Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01285

Experiment: Rhamnogalacturonan I from potato pectic fiber (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01280 and HUW76_01285 are separated by 292 nucleotidesHUW76_01285 and HUW76_01290 are separated by 218 nucleotidesHUW76_01290 and HUW76_01295 are separated by 10 nucleotides HUW76_01280: HUW76_01280 - polyribonucleotide nucleotidyltransferase, at 247,891 to 249,990 _01280 HUW76_01285: HUW76_01285 - galactose mutarotase, at 250,283 to 251,260 _01285 HUW76_01290: HUW76_01290 - TSUP family transporter, at 251,479 to 252,243 _01290 HUW76_01295: HUW76_01295 - autotransporter phospholipase A1 FplA, at 252,254 to 254,536 _01295 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 250.162 kb on + strandat 250.162 kb on + strandat 250.187 kb on - strandat 250.189 kb on - strandat 250.189 kb on - strandat 250.234 kb on + strandat 250.266 kb on - strandat 250.284 kb on - strandat 250.314 kb on - strandat 250.345 kb on + strandat 250.382 kb on - strand, within HUW76_01285at 250.408 kb on + strand, within HUW76_01285at 250.408 kb on + strand, within HUW76_01285at 250.431 kb on + strand, within HUW76_01285at 250.438 kb on - strand, within HUW76_01285at 250.447 kb on + strand, within HUW76_01285at 250.447 kb on + strand, within HUW76_01285at 250.453 kb on - strand, within HUW76_01285at 250.453 kb on - strand, within HUW76_01285at 250.455 kb on + strand, within HUW76_01285at 250.457 kb on + strand, within HUW76_01285at 250.460 kb on + strand, within HUW76_01285at 250.463 kb on - strand, within HUW76_01285at 250.463 kb on - strand, within HUW76_01285at 250.468 kb on - strand, within HUW76_01285at 250.468 kb on - strand, within HUW76_01285at 250.557 kb on - strand, within HUW76_01285at 250.559 kb on - strand, within HUW76_01285at 250.561 kb on + strand, within HUW76_01285at 250.561 kb on + strand, within HUW76_01285at 250.567 kb on - strand, within HUW76_01285at 250.567 kb on - strand, within HUW76_01285at 250.569 kb on - strand, within HUW76_01285at 250.569 kb on - strand, within HUW76_01285at 250.569 kb on - strand, within HUW76_01285at 250.569 kb on - strand, within HUW76_01285at 250.569 kb on - strand, within HUW76_01285at 250.594 kb on + strand, within HUW76_01285at 250.602 kb on - strand, within HUW76_01285at 250.602 kb on - strand, within HUW76_01285at 250.759 kb on + strand, within HUW76_01285at 250.759 kb on + strand, within HUW76_01285at 250.783 kb on - strand, within HUW76_01285at 250.865 kb on - strand, within HUW76_01285at 250.884 kb on + strand, within HUW76_01285at 250.892 kb on - strand, within HUW76_01285at 250.892 kb on - strand, within HUW76_01285at 250.892 kb on - strand, within HUW76_01285at 250.897 kb on - strand, within HUW76_01285at 250.897 kb on - strand, within HUW76_01285at 250.900 kb on + strand, within HUW76_01285at 250.931 kb on + strand, within HUW76_01285at 250.931 kb on + strand, within HUW76_01285at 250.965 kb on - strand, within HUW76_01285at 250.965 kb on - strand, within HUW76_01285at 250.965 kb on - strand, within HUW76_01285at 250.993 kb on - strand, within HUW76_01285at 250.993 kb on - strand, within HUW76_01285at 250.993 kb on - strand, within HUW76_01285at 