Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03735

Experiment: Rhamnogalacturonan I from potato pectic fiber (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03725 and HUW76_03730 are separated by 69 nucleotidesHUW76_03730 and HUW76_03735 are separated by 262 nucleotidesHUW76_03735 and HUW76_03740 are separated by 191 nucleotides HUW76_03725: HUW76_03725 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 743,070 to 743,648 _03725 HUW76_03730: HUW76_03730 - hypothetical protein, at 743,718 to 743,936 _03730 HUW76_03735: HUW76_03735 - ATP-binding cassette domain-containing protein, at 744,199 to 745,818 _03735 HUW76_03740: HUW76_03740 - SDR family oxidoreductase, at 746,010 to 746,939 _03740 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 743.263 kb on + strand, within HUW76_03725at 743.303 kb on + strand, within HUW76_03725at 743.350 kb on - strand, within HUW76_03725at 743.413 kb on + strand, within HUW76_03725at 743.458 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.468 kb on + strand, within HUW76_03725at 743.476 kb on - strand, within HUW76_03725at 743.476 kb on - strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.478 kb on + strand, within HUW76_03725at 743.486 kb on - strand, within HUW76_03725at 743.486 kb on - strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.497 kb on + strand, within HUW76_03725at 743.517 kb on + strand, within HUW76_03725at 743.517 kb on + strand, within HUW76_03725at 743.517 kb on - strand, within HUW76_03725at 743.529 kb on + strand, within HUW76_03725at 743.561 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.579 kb on - strand, within HUW76_03725at 743.621 kb on + strandat 743.648 kb on + strandat 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.745 kb on + strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.753 kb on - strand, within HUW76_03730at 743.769 kb on + strand, within HUW76_03730at 743.853 kb on - strand, within HUW76_03730at 743.853 kb on - strand, within HUW76_03730at 743.887 kb on - strand, within HUW76_03730at 743.887 kb on - strand, within HUW76_03730at 744.143 kb on + strandat 744.268 kb on - strandat 744.279 kb on - strandat 744.446 kb on - strand, within HUW76_03735at 744.446 kb on - strand, within HUW76_03735at 744.462 kb on + strand, within HUW76_03735at 744.471 kb on + strand, within HUW76_03735at 744.484 kb on - strand, within HUW76_03735at 744.491 kb on + strand, within HUW76_03735at 744.499 kb on - strand, within HUW76_03735at 744.562 kb on + strand, within HUW76_03735at 744.570 kb on - strand, within HUW76_03735at 744.570 kb on - strand, within HUW76_03735at 744.587 kb on + strand, within HUW76_03735at 744.587 kb on + strand, within HUW76_03735at 744.587 kb on - strand, within HUW76_03735at 744.592 kb on - strand, within HUW76_03735at 744.594 kb on + strand, within HUW76_03735at 744.594 kb on + strand, within HUW76_03735at 744.594 kb on + strand, within HUW76_03735at 744.597 kb on - strand, within HUW76_03735at 744.597 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.602 kb on - strand, within HUW76_03735at 744.688 kb on - strand, within HUW76_03735at 744.730 kb on + strand, within HUW76_03735at 744.816 kb on - strand, within HUW76_03735at 744.870 kb on - strand, within HUW76_03735at 744.885 kb on - strand, within HUW76_03735at 744.892 kb on - strand, within HUW76_03735at 744.892 kb on - strand, within HUW76_03735at 744.919 kb on + strand, within HUW76_03735at 