Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16125

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16120 and LRK53_RS16125 are separated by 98 nucleotidesLRK53_RS16125 and LRK53_RS16130 are separated by 67 nucleotidesLRK53_RS16130 and LRK53_RS16135 are separated by 57 nucleotides LRK53_RS16120: LRK53_RS16120 - LPS export ABC transporter permease LptF, at 3,543,568 to 3,544,683 _RS16120 LRK53_RS16125: LRK53_RS16125 - leucyl aminopeptidase, at 3,544,782 to 3,546,269 _RS16125 LRK53_RS16130: LRK53_RS16130 - DNA polymerase III subunit chi, at 3,546,337 to 3,546,756 _RS16130 LRK53_RS16135: LRK53_RS16135 - hybrid sensor histidine kinase/response regulator, at 3,546,814 to 3,550,395 _RS16135 Position (kb) 3544 3545 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3544.689 kb on - strandat 3544.739 kb on + strandat 3544.739 kb on + strandat 3544.739 kb on + strandat 3544.739 kb on + strandat 3544.739 kb on + strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.740 kb on - strandat 3544.854 kb on + strandat 3544.854 kb on + strandat 3544.854 kb on + strandat 3544.854 kb on + strandat 3544.854 kb on + strandat 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.118 kb on + strand, within LRK53_RS16125at 3545.119 kb on - strand, within LRK53_RS16125at 3545.199 kb on + strand, within LRK53_RS16125at 3545.205 kb on + strand, within LRK53_RS16125at 3545.205 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.379 kb on + strand, within LRK53_RS16125at 3545.380 kb on - strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.532 kb on + strand, within LRK53_RS16125at 3545.533 kb on - strand, within LRK53_RS16125at 3545.533 kb on - strand, within LRK53_RS16125at 3545.533 kb on - strand, within LRK53_RS16125at 3545.533 kb on - strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.763 kb on + strand, within LRK53_RS16125at 3545.764 kb on - strand, within LRK53_RS16125at 3545.764 kb on - strand, within LRK53_RS16125at 3545.764 kb on - strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.862 kb on + strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.863 kb on - strand, within LRK53_RS16125at 3545.864 kb on + strand, within LRK53_RS16125at 3545.864 kb on + strand, within LRK53_RS16125at 3545.864 kb on + strand, within LRK53_RS16125at 3545.865 kb on - strand, within LRK53_RS16125at 3545.865 kb on - strand, within LRK53_RS16125at 3545.865 kb on - strand, within LRK53_RS16125at 3545.865 kb on - strand, within LRK53_RS16125at 3546.048 kb on + strand, within LRK53_RS16125at 3546.048 kb on + strand, within LRK53_RS16125at 3546.048 kb on + strand, within LRK53_RS16125at 3546.048 kb on + strand, within LRK53_RS16125at 3546.048 kb on + strand, within LRK53_RS16125at 3546.049 kb on - strand, within LRK53_RS16125at 3546.049 kb on - strand, within LRK53_RS16125at 3546.049 kb on - strand, within LRK53_RS16125at 3546.049 kb on - strand, within LRK53_RS16125at 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.281 kb on + strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.282 kb on - strandat 3546.336 kb on + strandat 3546.336 kb on + strandat 3546.337 kb on - strandat 3546.337 kb on - strandat 3546.337 kb on - strandat 3546.337 kb on - strandat 3546.337 kb on - strandat 3546.337 kb on - strandat 3546.973 kb on + strandat 3546.974 kb on - strandat 3547.194 kb on - strand, within LRK53_RS16135