251.075 kb on + strand, within HUW76_01285at 251.075 kb on + strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.083 kb on - strand, within HUW76_01285at 251.132 kb on + strand, within HUW76_01285at 251.309 kb on - strandat 251.309 kb on - strandat 251.462 kb on + strandat 251.470 kb on - strandat 251.599 kb on + strand, within HUW76_01290at 251.607 kb on - strand, within HUW76_01290at 251.607 kb on - strand, within HUW76_01290at 251.618 kb on - strand, within HUW76_01290at 251.618 kb on - strand, within HUW76_01290at 251.620 kb on - strand, within HUW76_01290at 251.620 kb on - strand, within HUW76_01290at 251.620 kb on - strand, within HUW76_01290at 251.624 kb on + strand, within HUW76_01290at 251.624 kb on + strand, within HUW76_01290at 251.624 kb on + strand, within HUW76_01290at 251.625 kb on - strand, within HUW76_01290at 251.658 kb on + strand, within HUW76_01290at 251.689 kb on + strand, within HUW76_01290at 251.689 kb on - strand, within HUW76_01290at 251.689 kb on - strand, within HUW76_01290at 251.705 kb on - strand, within HUW76_01290at 251.705 kb on - strand, within HUW76_01290at 251.771 kb on + strand, within HUW76_01290at 251.887 kb on - strand, within HUW76_01290at 251.966 kb on + strand, within HUW76_01290at 251.966 kb on + strand, within HUW76_01290at 251.973 kb on - strand, within HUW76_01290at 251.973 kb on - strand, within HUW76_01290at 251.974 kb on - strand, within HUW76_01290at 251.974 kb on - strand, within HUW76_01290at 251.974 kb on - strand, within HUW76_01290at 251.974 kb on - strand, within HUW76_01290at 251.982 kb on - strand, within HUW76_01290at 252.026 kb on + strand, within HUW76_01290at 252.026 kb on + strand, within HUW76_01290at 252.051 kb on + strand, within HUW76_01290at 252.051 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.100 kb on + strand, within HUW76_01290at 252.108 kb on - strand, within HUW76_01290at 252.108 kb on - strand, within HUW76_01290at 252.108 kb on - strand, within HUW76_01290at 252.108 kb on - strand, within HUW76_01290at 252.110 kb on + strand, within HUW76_01290at 252.110 kb on + strand, within HUW76_01290at 252.143 kb on + strand, within HUW76_01290at 252.143 kb on + strand, within HUW76_01290at 252.143 kb on + strand, within HUW76_01290at 252.159 kb on - strand, within HUW76_01290at 252.159 kb on - strand, within HUW76_01290at 252.247 kb on + strandat 252.247 kb on + strandat 252.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber (C)
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250,162 + +0.1
250,162 + -1.4
250,187 - +0.4
250,189 - +0.2
250,189 - +0.7
250,234 + -0.4
250,266 - +0.2
250,284 - +0.1
250,314 - -1.2
250,345 + -0.4
250,382 - HUW76_01285 0.10 +0.8
250,408 + HUW76_01285 0.13 -1.5
250,408 + HUW76_01285 0.13 -1.6
250,431 + HUW76_01285 0.15 -0.3
250,438 - HUW76_01285 0.16 -0.7
250,447 + HUW76_01285 0.17 -0.7
250,447 + HUW76_01285 0.17 +0.5
250,453 - HUW76_01285 0.17 +1.6
250,453 - HUW76_01285 0.17 -0.6
250,455 + HUW76_01285 0.18 +1.1
250,457 + HUW76_01285 0.18 +2.4
250,460 + HUW76_01285 0.18 +0.6
250,463 - HUW76_01285 0.18 -0.2
250,463 - HUW76_01285 0.18 +1.6
250,468 - HUW76_01285 0.19 -0.3
250,468 - HUW76_01285 0.19 -2.8
250,557 - HUW76_01285 0.28 -0.8
