Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16120 and LRK53_RS16125 are separated by 98 nucleotides LRK53_RS16125 and LRK53_RS16130 are separated by 67 nucleotides LRK53_RS16130 and LRK53_RS16135 are separated by 57 nucleotides
LRK53_RS16120: LRK53_RS16120 - LPS export ABC transporter permease LptF, at 3,543,568 to 3,544,683
_RS16120
LRK53_RS16125: LRK53_RS16125 - leucyl aminopeptidase, at 3,544,782 to 3,546,269
_RS16125
LRK53_RS16130: LRK53_RS16130 - DNA polymerase III subunit chi, at 3,546,337 to 3,546,756
_RS16130
LRK53_RS16135: LRK53_RS16135 - hybrid sensor histidine kinase/response regulator, at 3,546,814 to 3,550,395
_RS16135
Position (kb)
3544
3545
3546
3547 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3544.689 kb on - strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.739 kb on + strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.740 kb on - strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3544.854 kb on + strand at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.118 kb on + strand, within LRK53_RS16125 at 3545.119 kb on - strand, within LRK53_RS16125 at 3545.199 kb on + strand, within LRK53_RS16125 at 3545.205 kb on + strand, within LRK53_RS16125 at 3545.205 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.379 kb on + strand, within LRK53_RS16125 at 3545.380 kb on - strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.532 kb on + strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.533 kb on - strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.763 kb on + strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.764 kb on - strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.862 kb on + strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.863 kb on - strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.864 kb on + strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3545.865 kb on - strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.048 kb on + strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.049 kb on - strand, within LRK53_RS16125 at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.281 kb on + strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.282 kb on - strand at 3546.336 kb on + strand at 3546.336 kb on + strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.337 kb on - strand at 3546.973 kb on + strand at 3546.974 kb on - strand at 3547.194 kb on - strand, within LRK53_RS16135
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 3,544,689 - -2.1 3,544,739 + +0.3 3,544,739 + -1.8 3,544,739 + +0.5 3,544,739 + +2.2 3,544,739 + +1.7 3,544,740 - -2.1 3,544,740 - -0.8 3,544,740 - +1.2 3,544,740 - +0.7 3,544,740 - +0.9 3,544,740 - -1.4 3,544,740 - +0.8 3,544,854 + -0.8 3,544,854 + -1.0 3,544,854 + -0.9 3,544,854 + -0.5 3,544,854 + -0.4 3,545,118 + LRK53_RS16125 0.23 +0.2 3,545,118 + LRK53_RS16125 0.23 -2.2 3,545,118 + LRK53_RS16125 0.23 -0.3 3,545,118 + LRK53_RS16125 0.23 -0.5 3,545,118 + LRK53_RS16125 0.23 -0.5 