Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11190

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11185 and LRK53_RS11190 are separated by 50 nucleotidesLRK53_RS11190 and LRK53_RS11195 overlap by 11 nucleotides LRK53_RS11185: LRK53_RS11185 - DUF4115 domain-containing protein, at 2,496,350 to 2,497,285 _RS11185 LRK53_RS11190: LRK53_RS11190 - type IV pilus biogenesis/stability protein PilW, at 2,497,336 to 2,498,124 _RS11190 LRK53_RS11195: LRK53_RS11195 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,498,114 to 2,499,244 _RS11195 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -2 -1 0 1at 2496.710 kb on + strand, within LRK53_RS11185at 2497.460 kb on - strand, within LRK53_RS11190at 2497.545 kb on - strand, within LRK53_RS11190at 2497.860 kb on - strand, within LRK53_RS11190at 2497.962 kb on - strand, within LRK53_RS11190at 2497.962 kb on - strand, within LRK53_RS11190

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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2,496,710 + LRK53_RS11185 0.38 -1.5
2,497,460 - LRK53_RS11190 0.16 -0.0
2,497,545 - LRK53_RS11190 0.26 -0.5
2,497,860 - LRK53_RS11190 0.66 -0.5
2,497,962 - LRK53_RS11190 0.79 -1.6
2,497,962 - LRK53_RS11190 0.79 -1.9

Or see this region's nucleotide sequence