Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10265

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntytfF and ytfE are separated by 107 nucleotidesytfE and HEPCGN_10265 are separated by 44 nucleotidesHEPCGN_10265 and HEPCGN_10270 are separated by 32 nucleotides HEPCGN_10255: ytfF - Inner membrane protein YtfF, at 796,321 to 797,286 ytfF HEPCGN_10260: ytfE - iron-sulfur cluster repair protein YtfE, at 797,394 to 798,056 ytfE HEPCGN_10265: HEPCGN_10265 - DKNYY family, at 798,101 to 799,594 _10265 HEPCGN_10270: HEPCGN_10270 - Lipoprotein, at 799,627 to 800,784 _10270 Position (kb) 798 799 800Strain fitness (log2 ratio) -3 -2 -1 0 1at 797.152 kb on + strand, within ytfFat 797.303 kb on + strandat 797.322 kb on + strandat 797.323 kb on - strandat 797.323 kb on - strandat 797.331 kb on + strandat 797.332 kb on - strandat 797.417 kb on - strandat 797.466 kb on + strand, within ytfEat 797.466 kb on + strand, within ytfEat 797.467 kb on - strand, within ytfEat 797.467 kb on - strand, within ytfEat 797.467 kb on - strand, within ytfEat 797.467 kb on - strand, within ytfEat 797.479 kb on - strand, within ytfEat 797.631 kb on - strand, within ytfEat 797.746 kb on - strand, within ytfEat 797.780 kb on + strand, within ytfEat 797.964 kb on + strand, within ytfEat 797.964 kb on + strand, within ytfEat 797.964 kb on + strand, within ytfEat 797.965 kb on - strand, within ytfEat 797.965 kb on - strand, within ytfEat 798.099 kb on - strandat 798.132 kb on + strandat 798.141 kb on + strandat 798.142 kb on - strandat 798.145 kb on + strandat 798.146 kb on - strandat 798.175 kb on + strandat 798.252 kb on + strand, within HEPCGN_10265at 798.252 kb on + strand, within HEPCGN_10265at 798.253 kb on - strand, within HEPCGN_10265at 798.258 kb on + strand, within HEPCGN_10265at 798.259 kb on - strand, within HEPCGN_10265at 798.259 kb on - strand, within HEPCGN_10265at 798.370 kb on + strand, within HEPCGN_10265at 798.371 kb on - strand, within HEPCGN_10265at 798.729 kb on - strand, within HEPCGN_10265at 798.739 kb on + strand, within HEPCGN_10265at 798.934 kb on + strand, within HEPCGN_10265at 799.156 kb on - strand, within HEPCGN_10265at 799.314 kb on + strand, within HEPCGN_10265at 799.369 kb on - strand, within HEPCGN_10265at 799.477 kb on - strandat 799.523 kb on + strandat 799.590 kb on - strandat 799.624 kb on - strandat 799.632 kb on + strandat 799.691 kb on - strandat 799.695 kb on + strandat 799.695 kb on + strandat 799.777 kb on + strand, within HEPCGN_10270at 799.778 kb on - strand, within HEPCGN_10270at 799.780 kb on - strand, within HEPCGN_10270at 799.793 kb on - strand, within HEPCGN_10270at 799.890 kb on - strand, within HEPCGN_10270at 799.890 kb on - strand, within HEPCGN_10270at 799.902 kb on + strand, within HEPCGN_10270at 800.072 kb on + strand, within HEPCGN_10270at 800.105 kb on - strand, within HEPCGN_10270at 800.172 kb on + strand, within HEPCGN_10270at 800.268 kb on + strand, within HEPCGN_10270at 800.281 kb on - strand, within HEPCGN_10270at 800.331 kb on + strand, within HEPCGN_10270at 800.331 kb on + strand, within HEPCGN_10270at 800.353 kb on - strand, within HEPCGN_10270at 800.353 kb on - strand, within HEPCGN_10270at 800.386 kb on - strand, within HEPCGN_10270at 800.442 kb on + strand, within HEPCGN_10270at 800.442 kb on + strand, within HEPCGN_10270at 800.443 kb on - strand, within HEPCGN_10270at 800.443 kb on - strand, within HEPCGN_10270at 800.443 kb on - strand, within HEPCGN_10270at 800.443 kb on - strand, within HEPCGN_10270