745.003 kb on - strand, within HUW76_03735at 745.004 kb on - strand, within HUW76_03735at 745.004 kb on - strand, within HUW76_03735at 745.138 kb on + strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.146 kb on - strand, within HUW76_03735at 745.185 kb on - strand, within HUW76_03735at 745.243 kb on + strand, within HUW76_03735at 745.300 kb on - strand, within HUW76_03735at 745.380 kb on - strand, within HUW76_03735at 745.444 kb on - strand, within HUW76_03735at 745.568 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.578 kb on - strand, within HUW76_03735at 745.639 kb on + strand, within HUW76_03735at 745.709 kb on + strandat 745.717 kb on - strandat 745.717 kb on - strandat 745.718 kb on + strandat 745.727 kb on - strandat 745.733 kb on - strandat 745.733 kb on - strandat 745.737 kb on + strandat 745.750 kb on - strandat 745.808 kb on - strandat 746.061 kb on + strandat 746.061 kb on + strandat 746.090 kb on + strandat 746.090 kb on + strandat 746.235 kb on - strand, within HUW76_03740at 746.302 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.307 kb on + strand, within HUW76_03740at 746.315 kb on - strand, within HUW76_03740at 746.322 kb on + strand, within HUW76_03740at 746.324 kb on + strand, within HUW76_03740at 746.324 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.453 kb on + strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.461 kb on - strand, within HUW76_03740at 746.463 kb on + strand, within HUW76_03740at 746.471 kb on - strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.487 kb on + strand, within HUW76_03740at 746.495 kb on - strand, within HUW76_03740at 746.495 kb on - strand, within HUW76_03740at 746.578 kb on - strand, within HUW76_03740at 746.594 kb on - strand, within HUW76_03740at 746.604 kb on - strand, within HUW76_03740at 746.604 kb on - strand, within HUW76_03740at 746.673 kb on - strand, within HUW76_03740at 746.673 kb on - strand, within HUW76_03740at 746.710 kb on - strand, within HUW76_03740

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber (C)
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743,263 + HUW76_03725 0.33 -2.9
743,303 + HUW76_03725 0.40 +0.7
743,350 - HUW76_03725 0.48 -1.6
743,413 + HUW76_03725 0.59 +0.3
743,458 + HUW76_03725 0.67 -0.6
743,468 + HUW76_03725 0.69 -0.6
743,468 + HUW76_03725 0.69 -2.8
743,468 + HUW76_03725 0.69 -1.6
743,468 + HUW76_03725 0.69 -1.4
743,468 + HUW76_03725 0.69 -2.4
743,476 - HUW76_03725 0.70 -1.0
743,476 - HUW76_03725 0.70 -1.2
743,478 + HUW76_03725 0.70 -0.2
743,478 + HUW76_03725 0.70 +0.3
743,478 + HUW76_03725 0.70 -0.3
743,486 - HUW76_03725 0.72 +0.3
743,486 - HUW76_03725 0.72 -0.3
743,497 + HUW76_03725 0.74 -0.5
743,497 + HUW76_03725 0.74 -1.2
743,497 + HUW76_03725 0.74 -0.7
743,517 + HUW76_03725 0.77 +0.7
743,517 + HUW76_03725 0.77 -2.2
743,517 - HUW76_03725 0.77 +0.5
743,529 + HUW76_03725 0.79 -0.9
743,561 - HUW76_03725 0.85 -2.2
743,579 - HUW76_03725 0.88 +3.5
743,579 - HUW76_03725 0.88 +2.3
743,579 - HUW76_03725 0.88 +1.7
743,621 + -1.9
743,648 + -0.3
743,745 + HUW76_03730 0.12 -0.5
743,745 + HUW76_03730 0.12 -0.6
743,745 + HUW76_03730 0.12 +1.7
743,745 + HUW76_03730 0.12 -0.6
743,745 + HUW76_03730 0.12 +1.0
743,745 + HUW76_03730 0.12 +0.7
743,753 - HUW76_03730 0.16 -0.6
743,753 - HUW76_03730 0.16 +0.6
743,753 - HUW76_03730 0.16 +1.2
743,753 - HUW76_03730 0.16 +0.5
743,753 - HUW76_03730 0.16 +0.5
743,753 - HUW76_03730 0.16 -3.2
743,753 - HUW76_03730 0.16 -2.8