3,545,118 + LRK53_RS16125 0.23 -2.7 3,545,118 + LRK53_RS16125 0.23 +0.6 3,545,118 + LRK53_RS16125 0.23 -0.6 3,545,118 + LRK53_RS16125 0.23 -2.5 3,545,118 + LRK53_RS16125 0.23 -1.0 3,545,118 + LRK53_RS16125 0.23 -1.2 3,545,119 - LRK53_RS16125 0.23 -0.6 3,545,199 + LRK53_RS16125 0.28 -1.6 3,545,205 + LRK53_RS16125 0.28 -0.6 3,545,205 + LRK53_RS16125 0.28 -2.6 3,545,379 + LRK53_RS16125 0.40 -0.6 3,545,379 + LRK53_RS16125 0.40 -1.0 3,545,379 + LRK53_RS16125 0.40 +0.9 3,545,379 + LRK53_RS16125 0.40 -1.2 3,545,379 + LRK53_RS16125 0.40 +1.1 3,545,379 + LRK53_RS16125 0.40 -0.1 3,545,379 + LRK53_RS16125 0.40 -0.6 3,545,379 + LRK53_RS16125 0.40 -0.7 3,545,379 + LRK53_RS16125 0.40 -0.0 3,545,379 + LRK53_RS16125 0.40 +2.1 3,545,379 + LRK53_RS16125 0.40 -0.1 3,545,380 - LRK53_RS16125 0.40 -0.1 3,545,532 + LRK53_RS16125 0.50 -0.5 3,545,532 + LRK53_RS16125 0.50 -0.1 3,545,532 + LRK53_RS16125 0.50 -0.2 3,545,532 + LRK53_RS16125 0.50 -0.3 3,545,532 + LRK53_RS16125 0.50 -0.1 3,545,532 + LRK53_RS16125 0.50 -0.0 3,545,532 + LRK53_RS16125 0.50 +0.4 3,545,532 + LRK53_RS16125 0.50 -1.8 3,545,532 + LRK53_RS16125 0.50 -1.0 3,545,532 + LRK53_RS16125 0.50 -0.2 3,545,532 + LRK53_RS16125 0.50 -2.7 3,545,532 + LRK53_RS16125 0.50 -0.4 3,545,532 + LRK53_RS16125 0.50 -3.2 3,545,532 + LRK53_RS16125 0.50 -2.6 3,545,532 + LRK53_RS16125 0.50 +0.0 3,545,532 + LRK53_RS16125 0.50 -0.9 3,545,532 + LRK53_RS16125 0.50 +1.5 3,545,532 + LRK53_RS16125 0.50 -1.8 3,545,532 + LRK53_RS16125 0.50 -0.5 3,545,533 - LRK53_RS16125 0.50 -1.4 3,545,533 - LRK53_RS16125 0.50 -0.7 3,545,533 - LRK53_RS16125 0.50 -0.2 3,545,533 - LRK53_RS16125 0.50 +0.1 3,545,763 + LRK53_RS16125 0.66 -0.2 3,545,763 + LRK53_RS16125 0.66 -0.1 3,545,763 + LRK53_RS16125 0.66 -1.8 3,545,763 + LRK53_RS16125 0.66 -1.8 3,545,763 + LRK53_RS16125 0.66 -0.3 3,545,763 + LRK53_RS16125 0.66 -3.3 3,545,763 + LRK53_RS16125 0.66 -3.0 3,545,764 - LRK53_RS16125 0.66 -0.5 3,545,764 - LRK53_RS16125 0.66 -0.9 3,545,764 - LRK53_RS16125 0.66 +1.1 3,545,862 + LRK53_RS16125 0.73 +0.4 3,545,862 + LRK53_RS16125 0.73 -1.8 3,545,862 + LRK53_RS16125 0.73 -2.0 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,862 + LRK53_RS16125 0.73 +0.0 3,545,862 + LRK53_RS16125 0.73 -2.3 3,545,862 + LRK53_RS16125 0.73 -1.5 3,545,862 + LRK53_RS16125 0.73 -2.0 3,545,862 + LRK53_RS16125 0.73 +0.2 3,545,862 + LRK53_RS16125 0.73 -0.9 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -1.4 3,545,862 + LRK53_RS16125 0.73 +0.7 3,545,862 + LRK53_RS16125 0.73 -2.8 3,545,862 + LRK53_RS16125 0.73 -0.6 3,545,862 + LRK53_RS16125 0.73 +0.6 3,545,862 + LRK53_RS16125 0.73 -0.2 3,545,862 + LRK53_RS16125 0.73 -0.9 3,545,862 + LRK53_RS16125 0.73 -0.1 3,545,862 + LRK53_RS16125 0.73 -1.1 3,545,862 + LRK53_RS16125 0.73 -1.1 3,545,862 + LRK53_RS16125 0.73 +0.6 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -2.1 3,545,862 + LRK53_RS16125 0.73 -0.1 3,545,862 + LRK53_RS16125 0.73 +1.0 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,862 + LRK53_RS16125 