Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11825

Experiment: Biofilm; Day4; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS11820 and LRK53_RS11825 are separated by 88 nucleotidesLRK53_RS11825 and LRK53_RS11830 are separated by 67 nucleotides LRK53_RS11820: LRK53_RS11820 - phospholipase D-like domain-containing protein, at 2,631,619 to 2,633,085 _RS11820 LRK53_RS11825: LRK53_RS11825 - exodeoxyribonuclease VII large subunit, at 2,633,174 to 2,634,523 _RS11825 LRK53_RS11830: LRK53_RS11830 - acetolactate synthase large subunit, at 2,634,591 to 2,636,234 _RS11830 Position (kb) 2633 2634 2635Strain fitness (log2 ratio) -2 -1 0 1 2at 2632.300 kb on + strand, within LRK53_RS11820at 2632.360 kb on + strand, within LRK53_RS11820at 2632.360 kb on + strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.361 kb on - strand, within LRK53_RS11820at 2632.381 kb on + strand, within LRK53_RS11820at 2632.381 kb on + strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820at 2632.382 kb on - strand, within LRK53_RS11820at 2632.681 kb on + strand, within LRK53_RS11820at 2632.681 kb on + strand, within LRK53_RS11820at 2632.681 kb on + strand, within LRK53_RS11820at 2632.681 kb on + strand, within LRK53_RS11820at 2633.145 kb on + strandat 2633.159 kb on + strandat 2633.159 kb on + strandat 2633.159 kb on + strandat 2633.160 kb on - strandat 2633.173 kb on + strandat 2633.174 kb on - strandat 2633.327 kb on + strand, within LRK53_RS11825at 2633.328 kb on - strand, within LRK53_RS11825at 2633.328 kb on - strand, within LRK53_RS11825at 2633.328 kb on - strand, within LRK53_RS11825at 2633.450 kb on + strand, within LRK53_RS11825at 2633.451 kb on - strand, within LRK53_RS11825at 2633.451 kb on - strand, within LRK53_RS11825at 2633.486 kb on + strand, within LRK53_RS11825at 2633.486 kb on + strand, within LRK53_RS11825at 2633.486 kb on + strand, within LRK53_RS11825at 2633.486 kb on + strand, within LRK53_RS11825at 2633.487 kb on - strand, within LRK53_RS11825at 2633.487 kb on - strand, within LRK53_RS11825at 2633.597 kb on + strand, within LRK53_RS11825at 2633.597 kb on + strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2633.598 kb on - strand, within LRK53_RS11825at 2634.463 kb on + strandat 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.840 kb on + strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.841 kb on - strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.960 kb on + strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2634.961 kb on - strand, within LRK53_RS11830at 2635.116 kb on + strand, within LRK53_RS11830at 2635.116 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.497 kb on + strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830at 2635.498 kb on - strand, within LRK53_RS11830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