743,769 + HUW76_03730 0.23 +1.7
743,853 - HUW76_03730 0.62 +1.0
743,853 - HUW76_03730 0.62 +0.6
743,887 - HUW76_03730 0.77 -0.0
743,887 - HUW76_03730 0.77 -0.1
744,143 + -2.0
744,268 - +0.6
744,279 - +1.0
744,446 - HUW76_03735 0.15 -1.7
744,446 - HUW76_03735 0.15 -2.0
744,462 + HUW76_03735 0.16 +0.5
744,471 + HUW76_03735 0.17 +3.3
744,484 - HUW76_03735 0.18 +0.7
744,491 + HUW76_03735 0.18 -0.3
744,499 - HUW76_03735 0.19 -0.9
744,562 + HUW76_03735 0.22 +1.3
744,570 - HUW76_03735 0.23 +0.4
744,570 - HUW76_03735 0.23 -0.0
744,587 + HUW76_03735 0.24 +3.3
744,587 + HUW76_03735 0.24 +0.7
744,587 - HUW76_03735 0.24 +0.7
744,592 - HUW76_03735 0.24 +2.3
744,594 + HUW76_03735 0.24 +1.0
744,594 + HUW76_03735 0.24 +1.0
744,594 + HUW76_03735 0.24 +1.7
744,597 - HUW76_03735 0.25 -1.3
744,597 - HUW76_03735 0.25 +1.7
744,602 - HUW76_03735 0.25 -0.9
744,602 - HUW76_03735 0.25 -0.7
744,602 - HUW76_03735 0.25 -0.7
744,602 - HUW76_03735 0.25 -1.0
744,602 - HUW76_03735 0.25 +1.3
744,602 - HUW76_03735 0.25 +4.6
744,602 - HUW76_03735 0.25 -0.3
744,602 - HUW76_03735 0.25 -0.4
744,688 - HUW76_03735 0.30 -0.0
744,730 + HUW76_03735 0.33 +0.5
744,816 - HUW76_03735 0.38 +0.5
744,870 - HUW76_03735 0.41 +2.7
744,885 - HUW76_03735 0.42 -0.0
744,892 - HUW76_03735 0.43 +3.0
744,892 - HUW76_03735 0.43 +0.5
744,919 + HUW76_03735 0.44 +1.3
745,003 - HUW76_03735 0.50 +3.8
745,004 - HUW76_03735 0.50 -0.6
745,004 - HUW76_03735 0.50 -0.8
745,138 + HUW76_03735 0.58 +0.5
745,146 - HUW76_03735 0.58 -0.8
745,146 - HUW76_03735 0.58 +1.3
745,146 - HUW76_03735 0.58 -1.5
745,185 - HUW76_03735 0.61 +3.3
745,243 + HUW76_03735 0.64 +2.7
745,300 - HUW76_03735 0.68 -1.0
745,380 - HUW76_03735 0.73 +0.8
745,444 - HUW76_03735 0.77 +0.7
745,568 - HUW76_03735 0.85 -1.0
745,578 - HUW76_03735 0.85 +1.0
745,578 - HUW76_03735 0.85 +0.5
745,578 - HUW76_03735 0.85 +1.0
745,639 + HUW76_03735 0.89 +3.3
745,709 + +1.7
745,717 - -0.6
745,717 - +2.6
745,718 + +3.7
745,727 - +1.8
745,733 - -1.1
745,733 - +1.5
745,737 + +1.0
745,750 - -0.5
745,808 - +0.6
746,061 + -0.7
746,061 + +2.5
746,090 + -2.1
746,090 + +1.3
746,235 - HUW76_03740 0.24 -0.8
746,302 + HUW76_03740 0.31 -0.9
746,307 + HUW76_03740 0.32 -0.7
746,307 + HUW76_03740 0.32 -1.6
746,307 + HUW76_03740 0.32 -0.7
746,307 + HUW76_03740 0.32 +1.6
746,307 + HUW76_03740 0.32 +1.6
746,307 + HUW76_03740 0.32 +3.7
746,307 + HUW76_03740 0.32 +0.3
746,307 + HUW76_03740 0.32 +0.4
746,315 - HUW76_03740 0.33 -0.3
746,322 + HUW76_03740 0.34 +0.3
746,324 + HUW76_03740 0.34 -0.4
746,324 + HUW76_03740 0.34 -2.0
746,453 + HUW76_03740 0.48 +1.0
746,453 + HUW76_03740 0.48 -0.1
746,453 + HUW76_03740 0.48 -1.5
746,453 + HUW76_03740 0.48 -1.0
746,453 + HUW76_03740 0.48 -1.8
746,453 + HUW76_03740 0.48 +0.8
746,461 - HUW76_03740 0.48 -1.2
746,461 - HUW76_03740 0.48 +1.0
746,461 - HUW76_03740 0.48 -2.8
746,461 - HUW76_03740 0.48 +2.3
746,461 - HUW76_03740 0.48 -1.2
746,461 - HUW76_03740 0.48 -2.4
746,463 + HUW76_03740 0.49 -2.4
746,471 - HUW76_03740 0.50 +1.9
746,487 + HUW76_03740 0.51 +0.7
746,487 + HUW76_03740 0.51 +0.5
746,487 + HUW76_03740 0.51 -1.6
746,487 + HUW76_03740 0.51 -0.1
746,495 - HUW76_03740 0.52 -2.1
746,495 - HUW76_03740 0.52 -1.4
746,578 - HUW76_03740 0.61 +0.3
746,594 - HUW76_03740 0.63 -0.9
746,604 - HUW76_03740 0.64 +2.8
746,604 - HUW76_03740 0.64 +0.9
746,673 - HUW76_03740 0.71 -0.5
746,673 - HUW76_03740 0.71 +0.7
746,710 - HUW76_03740 0.75 -0.8

Or see this region's nucleotide sequence