Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11175 and LRK53_RS11180 overlap by 4 nucleotides LRK53_RS11180 and LRK53_RS11185 are separated by 151 nucleotides LRK53_RS11185 and LRK53_RS11190 are separated by 50 nucleotides LRK53_RS11190 and LRK53_RS11195 overlap by 11 nucleotides
LRK53_RS11175: LRK53_RS11175 - outer membrane protein assembly factor BamB, at 2,494,340 to 2,495,551
_RS11175
LRK53_RS11180: LRK53_RS11180 - tetratricopeptide repeat protein, at 2,495,548 to 2,496,198
_RS11180
LRK53_RS11185: LRK53_RS11185 - DUF4115 domain-containing protein, at 2,496,350 to 2,497,285
_RS11185
LRK53_RS11190: LRK53_RS11190 - type IV pilus biogenesis/stability protein PilW, at 2,497,336 to 2,498,124
_RS11190
LRK53_RS11195: LRK53_RS11195 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,498,114 to 2,499,244
_RS11195
Position (kb)
2496
2497
2498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2495.649 kb on - strand, within LRK53_RS11180 at 2495.649 kb on - strand, within LRK53_RS11180 at 2495.690 kb on - strand, within LRK53_RS11180 at 2495.690 kb on - strand, within LRK53_RS11180 at 2495.723 kb on + strand, within LRK53_RS11180 at 2495.723 kb on + strand, within LRK53_RS11180 at 2495.723 kb on + strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.724 kb on - strand, within LRK53_RS11180 at 2495.948 kb on + strand, within LRK53_RS11180 at 2495.948 kb on + strand, within LRK53_RS11180 at 2495.948 kb on + strand, within LRK53_RS11180 at 2495.948 kb on + strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2495.949 kb on - strand, within LRK53_RS11180 at 2496.026 kb on + strand, within LRK53_RS11180 at 2496.026 kb on + strand, within LRK53_RS11180 at 2496.026 kb on + strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.027 kb on - strand, within LRK53_RS11180 at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.173 kb on + strand at 2496.174 kb on - strand at 2496.174 kb on - strand at 2496.174 kb on - strand at 2496.174 kb on - strand at 2496.174 kb on - strand at 2496.182 kb on + strand at 2496.182 kb on + strand at 2496.182 kb on + strand at 2496.182 kb on + strand at 2496.182 kb on + strand at 2496.182 kb on + strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.183 kb on - strand at 2496.311 kb on + strand at 2496.312 kb on - strand at 2496.312 kb on - strand at 2496.319 kb on - strand at 2496.710 kb on + strand, within LRK53_RS11185 at 2497.460 kb on - strand, within LRK53_RS11190 at 2497.962 kb on - strand, within LRK53_RS11190 at 2497.962 kb on - strand, within LRK53_RS11190
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 2,495,649 - LRK53_RS11180 0.16 -1.2 2,495,649 - LRK53_RS11180 0.16 -1.2 2,495,690 - LRK53_RS11180 0.22 -2.2 2,495,690 - LRK53_RS11180 0.22 -1.2 2,495,723 + LRK53_RS11180 0.27 -0.9 2,495,723 + LRK53_RS11180 0.27 +0.6 2,495,723 + LRK53_RS11180 0.27 +0.5 2,495,724 - LRK53_RS11180 0.27 -1.8 2,495,724 - LRK53_RS11180 0.27 -0.6 2,495,724 - LRK53_RS11180 0.27 +2.2 2,495,724 - LRK53_RS11180 0.27 -1.2 2,495,724 - LRK53_RS11180 0.27 -2.6 2,495,724 - LRK53_RS11180 0.27 +1.0 2,495,724 - LRK53_RS11180 0.27 +0.1 2,495,724 - LRK53_RS11180 0.27 -1.3 2,495,724 - LRK53_RS11180 0.27 -0.0 2,495,724 - LRK53_RS11180 0.27 -0.2 2,495,724 - LRK53_RS11180 0.27 -0.5 2,495,724 - LRK53_RS11180 0.27 -1.6 2,495,724 - LRK53_RS11180 0.27 -0.3 2,495,724 - LRK53_RS11180 0.27 +0.5 2,495,948 + LRK53_RS11180 0.61 -1.6 2,495,948 + LRK53_RS11180 0.61 -1.9 2,495,948 + LRK53_RS11180 0.61 +0.1 2,495,948 + LRK53_RS11180 0.61 +1.0 2,495,949 - LRK53_RS11180 0.62 -0.7 2,495,949 - LRK53_RS11180 0.62 -1.3 2,495,949 - LRK53_RS11180 0.62 -2.0 2,495,949 - LRK53_RS11180 0.62 +1.6 2,495,949 - LRK53_RS11180 0.62 -1.3 2,495,949 - LRK53_RS11180 0.62 -1.9 2,495,949 - LRK53_RS11180 0.62 -2.0 2,495,949 - LRK53_RS11180 0.62 -1.6 2,495,949 - LRK53_RS11180 0.62 +0.1 2,496,026 + LRK53_RS11180 0.73 +1.6 2,496,026 + LRK53_RS11180 0.73 -1.3 2,496,026 + LRK53_RS11180 0.73 +3.1 2,496,027 - LRK53_RS11180 0.74 +0.1 2,496,027 - LRK53_RS11180 0.74 -0.1 2,496,027 - LRK53_RS11180 0.74 -1.9 2,496,027 - LRK53_RS11180 0.74 +0.2 2,496,027 - LRK53_RS11180 0.74 +1.9 2,496,027 - LRK53_RS11180 0.74 +1.7 2,496,027 - LRK53_RS11180 0.74 -0.5 2,496,027 - LRK53_RS11180 0.74 +0.4 2,496,027 - LRK53_RS11180 0.74 -1.6 2,496,027 - LRK53_RS11180 0.74 -1.8 2,496,027 - LRK53_RS11180 0.74 -0.7 2,496,027 - LRK53_RS11180 0.74 -1.6 2,496,027 - LRK53_RS11180 0.74 +0.0 2,496,027 - LRK53_RS11180 0.74 -1.8 2,496,027 - LRK53_RS11180 0.74 +0.3 2,496,027 - LRK53_RS11180 0.74 -0.9 2,496,173 + +0.9 2,496,173 + -1.8 2,496,173 + -1.6 2,496,173 + +0.1 2,496,173 + -1.2 2,496,173 + -0.5 2,496,173 + -0.9 2,496,173 + +0.8 2,496,174 - -0.2 2,496,174 - -2.3 2,496,174 - -0.9 2,496,174 - +1.3 2,496,174 - -2.8 2,496,182 + +0.1 2,496,182 + -0.4 2,496,182 + -1.3 2,496,182 + -0.9 2,496,182 + -1.3 2,496,182 + +0.1 2,496,183 - +1.1 2,496,183 - +0.7 2,496,183 - +0.1 2,496,183 - -0.3 2,496,183 - -1.8 2,496,183 - -1.6 2,496,183 - +0.5 2,496,183 - +0.4 2,496,311 + -0.2 2,496,312 - -0.9 2,496,312 - -0.9 2,496,319 - -0.6 2,496,710 + LRK53_RS11185 0.38 -1.5 2,497,460 - LRK53_RS11190 0.16 -0.0 2,497,962 - LRK53_RS11190 0.79 -1.6 2,497,962 - LRK53_RS11190 0.79 -1.9
Or see this region's nucleotide sequence