Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09120

Experiment: Biofilm; Day4; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS09115 and LRK53_RS09120 are separated by 46 nucleotidesLRK53_RS09120 and LRK53_RS09125 are separated by 142 nucleotidesLRK53_RS09125 and LRK53_RS09130 are separated by 96 nucleotides LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587 _RS09115 LRK53_RS09120: LRK53_RS09120 - peroxiredoxin, at 2,040,634 to 2,041,116 _RS09120 LRK53_RS09125: LRK53_RS09125 - Hsp20/alpha crystallin family protein, at 2,041,259 to 2,041,717 _RS09125 LRK53_RS09130: LRK53_RS09130 - DnaJ domain-containing protein, at 2,041,814 to 2,042,707 _RS09130 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2040.585 kb on + strandat 2040.585 kb on + strandat 2040.586 kb on - strandat 2040.586 kb on - strandat 2040.586 kb on - strandat 2040.586 kb on - strandat 2040.645 kb on + strandat 2040.715 kb on + strand, within LRK53_RS09120at 2040.715 kb on + strand, within LRK53_RS09120at 2040.716 kb on - strand, within LRK53_RS09120at 2040.716 kb on - strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.731 kb on + strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.732 kb on - strand, within LRK53_RS09120at 2040.881 kb on + strand, within LRK53_RS09120at 2040.881 kb on + strand, within LRK53_RS09120at 2040.881 kb on + strand, within LRK53_RS09120at 2040.881 kb on + strand, within LRK53_RS09120at 2040.881 kb on + strand, within LRK53_RS09120at 2040.882 kb on - strand, within LRK53_RS09120at 2040.882 kb on - strand, within LRK53_RS09120at 2040.882 kb on - strand, within LRK53_RS09120at 2040.882 kb on - strand, within LRK53_RS09120at 2040.939 kb on - strand, within LRK53_RS09120at 2041.152 kb on + strandat 2041.153 kb on - strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.252 kb on + strandat 2041.253 kb on - strandat 2041.253 kb on - strandat 2041.253 kb on - strandat 2041.253 kb on - strandat 2041.253 kb on - strandat 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.436 kb on + strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.437 kb on - strand, within LRK53_RS09125at 2041.580 kb on + strand, within LRK53_RS09125at 2041.580 kb on + strand, within LRK53_RS09125at 2041.732 kb on + strandat 2041.732 kb on + strandat 2041.829 kb on + strandat 2042.007 kb on - strand, within LRK53_RS09130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
remove
2,040,585 + +0.0
2,040,585 + -0.9
2,040,586 - +0.7
2,040,586 - -0.0
2,040,586 - -1.3
2,040,586 - -1.0
2,040,645 + -0.4
2,040,715 + LRK53_RS09120 0.17 +0.1
2,040,715 + LRK53_RS09120 0.17 -0.8
2,040,716 - LRK53_RS09120 0.17 -2.4
2,040,716 - LRK53_RS09120 0.17 +0.3
2,040,731 + LRK53_RS09120 0.20 -1.0
2,040,731 + LRK53_RS09120 0.20 -1.0
2,040,731 + LRK53_RS09120 0.20 -0.8
2,040,731 + LRK53_RS09120 0.20 +0.1
2,040,731 + LRK53_RS09120 0.20 -1.9
2,040,731 + LRK53_RS09120 0.20 -0.8
2,040,731 + LRK53_RS09120 0.20 +0.8
2,040,731 + LRK53_RS09120 0.20 -0.7
2,040,731 + LRK53_RS09120 0.20 -0.6
2,040,731 + LRK53_RS09120 0.20 -1.7
2,040,731 + LRK53_RS09120 0.20 -0.8
2,040,731 + LRK53_RS09120 0.20 -1.3
2,040,731 + LRK53_RS09120 0.20 -1.5
2,040,731 + LRK53_RS09120 0.20 -0.4
2,040,731 + LRK53_RS09120 0.20 -0.7
2,040,732 - LRK53_RS09120 0.20 -0.7
2,040,732 - LRK53_RS09120 0.20 -2.8
2,040,732 - LRK53_RS09120 0.20 -1.5
2,040,732 - LRK53_RS09120 0.20 -0.9
2,040,732 - LRK53_RS09120 0.20 +1.0
2,040,732 - LRK53_RS09120 0.20 -0.8
2,040,732 - LRK53_RS09120 0.20 -3.1
2,040,732 - LRK53_RS09120 0.20 -0.4
2,040,881 + LRK53_RS09120 0.51 -0.7
2,040,881 + LRK53_RS09120 0.51 -2.5
2,040,881 + LRK53_RS09120 0.51 -3.0
2,040,881 + LRK53_RS09120 0.51 -0.8
2,040,881 + LRK53_RS09120 0.51 -0.8
2,040,882 - LRK53_RS09120 0.51 -0.7
2,040,882 - LRK53_RS09120 0.51 -0.7
2,040,882 - LRK53_RS09120 0.51 +0.3
2,040,882 - LRK53_RS09120 0.51 +0.7
2,040,939 - LRK53_RS09120 0.63 -1.8
2,041,152 + -0.7
2,041,153 - +0.2
2,041,252 + -1.7
2,041,252 + -1.8
2,041,252 + -1.5
2,041,252 + -0.3
2,041,252 + -0.7
2,041,252 + +1.4
2,041,252 + +0.3
2,041,252 + -1.9
2,041,252 + -1.0
2,041,253 - -0.8
2,041,253 - -1.5
2,041,253 - -0.4
2,041,253 - -0.7
2,041,253 - -1.1
2,041,436 + LRK53_RS09125 0.39 +1.2
2,041,436 + LRK53_RS09125 0.39 -0.4
2,041,436 + LRK53_RS09125 0.39 -0.1
2,041,436 + LRK53_RS09125 0.39 -2.4
2,041,436 + LRK53_RS09125 0.39 +0.3
2,041,436 + LRK53_RS09125 0.39 -0.0
2,041,436 + LRK53_RS09125 0.39 -0.7
2,041,436 + LRK53_RS09125 0.39 -0.0
2,041,436 + LRK53_RS09125 0.39 -1.0
2,041,436 + LRK53_RS09125 0.39 +0.3
2,041,436 + LRK53_RS09125 0.39 +0.6
2,041,436 + LRK53_RS09125 0.39 -1.0
2,041,436 + LRK53_RS09125 0.39 -0.7
2,041,437 - LRK53_RS09125 0.39 -3.7
2,041,437 - LRK53_RS09125 0.39 -0.1
2,041,437 - LRK53_RS09125 0.39 -0.3
2,041,437 - LRK53_RS09125 0.39 -2.7
2,041,437 - LRK53_RS09125 0.39 -2.0
2,041,437 - LRK53_RS09125 0.39 -1.2
2,041,580 + LRK53_RS09125 0.70 +0.8
2,041,580 + LRK53_RS09125 0.70 -0.7
2,041,732 + -0.7
2,041,732 + -1.4
2,041,829 + -1.8
2,042,007 - LRK53_RS09130 0.22 +2.2

Or see this region's nucleotide sequence