Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19090 and LRK53_RS19095 are separated by 111 nucleotides LRK53_RS19095 and LRK53_RS19100 are separated by 57 nucleotides LRK53_RS19100 and LRK53_RS19105 are separated by 99 nucleotides LRK53_RS19105 and LRK53_RS19110 are separated by 61 nucleotides LRK53_RS19110 and LRK53_RS19115 are separated by 349 nucleotides LRK53_RS19115 and LRK53_RS19120 are separated by 11 nucleotides
LRK53_RS19090: LRK53_RS19090 - hypothetical protein, at 205,372 to 206,109
_RS19090
LRK53_RS19095: LRK53_RS19095 - hypothetical protein, at 206,221 to 206,472
_RS19095
LRK53_RS19100: LRK53_RS19100 - hypothetical protein, at 206,530 to 206,901
_RS19100
LRK53_RS19105: LRK53_RS19105 - hypothetical protein, at 207,001 to 207,444
_RS19105
LRK53_RS19110: LRK53_RS19110 - hypothetical protein, at 207,506 to 207,709
_RS19110
LRK53_RS19115: LRK53_RS19115 - hypothetical protein, at 208,059 to 208,373
_RS19115
LRK53_RS19120: LRK53_RS19120 - hypothetical protein, at 208,385 to 208,666
_RS19120
Position (kb) 207
208 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.055 kb on + strand at 206.056 kb on - strand at 206.100 kb on + strand at 206.100 kb on + strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.239 kb on + strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.740 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.843 kb on - strand, within LRK53_RS19100 at 206.967 kb on + strand at 206.968 kb on - strand at 206.968 kb on - strand at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.473 kb on + strand at 207.474 kb on - strand at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.660 kb on - strand, within LRK53_RS19110 at 207.796 kb on + strand at 207.796 kb on + strand at 207.797 kb on - strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 208.103 kb on + strand, within LRK53_RS19115 at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.374 kb on + strand at 208.375 kb on - strand at 208.375 kb on - strand at 208.375 kb on - strand at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.430 kb on + strand, within LRK53_RS19120 at 208.431 kb on - strand, within LRK53_RS19120 at 208.431 kb on - strand, within LRK53_RS19120
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 206,041 + -1.7 206,041 + +1.7 206,041 + +0.9 206,041 + -1.7 206,041 + -0.1 206,041 + -0.5 206,041 + -0.1 206,041 + -1.1 206,041 + -0.3 206,042 - -0.9 206,042 - +0.7 206,042 - -1.0 206,042 - +1.9 206,042 - -1.7 206,042 - -0.3 206,042 - -1.0 206,042 - -0.5 206,042 - -1.3 206,042 - -1.2 206,042 - -0.6 206,042 - +1.5 206,042 - -0.2 206,042 - +0.7 206,042 - +1.0 206,042 - -2.1 206,042 - -0.7 206,042 - -0.1 206,049 + -0.8 206,049 + +1.0 206,049 + +0.9 206,049 + -1.5 206,049 + -1.3 206,049 + -0.5 206,050 - -0.8 206,050 - +0.2 206,050 - +1.2 206,050 - -1.7 206,050 - +2.3 206,055 + -0.2 206,056 - -0.1 206,100 + +1.2 206,100 + -0.9 206,101 - -0.9 206,101 - -1.2 206,101 - -1.1 206,101 - -0.5 206,101 - -0.6 206,101 - -1.1 206,101 - -0.5 206,101 - +0.1 206,147 + -2.8 206,147 + -0.5 206,147 + -1.1 206,147 + -1.1 206,147 + +0.5 206,147 + -2.0 