Strain Fitness in Escherichia coli ECOR38 around HEPCGN_07095

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntribD and nrdR are separated by 3 nucleotidesnrdR and HEPCGN_07090 are separated by 150 nucleotidesHEPCGN_07090 and HEPCGN_07095 overlap by 16 nucleotidesHEPCGN_07095 and HEPCGN_07100 are separated by 152 nucleotides HEPCGN_07080: ribD - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 150,828 to 151,931 ribD HEPCGN_07085: nrdR - transcriptional regulator NrdR, at 151,935 to 152,384 nrdR HEPCGN_07090: HEPCGN_07090 - hypothetical protein, at 152,535 to 152,723 _07090 HEPCGN_07095: HEPCGN_07095 - RNA-guided endonuclease TnpB family protein, at 152,708 to 153,514 _07095 HEPCGN_07100: HEPCGN_07100 - Putative virulence protein, at 153,667 to 153,855 _07100 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1at 151.977 kb on - strandat 152.015 kb on - strand, within nrdRat 152.025 kb on - strand, within nrdRat 152.188 kb on - strand, within nrdRat 152.283 kb on - strand, within nrdRat 152.283 kb on - strand, within nrdRat 152.352 kb on - strandat 152.438 kb on + strandat 152.439 kb on - strandat 152.466 kb on - strandat 152.491 kb on + strandat 152.534 kb on + strandat 152.535 kb on - strandat 152.535 kb on - strandat 152.540 kb on + strandat 152.540 kb on + strandat 152.540 kb on + strandat 152.541 kb on - strandat 152.541 kb on - strandat 152.543 kb on + strandat 152.843 kb on - strand, within HEPCGN_07095at 152.852 kb on + strand, within HEPCGN_07095at 152.852 kb on + strand, within HEPCGN_07095at 152.932 kb on - strand, within HEPCGN_07095at 152.932 kb on - strand, within HEPCGN_07095at 153.774 kb on + strand, within HEPCGN_07100at 154.370 kb on + strandat 154.399 kb on - strandat 154.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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151,977 - +0.7
152,015 - nrdR HEPCGN_07085 0.18 -1.9
152,025 - nrdR HEPCGN_07085 0.20 +0.3
152,188 - nrdR HEPCGN_07085 0.56 +0.3
152,283 - nrdR HEPCGN_07085 0.77 -1.1
152,283 - nrdR HEPCGN_07085 0.77 -0.8
152,352 - -0.8
152,438 + -1.1
152,439 - +0.2
152,466 - +1.4
152,491 + -0.1
152,534 + +1.4
152,535 - +1.1
152,535 - +0.5
152,540 + +0.3
152,540 + +0.1
152,540 + +0.9
152,541 - -0.6
152,541 - +0.1
152,543 + +0.8
152,843 - HEPCGN_07095 0.17 -0.1
152,852 + HEPCGN_07095 0.18 +0.0
152,852 + HEPCGN_07095 0.18 -0.0
152,932 - HEPCGN_07095 0.28 +0.1
152,932 - HEPCGN_07095 0.28 +0.3
153,774 + HEPCGN_07100 0.57 -0.1
154,370 + +1.0
154,399 - -0.3
154,474 - +0.4

Or see this region's nucleotide sequence