Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11185

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11175 and LRK53_RS11180 overlap by 4 nucleotidesLRK53_RS11180 and LRK53_RS11185 are separated by 151 nucleotidesLRK53_RS11185 and LRK53_RS11190 are separated by 50 nucleotidesLRK53_RS11190 and LRK53_RS11195 overlap by 11 nucleotides LRK53_RS11175: LRK53_RS11175 - outer membrane protein assembly factor BamB, at 2,494,340 to 2,495,551 _RS11175 LRK53_RS11180: LRK53_RS11180 - tetratricopeptide repeat protein, at 2,495,548 to 2,496,198 _RS11180 LRK53_RS11185: LRK53_RS11185 - DUF4115 domain-containing protein, at 2,496,350 to 2,497,285 _RS11185 LRK53_RS11190: LRK53_RS11190 - type IV pilus biogenesis/stability protein PilW, at 2,497,336 to 2,498,124 _RS11190 LRK53_RS11195: LRK53_RS11195 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,498,114 to 2,499,244 _RS11195 Position (kb) 2496 2497 2498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2495.649 kb on - strand, within LRK53_RS11180at 2495.649 kb on - strand, within LRK53_RS11180at 2495.690 kb on - strand, within LRK53_RS11180at 2495.690 kb on - strand, within LRK53_RS11180at 2495.723 kb on + strand, within LRK53_RS11180at 2495.723 kb on + strand, within LRK53_RS11180at 2495.723 kb on + strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.724 kb on - strand, within LRK53_RS11180at 2495.948 kb on + strand, within LRK53_RS11180at 2495.948 kb on + strand, within LRK53_RS11180at 2495.948 kb on + strand, within LRK53_RS11180at 2495.948 kb on + strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2495.949 kb on - strand, within LRK53_RS11180at 2496.026 kb on + strand, within LRK53_RS11180at 2496.026 kb on + strand, within LRK53_RS11180at 2496.026 kb on + strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.027 kb on - strand, within LRK53_RS11180at 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.173 kb on + strandat 2496.174 kb on - strandat 2496.174 kb on - strandat 2496.174 kb on - strandat 2496.174 kb on - strandat 2496.174 kb on - strandat 2496.182 kb on + strandat 2496.182 kb on + strandat 2496.182 kb on + strandat 2496.182 kb on + strandat 2496.182 kb on + strandat 2496.182 kb on + strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.183 kb on - strandat 2496.311 kb on + strandat 2496.312 kb on - strandat 2496.312 kb on - strandat 2496.319 kb on - strandat 2496.710 kb on + strand, within LRK53_RS11185at 2497.460 kb on - strand, within LRK53_RS11190at 2497.962 kb on - strand, within LRK53_RS11190at 2497.962 kb on - strand, within LRK53_RS11190

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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2,495,649 - LRK53_RS11180 0.16 -1.2
2,495,649 - LRK53_RS11180 0.16 -1.2
2,495,690 - LRK53_RS11180 0.22 -2.2
2,495,690 - LRK53_RS11180 0.22 -1.2
2,495,723 + LRK53_RS11180 0.27 -0.9
2,495,723 + LRK53_RS11180 0.27 +0.6
2,495,723 + LRK53_RS11180 0.27 +0.5
2,495,724 - LRK53_RS11180 0.27 -1.8
2,495,724 - LRK53_RS11180 0.27 -0.6
2,495,724 - LRK53_RS11180 0.27 +2.2
2,495,724 - LRK53_RS11180 0.27 -1.2
2,495,724 - LRK53_RS11180 0.27 -2.6
2,495,724 - LRK53_RS11180 0.27 +1.0
2,495,724 - LRK53_RS11180 0.27 +0.1
2,495,724 - LRK53_RS11180 0.27 -1.3
2,495,724 - LRK53_RS11180 0.27 -0.0
2,495,724 - LRK53_RS11180 0.27 -0.2
2,495,724 - LRK53_RS11180 0.27 -0.5
2,495,724 - LRK53_RS11180 0.27 -1.6
2,495,724 - LRK53_RS11180 0.27 -0.3
2,495,724 - LRK53_RS11180 0.27 +0.5
2,495,948 + LRK53_RS11180 0.61 -1.6
2,495,948 + LRK53_RS11180 0.61 -1.9
2,495,948 + LRK53_RS11180 0.61 +0.1
2,495,948 + LRK53_RS11180 0.61 +1.0
2,495,949 - LRK53_RS11180 0.62 -0.7
2,495,949 - LRK53_RS11180 0.62 -1.3
2,495,949 - LRK53_RS11180 0.62 -2.0
2,495,949 - LRK53_RS11180 0.62 +1.6
2,495,949 - LRK53_RS11180 0.62 -1.3
2,495,949 - LRK53_RS11180 0.62 -1.9
2,495,949 - LRK53_RS11180 0.62 -2.0
2,495,949 - LRK53_RS11180 0.62 -1.6
2,495,949 - LRK53_RS11180 0.62 +0.1
2,496,026 + LRK53_RS11180 0.73 +1.6
2,496,026 + LRK53_RS11180 0.73 -1.3
2,496,026 + LRK53_RS11180 0.73 +3.1
2,496,027 - LRK53_RS11180 0.74 +0.1
2,496,027 - LRK53_RS11180 0.74 -0.1
2,496,027 - LRK53_RS11180 0.74 -1.9
2,496,027 - LRK53_RS11180 0.74 +0.2
2,496,027 - LRK53_RS11180 0.74 +1.9
2,496,027 - LRK53_RS11180 0.74 +1.7
2,496,027 - LRK53_RS11180 0.74 -0.5
2,496,027 - LRK53_RS11180 0.74 +0.4
2,496,027 - LRK53_RS11180 0.74 -1.6
2,496,027 - LRK53_RS11180 0.74 -1.8
2,496,027 - LRK53_RS11180 0.74 -0.7
2,496,027 - LRK53_RS11180 0.74 -1.6
2,496,027 - LRK53_RS11180 0.74 +0.0
2,496,027 - LRK53_RS11180 0.74 -1.8
2,496,027 - LRK53_RS11180 0.74 +0.3
2,496,027 - LRK53_RS11180 0.74 -0.9
2,496,173 + +0.9
2,496,173 + -1.8
2,496,173 + -1.6
2,496,173 + +0.1
2,496,173 + -1.2
2,496,173 + -0.5
2,496,173 + -0.9
2,496,173 + +0.8
2,496,174 - -0.2
2,496,174 - -2.3
2,496,174 - -0.9
2,496,174 - +1.3
2,496,174 - -2.8
2,496,182 + +0.1
2,496,182 + -0.4
2,496,182 + -1.3
2,496,182 + -0.9
2,496,182 + -1.3
2,496,182 + +0.1
2,496,183 - +1.1
2,496,183 - +0.7
2,496,183 - +0.1
2,496,183 - -0.3
2,496,183 - -1.8
2,496,183 - -1.6
2,496,183 - +0.5
2,496,183 - +0.4
2,496,311 + -0.2
2,496,312 - -0.9
2,496,312 - -0.9
2,496,319 - -0.6
2,496,710 + LRK53_RS11185 0.38 -1.5
2,497,460 - LRK53_RS11190 0.16 -0.0
2,497,962 - LRK53_RS11190 0.79 -1.6
2,497,962 - LRK53_RS11190 0.79 -1.9

Or see this region's nucleotide sequence