0.73 -0.5 3,545,862 + LRK53_RS16125 0.73 -1.1 3,545,862 + LRK53_RS16125 0.73 -0.4 3,545,862 + LRK53_RS16125 0.73 +0.9 3,545,862 + LRK53_RS16125 0.73 -0.6 3,545,862 + LRK53_RS16125 0.73 -1.0 3,545,862 + LRK53_RS16125 0.73 -0.8 3,545,862 + LRK53_RS16125 0.73 -0.7 3,545,862 + LRK53_RS16125 0.73 -0.0 3,545,862 + LRK53_RS16125 0.73 +0.9 3,545,862 + LRK53_RS16125 0.73 -1.6 3,545,862 + LRK53_RS16125 0.73 -2.4 3,545,862 + LRK53_RS16125 0.73 -1.4 3,545,863 - LRK53_RS16125 0.73 -0.2 3,545,863 - LRK53_RS16125 0.73 +1.5 3,545,863 - LRK53_RS16125 0.73 -1.6 3,545,863 - LRK53_RS16125 0.73 -0.6 3,545,863 - LRK53_RS16125 0.73 +0.1 3,545,863 - LRK53_RS16125 0.73 -0.4 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -1.2 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 -1.4 3,545,863 - LRK53_RS16125 0.73 -1.7 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -0.2 3,545,863 - LRK53_RS16125 0.73 +3.3 3,545,863 - LRK53_RS16125 0.73 -0.4 3,545,863 - LRK53_RS16125 0.73 -1.7 3,545,863 - LRK53_RS16125 0.73 -1.4 3,545,863 - LRK53_RS16125 0.73 -0.7 3,545,863 - LRK53_RS16125 0.73 -1.7 3,545,863 - LRK53_RS16125 0.73 +0.5 3,545,863 - LRK53_RS16125 0.73 +0.1 3,545,863 - LRK53_RS16125 0.73 -1.0 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,863 - LRK53_RS16125 0.73 +0.3 3,545,863 - LRK53_RS16125 0.73 -1.8 3,545,863 - LRK53_RS16125 0.73 +0.2 3,545,863 - LRK53_RS16125 0.73 -2.1 3,545,863 - LRK53_RS16125 0.73 -0.7 3,545,863 - LRK53_RS16125 0.73 -3.3 3,545,863 - LRK53_RS16125 0.73 -0.9 3,545,863 - LRK53_RS16125 0.73 -0.2 3,545,863 - LRK53_RS16125 0.73 -1.3 3,545,863 - LRK53_RS16125 0.73 -1.0 3,545,863 - LRK53_RS16125 0.73 -0.1 3,545,863 - LRK53_RS16125 0.73 +0.2 3,545,863 - LRK53_RS16125 0.73 -0.5 3,545,864 + LRK53_RS16125 0.73 -1.5 3,545,864 + LRK53_RS16125 0.73 -0.2 3,545,864 + LRK53_RS16125 0.73 -0.4 3,545,865 - LRK53_RS16125 0.73 -0.1 3,545,865 - LRK53_RS16125 0.73 -0.4 3,545,865 - LRK53_RS16125 0.73 -0.1 3,545,865 - LRK53_RS16125 0.73 +0.8 3,546,048 + LRK53_RS16125 0.85 -1.9 3,546,048 + LRK53_RS16125 0.85 -1.6 3,546,048 + LRK53_RS16125 0.85 -0.1 3,546,048 + LRK53_RS16125 0.85 +0.3 3,546,048 + LRK53_RS16125 0.85 -0.0 3,546,049 - LRK53_RS16125 0.85 -0.5 3,546,049 - LRK53_RS16125 0.85 +0.2 3,546,049 - LRK53_RS16125 0.85 -0.2 3,546,049 - LRK53_RS16125 0.85 +0.5 3,546,281 + +1.5 3,546,281 + -0.6 3,546,281 + -1.0 3,546,281 + +0.1 3,546,281 + -1.8 3,546,281 + +0.3 3,546,281 + +0.6 3,546,281 + -1.1 3,546,281 + -1.9 3,546,281 + -1.5 3,546,281 + -0.3 3,546,281 + -0.9 3,546,282 - +1.2 3,546,282 - +0.4 3,546,282 - +0.2 3,546,282 - -1.1 3,546,282 - -0.9 3,546,282 - -0.2 3,546,282 - -1.5 3,546,282 - -2.5 3,546,282 - +0.8 3,546,282 - -1.7 3,546,282 - +0.5 3,546,282 - -0.6 3,546,282 - -1.0 3,546,282 - -0.4 3,546,336 + -1.6 3,546,336 + -0.2 3,546,337 - +0.3 3,546,337 - -0.7 3,546,337 - -1.6 3,546,337 - -2.2 3,546,337 - -0.2 3,546,337 - -0.5 3,546,973 + -0.4 3,546,974 - +1.0 3,547,194 - LRK53_RS16135 0.11 -0.8
Or see this region's nucleotide sequence