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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3,544,689 - -2.1
3,544,739 + +0.3
3,544,739 + -1.8
3,544,739 + +0.5
3,544,739 + +2.2
3,544,739 + +1.7
3,544,740 - -2.1
3,544,740 - -0.8
3,544,740 - +1.2
3,544,740 - +0.7
3,544,740 - +0.9
3,544,740 - -1.4
3,544,740 - +0.8
3,544,854 + -0.8
3,544,854 + -1.0
3,544,854 + -0.9
3,544,854 + -0.5
3,544,854 + -0.4
3,545,118 + LRK53_RS16125 0.23 +0.2
3,545,118 + LRK53_RS16125 0.23 -2.2
3,545,118 + LRK53_RS16125 0.23 -0.3
3,545,118 + LRK53_RS16125 0.23 -0.5
3,545,118 + LRK53_RS16125 0.23 -0.5
3,545,118 + LRK53_RS16125 0.23 -2.7
3,545,118 + LRK53_RS16125 0.23 +0.6
3,545,118 + LRK53_RS16125 0.23 -0.6
3,545,118 + LRK53_RS16125 0.23 -2.5
3,545,118 + LRK53_RS16125 0.23 -1.0
3,545,118 + LRK53_RS16125 0.23 -1.2
3,545,119 - LRK53_RS16125 0.23 -0.6
3,545,199 + LRK53_RS16125 0.28 -1.6
3,545,205 + LRK53_RS16125 0.28 -0.6
3,545,205 + LRK53_RS16125 0.28 -2.6
3,545,379 + LRK53_RS16125 0.40 -0.6
3,545,379 + LRK53_RS16125 0.40 -1.0
3,545,379 + LRK53_RS16125 0.40 +0.9
3,545,379 + LRK53_RS16125 0.40 -1.2
3,545,379 + LRK53_RS16125 0.40 +1.1
3,545,379 + LRK53_RS16125 0.40 -0.1
3,545,379 + LRK53_RS16125 0.40 -0.6
3,545,379 + LRK53_RS16125 0.40 -0.7
3,545,379 + LRK53_RS16125 0.40 -0.0
3,545,379 + LRK53_RS16125 0.40 +2.1
3,545,379 + LRK53_RS16125 0.40 -0.1
3,545,380 - LRK53_RS16125 0.40 -0.1
3,545,532 + LRK53_RS16125 0.50 -0.5
3,545,532 + LRK53_RS16125 0.50 -0.1
3,545,532 + LRK53_RS16125 0.50 -0.2
3,545,532 + LRK53_RS16125 0.50 -0.3
3,545,532 + LRK53_RS16125 0.50 -0.1
3,545,532 + LRK53_RS16125 0.50 -0.0
3,545,532 + LRK53_RS16125 0.50 +0.4
3,545,532 + LRK53_RS16125 0.50 -1.8
3,545,532 + LRK53_RS16125 0.50 -1.0
3,545,532 + LRK53_RS16125 0.50 -0.2
3,545,532 + LRK53_RS16125 0.50 -2.7
3,545,532 + LRK53_RS16125 0.50 -0.4
3,545,532 + LRK53_RS16125 0.50 -3.2
3,545,532 + LRK53_RS16125 0.50 -2.6
3,545,532 + LRK53_RS16125 0.50 +0.0
3,545,532 + LRK53_RS16125 0.50 -0.9
3,545,532 + LRK53_RS16125 0.50 +1.5
3,545,532 + LRK53_RS16125 0.50 -1.8
3,545,532 + LRK53_RS16125 0.50 -0.5
3,545,533 - LRK53_RS16125 0.50 -1.4
3,545,533 - LRK53_RS16125 0.50 -0.7
3,545,533 - LRK53_RS16125 0.50 -0.2
3,545,533 - LRK53_RS16125 0.50 +0.1
3,545,763 + LRK53_RS16125 0.66 -0.2
3,545,763 + LRK53_RS16125 0.66 -0.1
3,545,763 + LRK53_RS16125 0.66 -1.8
3,545,763 + LRK53_RS16125 0.66 -1.8
3,545,763 + LRK53_RS16125 0.66 -0.3
3,545,763 + LRK53_RS16125 0.66 -3.3
3,545,763 + LRK53_RS16125 0.66 -3.0
3,545,764 - LRK53_RS16125 0.66 -0.5
3,545,764 - LRK53_RS16125 0.66 -0.9
3,545,764 - LRK53_RS16125 0.66 +1.1
3,545,862 + LRK53_RS16125 0.73 +0.4
3,545,862 + LRK53_RS16125 0.73 -1.8
3,545,862 + LRK53_RS16125 0.73 -2.0
3,545,862 + LRK53_RS16125 0.73 -0.8
3,545,862 + LRK53_RS16125 0.73 +0.0
3,545,862 + LRK53_RS16125 0.73 -2.3
3,545,862 + LRK53_RS16125 0.73 -1.5
3,545,862 + LRK53_RS16125 0.73 -2.0
3,545,862 + LRK53_RS16125 0.73 +0.2
3,545,862 + LRK53_RS16125 0.73 -0.9
3,545,862 + LRK53_RS16125 0.73 -0.7
3,545,862 + LRK53_RS16125 0.73 -1.4
3,545,862 + LRK53_RS16125 0.73 +0.7
3,545,862 + LRK53_RS16125 0.73 -2.8
3,545,862 + LRK53_RS16125 0.73 -0.6
3,545,862 + LRK53_RS16125 0.73 +0.6
3,545,862 + LRK53_RS16125 0.73 -0.2
3,545,862 + LRK53_RS16125 0.73 -0.9
3,545,862 + LRK53_RS16125 0.73 -0.1
3,545,862 + LRK53_RS16125 0.73 -1.1
