - +0.1
880,469 - +0.1
880,474 - +0.6
880,486 - +0.2
880,496 + +0.2
880,575 - -0.8
880,607 + +0.4
880,608 - +0.2
880,639 + HEPCGN_10705 0.10 +0.9
880,753 + HEPCGN_10705 0.26 +0.0
880,810 - HEPCGN_10705 0.34 -0.3
880,810 - HEPCGN_10705 0.34 -0.1
880,824 + HEPCGN_10705 0.36 -0.1
880,913 + HEPCGN_10705 0.48 -1.8
880,950 - HEPCGN_10705 0.53 +0.3
880,965 + HEPCGN_10705 0.55 -0.4
880,966 - HEPCGN_10705 0.56 -0.7
880,966 - HEPCGN_10705 0.56 -0.7
881,153 + HEPCGN_10705 0.82 -0.7
881,154 - HEPCGN_10705 0.82 +0.1
881,154 - HEPCGN_10705 0.82 +0.8
881,156 + HEPCGN_10705 0.82 +0.1
881,165 + HEPCGN_10705 0.83 +0.4
881,166 - HEPCGN_10705 0.83 +0.6
881,246 - -0.2
881,259 - -0.6
881,318 - -0.3
881,327 - -0.0
881,404 + +0.8
881,501 + HEPCGN_10710 0.14 +0.5
881,502 - HEPCGN_10710 0.14 -0.1
881,502 - HEPCGN_10710 0.14 +0.0
881,507 + HEPCGN_10710 0.15 +1.1
881,508 - HEPCGN_10710 0.15 +0.1
881,515 - HEPCGN_10710 0.15 -0.9
881,515 - HEPCGN_10710 0.15 +0.7
881,515 - HEPCGN_10710 0.15 -1.5
881,515 - HEPCGN_10710 0.15 +0.2

Or see this region's nucleotide sequence