250,559 - HUW76_01285 0.28 +1.1
250,561 + HUW76_01285 0.28 +0.1
250,561 + HUW76_01285 0.28 +0.1
250,567 - HUW76_01285 0.29 -1.4
250,567 - HUW76_01285 0.29 +0.1
250,569 - HUW76_01285 0.29 -0.5
250,569 - HUW76_01285 0.29 -0.4
250,569 - HUW76_01285 0.29 +0.6
250,569 - HUW76_01285 0.29 -2.0
250,569 - HUW76_01285 0.29 +0.7
250,594 + HUW76_01285 0.32 -0.8
250,602 - HUW76_01285 0.33 -1.4
250,602 - HUW76_01285 0.33 +1.1
250,759 + HUW76_01285 0.49 -2.0
250,759 + HUW76_01285 0.49 +0.5
250,783 - HUW76_01285 0.51 -1.0
250,865 - HUW76_01285 0.60 +0.0
250,884 + HUW76_01285 0.61 -0.4
250,892 - HUW76_01285 0.62 +0.4
250,892 - HUW76_01285 0.62 +0.4
250,892 - HUW76_01285 0.62 -0.4
250,897 - HUW76_01285 0.63 -1.2
250,897 - HUW76_01285 0.63 -0.1
250,900 + HUW76_01285 0.63 -1.3
250,931 + HUW76_01285 0.66 +1.4
250,931 + HUW76_01285 0.66 -0.9
250,965 - HUW76_01285 0.70 +0.5
250,965 - HUW76_01285 0.70 -0.1
250,965 - HUW76_01285 0.70 -1.3
250,993 - HUW76_01285 0.73 -0.4
250,993 - HUW76_01285 0.73 +0.1
250,993 - HUW76_01285 0.73 +1.8
251,075 + HUW76_01285 0.81 +1.4
251,075 + HUW76_01285 0.81 -0.3
251,083 - HUW76_01285 0.82 -2.7
251,083 - HUW76_01285 0.82 +0.2
251,083 - HUW76_01285 0.82 +1.1
251,083 - HUW76_01285 0.82 -0.5
251,083 - HUW76_01285 0.82 +1.2
251,083 - HUW76_01285 0.82 +0.2
251,083 - HUW76_01285 0.82 +1.2
251,132 + HUW76_01285 0.87 -2.4
251,309 - +0.0
251,309 - -0.5
251,462 + -0.4
251,470 - +0.5
251,599 + HUW76_01290 0.16 -0.4
251,607 - HUW76_01290 0.17 +1.0
251,607 - HUW76_01290 0.17 -1.8
251,618 - HUW76_01290 0.18 -1.5
251,618 - HUW76_01290 0.18 +0.2
251,620 - HUW76_01290 0.18 +0.4
251,620 - HUW76_01290 0.18 -2.4
251,620 - HUW76_01290 0.18 +1.8
251,624 + HUW76_01290 0.19 +0.3
251,624 + HUW76_01290 0.19 +0.2
251,624 + HUW76_01290 0.19 -1.8
251,625 - HUW76_01290 0.19 -1.5
251,658 + HUW76_01290 0.23 +2.8
251,689 + HUW76_01290 0.27 -0.9
251,689 - HUW76_01290 0.27 -0.3
251,689 - HUW76_01290 0.27 -0.1
251,705 - HUW76_01290 0.30 -0.9
251,705 - HUW76_01290 0.30 -2.3
251,771 + HUW76_01290 0.38 +0.1
251,887 - HUW76_01290 0.53 +0.9
251,966 + HUW76_01290 0.64 +0.2
251,966 + HUW76_01290 0.64 -2.5
251,973 - HUW76_01290 0.65 -1.5
251,973 - HUW76_01290 0.65 +0.4
251,974 - HUW76_01290 0.65 -0.8
251,974 - HUW76_01290 0.65 +0.7
251,974 - HUW76_01290 0.65 -0.5
251,974 - HUW76_01290 0.65 +0.8
251,982 - HUW76_01290 0.66 -1.6
252,026 + HUW76_01290 0.72 +1.3
252,026 + HUW76_01290 0.72 +0.5
252,051 + HUW76_01290 0.75 +0.0
252,051 + HUW76_01290 0.75 -0.9
252,100 + HUW76_01290 0.81 -2.3
252,100 + HUW76_01290 0.81 +3.2
252,100 + HUW76_01290 0.81 +1.2
252,100 + HUW76_01290 0.81 +3.5
252,100 + HUW76_01290 0.81 +1.2
252,100 + HUW76_01290 0.81 +0.1
252,100 + HUW76_01290 0.81 +0.4
252,100 + HUW76_01290 0.81 -0.6
252,100 + HUW76_01290 0.81 +0.3
252,100 + HUW76_01290 0.81 +1.2
252,108 - HUW76_01290 0.82 +1.3
252,108 - HUW76_01290 0.82 +0.1
252,108 - HUW76_01290 0.82 -1.0
252,108 - HUW76_01290 0.82 -0.9
252,110 + HUW76_01290 0.82 +0.2
252,110 + HUW76_01290 0.82 -0.1
252,143 + HUW76_01290 0.87 -2.3
252,143 + HUW76_01290 0.87 -1.1
252,143 + HUW76_01290 0.87 +0.9
252,159 - HUW76_01290 0.89 -0.7
252,159 - HUW76_01290 0.89 -2.0
252,247 + +0.1
252,247 + -2.0
252,248 - -0.7

Or see this region's nucleotide sequence