Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11820 and LRK53_RS11825 are separated by 88 nucleotides LRK53_RS11825 and LRK53_RS11830 are separated by 67 nucleotides
LRK53_RS11820: LRK53_RS11820 - phospholipase D-like domain-containing protein, at 2,631,619 to 2,633,085
_RS11820
LRK53_RS11825: LRK53_RS11825 - exodeoxyribonuclease VII large subunit, at 2,633,174 to 2,634,523
_RS11825
LRK53_RS11830: LRK53_RS11830 - acetolactate synthase large subunit, at 2,634,591 to 2,636,234
_RS11830
Position (kb)
2633
2634
2635 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2632.300 kb on + strand, within LRK53_RS11820 at 2632.360 kb on + strand, within LRK53_RS11820 at 2632.360 kb on + strand, within LRK53_RS11820 at 2632.361 kb on - strand, within LRK53_RS11820 at 2632.361 kb on - strand, within LRK53_RS11820 at 2632.361 kb on - strand, within LRK53_RS11820 at 2632.381 kb on + strand, within LRK53_RS11820 at 2632.381 kb on + strand, within LRK53_RS11820 at 2632.382 kb on - strand, within LRK53_RS11820 at 2632.382 kb on - strand, within LRK53_RS11820 at 2632.382 kb on - strand, within LRK53_RS11820 at 2632.681 kb on + strand, within LRK53_RS11820 at 2632.681 kb on + strand, within LRK53_RS11820 at 2632.681 kb on + strand, within LRK53_RS11820 at 2632.681 kb on + strand, within LRK53_RS11820 at 2633.145 kb on + strand at 2633.159 kb on + strand at 2633.159 kb on + strand at 2633.159 kb on + strand at 2633.160 kb on - strand at 2633.173 kb on + strand at 2633.174 kb on - strand at 2633.327 kb on + strand, within LRK53_RS11825 at 2633.328 kb on - strand, within LRK53_RS11825 at 2633.328 kb on - strand, within LRK53_RS11825 at 2633.328 kb on - strand, within LRK53_RS11825 at 2633.450 kb on + strand, within LRK53_RS11825 at 2633.451 kb on - strand, within LRK53_RS11825 at 2633.451 kb on - strand, within LRK53_RS11825 at 2633.486 kb on + strand, within LRK53_RS11825 at 2633.486 kb on + strand, within LRK53_RS11825 at 2633.486 kb on + strand, within LRK53_RS11825 at 2633.486 kb on + strand, within LRK53_RS11825 at 2633.487 kb on - strand, within LRK53_RS11825 at 2633.487 kb on - strand, within LRK53_RS11825 at 2633.597 kb on + strand, within LRK53_RS11825 at 2633.597 kb on + strand, within LRK53_RS11825 at 2633.598 kb on - strand, within LRK53_RS11825 at 2633.598 kb on - strand, within LRK53_RS11825 at 2633.598 kb on - strand, within LRK53_RS11825 at 2633.598 kb on - strand, within LRK53_RS11825 at 2634.463 kb on + strand at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.840 kb on + strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.841 kb on - strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.960 kb on + strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2634.961 kb on - strand, within LRK53_RS11830 at 2635.116 kb on + strand, within LRK53_RS11830 at 2635.116 kb on + strand, within LRK53_RS11830 at 2635.497 kb on + strand, within LRK53_RS11830 at 2635.497 kb on + strand, within LRK53_RS11830 at 2635.497 kb on + strand, within LRK53_RS11830 at 2635.498 kb on - strand, within LRK53_RS11830 at 2635.498 kb on - strand, within LRK53_RS11830 at 2635.498 kb on - strand, within LRK53_RS11830 at 2635.498 kb on - strand, within LRK53_RS11830