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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797,152 + ytfF HEPCGN_10255 0.86 +0.9
797,303 + +0.2
797,322 + -0.1
797,323 - +0.3
797,323 - -0.1
797,331 + -0.0
797,332 - +0.0
797,417 - +0.7
797,466 + ytfE HEPCGN_10260 0.11 +0.5
797,466 + ytfE HEPCGN_10260 0.11 -0.3
797,467 - ytfE HEPCGN_10260 0.11 -0.1
797,467 - ytfE HEPCGN_10260 0.11 -0.2
797,467 - ytfE HEPCGN_10260 0.11 +0.1
797,467 - ytfE HEPCGN_10260 0.11 +0.1
797,479 - ytfE HEPCGN_10260 0.13 +0.1
797,631 - ytfE HEPCGN_10260 0.36 +0.5
797,746 - ytfE HEPCGN_10260 0.53 +0.1
797,780 + ytfE HEPCGN_10260 0.58 -0.0
797,964 + ytfE HEPCGN_10260 0.86 +0.3
797,964 + ytfE HEPCGN_10260 0.86 +0.0
797,964 + ytfE HEPCGN_10260 0.86 -3.0
797,965 - ytfE HEPCGN_10260 0.86 +0.6
797,965 - ytfE HEPCGN_10260 0.86 +0.3
798,099 - +0.1
798,132 + -0.1
798,141 + +0.3
798,142 - -0.1
798,145 + +0.2
798,146 - -0.8
798,175 + -0.2
798,252 + HEPCGN_10265 0.10 -0.0
798,252 + HEPCGN_10265 0.10 +0.5
798,253 - HEPCGN_10265 0.10 +0.1
798,258 + HEPCGN_10265 0.11 -1.0
798,259 - HEPCGN_10265 0.11 -0.0
798,259 - HEPCGN_10265 0.11 -0.9
798,370 + HEPCGN_10265 0.18 +0.6
798,371 - HEPCGN_10265 0.18 +0.3
798,729 - HEPCGN_10265 0.42 +0.9
798,739 + HEPCGN_10265 0.43 -0.2
798,934 + HEPCGN_10265 0.56 +0.1
799,156 - HEPCGN_10265 0.71 +0.9
799,314 + HEPCGN_10265 0.81 +0.1
799,369 - HEPCGN_10265 0.85 +0.4
799,477 - +0.6
799,523 + +0.3
799,590 - +0.1
799,624 - -0.5
799,632 + +0.3
799,691 - +0.1
799,695 + +0.4
799,695 + +0.1
799,777 + HEPCGN_10270 0.13 -0.3
799,778 - HEPCGN_10270 0.13 +0.6
799,780 - HEPCGN_10270 0.13 +0.7
799,793 - HEPCGN_10270 0.14 +0.3
799,890 - HEPCGN_10270 0.23 +0.4
799,890 - HEPCGN_10270 0.23 -0.7
799,902 + HEPCGN_10270 0.24 +0.1
800,072 + HEPCGN_10270 0.38 +0.3
800,105 - HEPCGN_10270 0.41 +0.2
800,172 + HEPCGN_10270 0.47 +0.6
800,268 + HEPCGN_10270 0.55 +0.2
800,281 - HEPCGN_10270 0.56 -0.3
800,331 + HEPCGN_10270 0.61 -0.9
800,331 + HEPCGN_10270 0.61 -0.5
800,353 - HEPCGN_10270 0.63 +0.9
800,353 - HEPCGN_10270 0.63 -0.3
800,386 - HEPCGN_10270 0.66 +0.2
800,442 + HEPCGN_10270 0.70 +0.3
800,442 + HEPCGN_10270 0.70 -2.8
800,443 - HEPCGN_10270 0.70 -0.5
800,443 - HEPCGN_10270 0.70 +0.1
800,443 - HEPCGN_10270 0.70 -0.5
800,443 - HEPCGN_10270 0.70 +0.1

Or see this region's nucleotide sequence