remove
2,632,300 + LRK53_RS11820 0.46 +0.4
2,632,360 + LRK53_RS11820 0.51 +1.2
2,632,360 + LRK53_RS11820 0.51 -0.8
2,632,361 - LRK53_RS11820 0.51 +0.2
2,632,361 - LRK53_RS11820 0.51 -2.4
2,632,361 - LRK53_RS11820 0.51 +0.3
2,632,381 + LRK53_RS11820 0.52 +0.6
2,632,381 + LRK53_RS11820 0.52 -1.5
2,632,382 - LRK53_RS11820 0.52 -2.0
2,632,382 - LRK53_RS11820 0.52 -0.6
2,632,382 - LRK53_RS11820 0.52 +0.9
2,632,681 + LRK53_RS11820 0.72 +1.7
2,632,681 + LRK53_RS11820 0.72 +1.2
2,632,681 + LRK53_RS11820 0.72 -1.9
2,632,681 + LRK53_RS11820 0.72 -0.7
2,633,145 + -1.1
2,633,159 + -2.7
2,633,159 + +1.4
2,633,159 + +0.5
2,633,160 - -0.6
2,633,173 + -0.8
2,633,174 - +0.1
2,633,327 + LRK53_RS11825 0.11 -1.8
2,633,328 - LRK53_RS11825 0.11 -1.9
2,633,328 - LRK53_RS11825 0.11 -0.8
2,633,328 - LRK53_RS11825 0.11 +0.2
2,633,450 + LRK53_RS11825 0.20 +0.6
2,633,451 - LRK53_RS11825 0.21 +1.9
2,633,451 - LRK53_RS11825 0.21 -0.1
2,633,486 + LRK53_RS11825 0.23 -1.1
2,633,486 + LRK53_RS11825 0.23 -0.4
2,633,486 + LRK53_RS11825 0.23 -0.6
2,633,486 + LRK53_RS11825 0.23 -1.0
2,633,487 - LRK53_RS11825 0.23 -1.0
2,633,487 - LRK53_RS11825 0.23 -1.0
2,633,597 + LRK53_RS11825 0.31 -2.5
2,633,597 + LRK53_RS11825 0.31 -0.4
2,633,598 - LRK53_RS11825 0.31 +0.6
2,633,598 - LRK53_RS11825 0.31 +1.6
2,633,598 - LRK53_RS11825 0.31 -0.6
2,633,598 - LRK53_RS11825 0.31 +0.5
2,634,463 + -0.3
2,634,840 + LRK53_RS11830 0.15 -0.4
2,634,840 + LRK53_RS11830 0.15 -0.4
2,634,840 + LRK53_RS11830 0.15 -0.5
2,634,840 + LRK53_RS11830 0.15 -0.7
2,634,840 + LRK53_RS11830 0.15 -1.0
2,634,840 + LRK53_RS11830 0.15 -0.6
2,634,840 + LRK53_RS11830 0.15 +1.0
2,634,840 + LRK53_RS11830 0.15 +0.0
2,634,841 - LRK53_RS11830 0.15 +1.7
2,634,841 - LRK53_RS11830 0.15 -0.3
2,634,841 - LRK53_RS11830 0.15 +1.0
2,634,841 - LRK53_RS11830 0.15 -1.1
2,634,841 - LRK53_RS11830 0.15 +0.8
2,634,841 - LRK53_RS11830 0.15 -0.8
2,634,841 - LRK53_RS11830 0.15 -1.0
2,634,841 - LRK53_RS11830 0.15 +0.2
2,634,960 + LRK53_RS11830 0.22 -1.6
2,634,960 + LRK53_RS11830 0.22 -0.1
2,634,960 + LRK53_RS11830 0.22 -0.4
2,634,960 + LRK53_RS11830 0.22 +2.4
2,634,960 + LRK53_RS11830 0.22 -0.7
2,634,960 + LRK53_RS11830 0.22 -0.3
2,634,960 + LRK53_RS11830 0.22 -1.3
2,634,961 - LRK53_RS11830 0.23 -0.0
2,634,961 - LRK53_RS11830 0.23 -1.0
2,634,961 - LRK53_RS11830 0.23 +0.4
2,634,961 - LRK53_RS11830 0.23 -0.1
2,634,961 - LRK53_RS11830 0.23 -0.4
2,634,961 - LRK53_RS11830 0.23 -1.3
2,634,961 - LRK53_RS11830 0.23 +0.3
2,635,116 + LRK53_RS11830 0.32 +0.2
2,635,116 + LRK53_RS11830 0.32 +0.0
2,635,497 + LRK53_RS11830 0.55 -0.2
2,635,497 + LRK53_RS11830 0.55 -0.7
2,635,497 + LRK53_RS11830 0.55 -1.0
2,635,498 - LRK53_RS11830 0.55 -0.6
2,635,498 - LRK53_RS11830 0.55 -0.0
2,635,498 - LRK53_RS11830 0.55 -0.6
2,635,498 - LRK53_RS11830 0.55 -0.6

Or see this region's nucleotide sequence