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 2,632,300 + LRK53_RS11820 0.46 +0.4 2,632,360 + LRK53_RS11820 0.51 +1.2 2,632,360 + LRK53_RS11820 0.51 -0.8 2,632,361 - LRK53_RS11820 0.51 +0.2 2,632,361 - LRK53_RS11820 0.51 -2.4 2,632,361 - LRK53_RS11820 0.51 +0.3 2,632,381 + LRK53_RS11820 0.52 +0.6 2,632,381 + LRK53_RS11820 0.52 -1.5 2,632,382 - LRK53_RS11820 0.52 -2.0 2,632,382 - LRK53_RS11820 0.52 -0.6 2,632,382 - LRK53_RS11820 0.52 +0.9 2,632,681 + LRK53_RS11820 0.72 +1.7 2,632,681 + LRK53_RS11820 0.72 +1.2 2,632,681 + LRK53_RS11820 0.72 -1.9 2,632,681 + LRK53_RS11820 0.72 -0.7 2,633,145 + -1.1 2,633,159 + -2.7 2,633,159 + +1.4 2,633,159 + +0.5 2,633,160 - -0.6 2,633,173 + -0.8 2,633,174 - +0.1 2,633,327 + LRK53_RS11825 0.11 -1.8 2,633,328 - LRK53_RS11825 0.11 -1.9 2,633,328 - LRK53_RS11825 0.11 -0.8 2,633,328 - LRK53_RS11825 0.11 +0.2 2,633,450 + LRK53_RS11825 0.20 +0.6 2,633,451 - LRK53_RS11825 0.21 +1.9 2,633,451 - LRK53_RS11825 0.21 -0.1 2,633,486 + LRK53_RS11825 0.23 -1.1 2,633,486 + LRK53_RS11825 0.23 -0.4 2,633,486 + LRK53_RS11825 0.23 -0.6 2,633,486 + LRK53_RS11825 0.23 -1.0 2,633,487 - LRK53_RS11825 0.23 -1.0 2,633,487 - LRK53_RS11825 0.23 -1.0 2,633,597 + LRK53_RS11825 0.31 -2.5 2,633,597 + LRK53_RS11825 0.31 -0.4 2,633,598 - LRK53_RS11825 0.31 +0.6 2,633,598 - LRK53_RS11825 0.31 +1.6 2,633,598 - LRK53_RS11825 0.31 -0.6 2,633,598 - LRK53_RS11825 0.31 +0.5 2,634,463 + -0.3 2,634,840 + LRK53_RS11830 0.15 -0.4 2,634,840 + LRK53_RS11830 0.15 -0.4 2,634,840 + LRK53_RS11830 0.15 -0.5 2,634,840 + LRK53_RS11830 0.15 -0.7 2,634,840 + LRK53_RS11830 0.15 -1.0 2,634,840 + LRK53_RS11830 0.15 -0.6 2,634,840 + LRK53_RS11830 0.15 +1.0 2,634,840 + LRK53_RS11830 0.15 +0.0 2,634,841 - LRK53_RS11830 0.15 +1.7 2,634,841 - LRK53_RS11830 0.15 -0.3 2,634,841 - LRK53_RS11830 0.15 +1.0 2,634,841 - LRK53_RS11830 0.15 -1.1 2,634,841 - LRK53_RS11830 0.15 +0.8 2,634,841 - LRK53_RS11830 0.15 -0.8 2,634,841 - LRK53_RS11830 0.15 -1.0 2,634,841 - LRK53_RS11830 0.15 +0.2 2,634,960 + LRK53_RS11830 0.22 -1.6 2,634,960 + LRK53_RS11830 0.22 -0.1 2,634,960 + LRK53_RS11830 0.22 -0.4 2,634,960 + LRK53_RS11830 0.22 +2.4 2,634,960 + LRK53_RS11830 0.22 -0.7 2,634,960 + LRK53_RS11830 0.22 -0.3 2,634,960 + LRK53_RS11830 0.22 -1.3 2,634,961 - LRK53_RS11830 0.23 -0.0 2,634,961 - LRK53_RS11830 0.23 -1.0 2,634,961 - LRK53_RS11830 0.23 +0.4 2,634,961 - LRK53_RS11830 0.23 -0.1 2,634,961 - LRK53_RS11830 0.23 -0.4 2,634,961 - LRK53_RS11830 0.23 -1.3 2,634,961 - LRK53_RS11830 0.23 +0.3 2,635,116 + LRK53_RS11830 0.32 +0.2 2,635,116 + LRK53_RS11830 0.32 +0.0 2,635,497 + LRK53_RS11830 0.55 -0.2 2,635,497 + LRK53_RS11830 0.55 -0.7 2,635,497 + LRK53_RS11830 0.55 -1.0 2,635,498 - LRK53_RS11830 0.55 -0.6 2,635,498 - LRK53_RS11830 0.55 -0.0 2,635,498 - LRK53_RS11830 0.55 -0.6 2,635,498 - LRK53_RS11830 0.55 -0.6
Or see this region's nucleotide sequence