Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09115 and LRK53_RS09120 are separated by 46 nucleotides LRK53_RS09120 and LRK53_RS09125 are separated by 142 nucleotides LRK53_RS09125 and LRK53_RS09130 are separated by 96 nucleotides
LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587
_RS09115
LRK53_RS09120: LRK53_RS09120 - peroxiredoxin, at 2,040,634 to 2,041,116
_RS09120
LRK53_RS09125: LRK53_RS09125 - Hsp20/alpha crystallin family protein, at 2,041,259 to 2,041,717
_RS09125
LRK53_RS09130: LRK53_RS09130 - DnaJ domain-containing protein, at 2,041,814 to 2,042,707
_RS09130
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2040.585 kb on + strand at 2040.585 kb on + strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.645 kb on + strand at 2040.715 kb on + strand, within LRK53_RS09120 at 2040.715 kb on + strand, within LRK53_RS09120 at 2040.716 kb on - strand, within LRK53_RS09120 at 2040.716 kb on - strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.939 kb on - strand, within LRK53_RS09120 at 2041.152 kb on + strand at 2041.153 kb on - strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.580 kb on + strand, within LRK53_RS09125 at 2041.580 kb on + strand, within LRK53_RS09125 at 2041.732 kb on + strand at 2041.732 kb on + strand at 2041.829 kb on + strand at 2042.007 kb on - strand, within LRK53_RS09130
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 2,040,585 + +0.0 2,040,585 + -0.9 2,040,586 - +0.7 2,040,586 - -0.0 2,040,586 - -1.3 2,040,586 - -1.0 2,040,645 + -0.4 2,040,715 + LRK53_RS09120 0.17 +0.1 2,040,715 + LRK53_RS09120 0.17 -0.8 2,040,716 - LRK53_RS09120 0.17 -2.4 2,040,716 - LRK53_RS09120 0.17 +0.3 2,040,731 + LRK53_RS09120 0.20 -1.0 2,040,731 + LRK53_RS09120 0.20 -1.0 2,040,731 + LRK53_RS09120 0.20 -0.8 2,040,731 + LRK53_RS09120 0.20 +0.1 2,040,731 + LRK53_RS09120 0.20 -1.9 2,040,731 + LRK53_RS09120 0.20 -0.8 2,040,731 + LRK53_RS09120 0.20 +0.8 2,040,731 + LRK53_RS09120 0.20 -0.7 2,040,731 + LRK53_RS09120 0.20 -0.6 2,040,731 + LRK53_RS09120 0.20 -1.7 2,040,731 + LRK53_RS09120 0.20 -0.8 2,040,731 + LRK53_RS09120 0.20 -1.3 2,040,731 + LRK53_RS09120 0.20 -1.5 2,040,731 + LRK53_RS09120 0.20 -0.4 2,040,731 + LRK53_RS09120 0.20 -0.7 2,040,732 - LRK53_RS09120 0.20 -0.7 2,040,732 - LRK53_RS09120 0.20 -2.8 2,040,732 - LRK53_RS09120 0.20 -1.5 2,040,732 - LRK53_RS09120 0.20 -0.9 2,040,732 - LRK53_RS09120 0.20 +1.0 2,040,732 - LRK53_RS09120 0.20 -0.8 2,040,732 - LRK53_RS09120 0.20 -3.1 2,040,732 - LRK53_RS09120 0.20 -0.4 2,040,881 + LRK53_RS09120 0.51 -0.7 2,040,881 + LRK53_RS09120 0.51 -2.5 2,040,881 + LRK53_RS09120 0.51 -3.0 2,040,881 + LRK53_RS09120 0.51 -0.8 2,040,881 + LRK53_RS09120 0.51 -0.8 2,040,882 - LRK53_RS09120 0.51 -0.7 2,040,882 - LRK53_RS09120 0.51 -0.7 2,040,882 - LRK53_RS09120 0.51 +0.3 2,040,882 - LRK53_RS09120 0.51 +0.7 2,040,939 - LRK53_RS09120 0.63 -1.8 2,041,152 + -0.7 2,041,153 - +0.2 2,041,252 + -1.7 2,041,252 + -1.8 2,041,252 + -1.5 2,041,252 + -0.3 2,041,252 + -0.7 2,041,252 + +1.4 2,041,252 + +0.3 2,041,252 + -1.9 2,041,252 + -1.0 2,041,253 - -0.8 2,041,253 - -1.5 2,041,253 - -0.4 2,041,253 - -0.7 2,041,253 - -1.1 2,041,436 + LRK53_RS09125 0.39 +1.2 2,041,436 + LRK53_RS09125 0.39 -0.4 2,041,436 + LRK53_RS09125 0.39 -0.1 2,041,436 + LRK53_RS09125 0.39 -2.4 2,041,436 + LRK53_RS09125 0.39 +0.3 2,041,436 + LRK53_RS09125 0.39 -0.0 2,041,436 + LRK53_RS09125 0.39 -0.7 2,041,436 + LRK53_RS09125 0.39 -0.0 2,041,436 + LRK53_RS09125 0.39 -1.0 2,041,436 + LRK53_RS09125 0.39 +0.3 2,041,436 + LRK53_RS09125 0.39 +0.6 2,041,436 + LRK53_RS09125 0.39 -1.0 2,041,436 + LRK53_RS09125 0.39 -0.7 2,041,437 - LRK53_RS09125 0.39 -3.7 2,041,437 - LRK53_RS09125 0.39 -0.1 2,041,437 - LRK53_RS09125 0.39 -0.3 2,041,437 - LRK53_RS09125 0.39 -2.7 2,041,437 - LRK53_RS09125 0.39 -2.0 2,041,437 - LRK53_RS09125 0.39 -1.2 2,041,580 + LRK53_RS09125 0.70 +0.8 2,041,580 + LRK53_RS09125 0.70 -0.7 2,041,732 + -0.7 2,041,732 + -1.4 2,041,829 + -1.8 2,042,007 - LRK53_RS09130 0.22 +2.2
Or see this region's nucleotide sequence