206,147 + -0.6 206,147 + -0.3 206,147 + -0.1 206,147 + +2.0 206,147 + -0.1 206,147 + +0.7 206,147 + -1.8 206,147 + -0.8 206,147 + +0.3 206,148 - +0.9 206,148 - +0.0 206,148 - -1.3 206,148 - +0.3 206,148 - +0.2 206,148 - -1.1 206,148 - +1.1 206,148 - -0.1 206,148 - +1.7 206,148 - -2.3 206,148 - -0.2 206,148 - -0.4 206,148 - +1.7 206,148 - +1.4 206,239 + -1.7 206,240 - -1.3 206,240 - -1.5 206,240 - +1.3 206,374 + LRK53_RS19095 0.61 -1.3 206,374 + LRK53_RS19095 0.61 +0.5 206,374 + LRK53_RS19095 0.61 -2.3 206,374 + LRK53_RS19095 0.61 -0.6 206,374 + LRK53_RS19095 0.61 -1.3 206,374 + LRK53_RS19095 0.61 +2.2 206,374 + LRK53_RS19095 0.61 -2.1 206,374 + LRK53_RS19095 0.61 -2.5 206,374 + LRK53_RS19095 0.61 -1.7 206,374 + LRK53_RS19095 0.61 -0.5 206,374 + LRK53_RS19095 0.61 -1.5 206,375 - LRK53_RS19095 0.61 +1.2 206,375 - LRK53_RS19095 0.61 -3.2 206,375 - LRK53_RS19095 0.61 -1.3 206,375 - LRK53_RS19095 0.61 -3.2 206,375 - LRK53_RS19095 0.61 -0.8 206,375 - LRK53_RS19095 0.61 +0.5 206,375 - LRK53_RS19095 0.61 -0.5 206,375 - LRK53_RS19095 0.61 -0.1 206,581 + LRK53_RS19100 0.14 +1.2 206,581 + LRK53_RS19100 0.14 -2.2 206,581 + LRK53_RS19100 0.14 -2.0 206,582 - LRK53_RS19100 0.14 -1.3 206,582 - LRK53_RS19100 0.14 +1.1 206,740 + LRK53_RS19100 0.56 +1.3 206,842 + LRK53_RS19100 0.84 -1.0 206,842 + LRK53_RS19100 0.84 -3.3 206,843 - LRK53_RS19100 0.84 -0.2 206,967 + +1.0 206,968 - -1.7 206,968 - -1.7 207,139 + LRK53_RS19105 0.31 -0.1 207,139 + LRK53_RS19105 0.31 -0.9 207,139 + LRK53_RS19105 0.31 -2.0 207,139 + LRK53_RS19105 0.31 -2.2 207,139 + LRK53_RS19105 0.31 -3.0 207,139 + LRK53_RS19105 0.31 +0.2 207,139 + LRK53_RS19105 0.31 -1.7 207,140 - LRK53_RS19105 0.31 -1.3 207,140 - LRK53_RS19105 0.31 -0.8 207,140 - LRK53_RS19105 0.31 +0.5 207,140 - LRK53_RS19105 0.31 -2.3 207,140 - LRK53_RS19105 0.31 -0.1 207,140 - LRK53_RS19105 0.31 -1.1 207,140 - LRK53_RS19105 0.31 -0.2 207,140 - LRK53_RS19105 0.31 -2.8 207,140 - LRK53_RS19105 0.31 -2.0 207,473 + -2.4 207,474 - -1.9 207,659 + LRK53_RS19110 0.75 -0.1 207,659 + LRK53_RS19110 0.75 -0.5 207,659 + LRK53_RS19110 0.75 -0.8 207,660 - LRK53_RS19110 0.75 -0.4 207,796 + -2.1 207,796 + +0.0 207,797 - +1.8 207,856 + -0.7 207,856 + -0.5 207,856 + -1.0 207,856 + -0.2 207,856 + +0.3 207,857 - +1.2 207,857 - -0.4 207,857 - -0.8 207,857 - -0.4 207,857 - -1.5 207,857 - -2.3 207,857 - -1.5 207,881 + -0.3 207,881 + -0.2 207,881 + -1.4 207,881 + -0.4 207,881 + +1.3 207,881 + -0.4 207,881 + -1.0 207,881 + -1.1 207,881 + -1.0 207,881 + -0.0 207,881 + -0.3 207,882 - +1.0 207,882 - -1.3 207,882 - -0.8 207,882 - -2.1 207,882 - -0.8 207,882 - -0.3 207,882 - -0.0 207,882 - -1.7 207,882 - -2.2 207,882 - -0.4 207,882 - -0.5 207,882 - -1.5 207,882 - -0.3 208,103 + LRK53_RS19115 0.14 -0.3 208,374 + -0.7 208,374 + -0.9 208,374 + -0.1 208,374 + +0.0 208,374 + -0.9 208,375 - +1.5 208,375 - -1.7 208,375 - -1.5 208,430 + LRK53_RS19120 0.16 -1.5 208,430 + LRK53_RS19120 0.16 -0.4 208,430 + LRK53_RS19120 0.16 -0.2 208,430 + LRK53_RS19120 0.16 +1.0 208,431 - LRK53_RS19120 0.16 -2.1 208,431 - LRK53_RS19120 0.16 -3.8
Or see this region's nucleotide sequence