3,545,862 + LRK53_RS16125 0.73 -1.1
3,545,862 + LRK53_RS16125 0.73 +0.6
3,545,862 + LRK53_RS16125 0.73 -0.7
3,545,862 + LRK53_RS16125 0.73 -2.1
3,545,862 + LRK53_RS16125 0.73 -0.1
3,545,862 + LRK53_RS16125 0.73 +1.0
3,545,862 + LRK53_RS16125 0.73 -0.8
3,545,862 + LRK53_RS16125 0.73 -0.5
3,545,862 + LRK53_RS16125 0.73 -1.1
3,545,862 + LRK53_RS16125 0.73 -0.4
3,545,862 + LRK53_RS16125 0.73 +0.9
3,545,862 + LRK53_RS16125 0.73 -0.6
3,545,862 + LRK53_RS16125 0.73 -1.0
3,545,862 + LRK53_RS16125 0.73 -0.8
3,545,862 + LRK53_RS16125 0.73 -0.7
3,545,862 + LRK53_RS16125 0.73 -0.0
3,545,862 + LRK53_RS16125 0.73 +0.9
3,545,862 + LRK53_RS16125 0.73 -1.6
3,545,862 + LRK53_RS16125 0.73 -2.4
3,545,862 + LRK53_RS16125 0.73 -1.4
3,545,863 - LRK53_RS16125 0.73 -0.2
3,545,863 - LRK53_RS16125 0.73 +1.5
3,545,863 - LRK53_RS16125 0.73 -1.6
3,545,863 - LRK53_RS16125 0.73 -0.6
3,545,863 - LRK53_RS16125 0.73 +0.1
3,545,863 - LRK53_RS16125 0.73 -0.4
3,545,863 - LRK53_RS16125 0.73 -0.5
3,545,863 - LRK53_RS16125 0.73 -0.5
3,545,863 - LRK53_RS16125 0.73 -1.2
3,545,863 - LRK53_RS16125 0.73 -0.5
3,545,863 - LRK53_RS16125 0.73 -1.4
3,545,863 - LRK53_RS16125 0.73 -1.7
3,545,863 - LRK53_RS16125 0.73 -1.3
3,545,863 - LRK53_RS16125 0.73 -0.2
3,545,863 - LRK53_RS16125 0.73 +3.3
3,545,863 - LRK53_RS16125 0.73 -0.4
3,545,863 - LRK53_RS16125 0.73 -1.7
3,545,863 - LRK53_RS16125 0.73 -1.4
3,545,863 - LRK53_RS16125 0.73 -0.7
3,545,863 - LRK53_RS16125 0.73 -1.7
3,545,863 - LRK53_RS16125 0.73 +0.5
3,545,863 - LRK53_RS16125 0.73 +0.1
3,545,863 - LRK53_RS16125 0.73 -1.0
3,545,863 - LRK53_RS16125 0.73 -0.5
3,545,863 - LRK53_RS16125 0.73 +0.3
3,545,863 - LRK53_RS16125 0.73 -1.8
3,545,863 - LRK53_RS16125 0.73 +0.2
3,545,863 - LRK53_RS16125 0.73 -2.1
3,545,863 - LRK53_RS16125 0.73 -0.7
3,545,863 - LRK53_RS16125 0.73 -3.3
3,545,863 - LRK53_RS16125 0.73 -0.9
3,545,863 - LRK53_RS16125 0.73 -0.2
3,545,863 - LRK53_RS16125 0.73 -1.3
3,545,863 - LRK53_RS16125 0.73 -1.0
3,545,863 - LRK53_RS16125 0.73 -0.1
3,545,863 - LRK53_RS16125 0.73 +0.2
3,545,863 - LRK53_RS16125 0.73 -0.5
3,545,864 + LRK53_RS16125 0.73 -1.5
3,545,864 + LRK53_RS16125 0.73 -0.2
3,545,864 + LRK53_RS16125 0.73 -0.4
3,545,865 - LRK53_RS16125 0.73 -0.1
3,545,865 - LRK53_RS16125 0.73 -0.4
3,545,865 - LRK53_RS16125 0.73 -0.1
3,545,865 - LRK53_RS16125 0.73 +0.8
3,546,048 + LRK53_RS16125 0.85 -1.9
3,546,048 + LRK53_RS16125 0.85 -1.6
3,546,048 + LRK53_RS16125 0.85 -0.1
3,546,048 + LRK53_RS16125 0.85 +0.3
3,546,048 + LRK53_RS16125 0.85 -0.0
3,546,049 - LRK53_RS16125 0.85 -0.5
3,546,049 - LRK53_RS16125 0.85 +0.2
3,546,049 - LRK53_RS16125 0.85 -0.2
3,546,049 - LRK53_RS16125 0.85 +0.5
3,546,281 + +1.5
3,546,281 + -0.6
3,546,281 + -1.0
3,546,281 + +0.1
3,546,281 + -1.8
3,546,281 + +0.3
3,546,281 + +0.6
3,546,281 + -1.1
3,546,281 + -1.9
3,546,281 + -1.5
3,546,281 + -0.3
3,546,281 + -0.9
3,546,282 - +1.2
3,546,282 - +0.4
3,546,282 - +0.2
3,546,282 - -1.1
3,546,282 - -0.9
3,546,282 - -0.2
3,546,282 - -1.5
3,546,282 - -2.5
3,546,282 - +0.8
3,546,282 - -1.7
3,546,282 - +0.5
3,546,282 - -0.6
3,546,282 - -1.0
3,546,282 - -0.4
3,546,336 + -1.6
3,546,336 + -0.2
3,546,337 - +0.3
3,546,337 - -0.7
3,546,337 - -1.6
3,546,337 - -2.2
3,546,337 - -0.2
3,546,337 - -0.5
3,546,973 + -0.4
3,546,974 - +1.0
3,547,194 - LRK53_RS16135 0.11 -0.8

Or see this region's nucleotide sequence