Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08265

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08260 and LRK53_RS08265 are separated by 174 nucleotidesLRK53_RS08265 and LRK53_RS08270 are separated by 46 nucleotidesLRK53_RS08270 and LRK53_RS08275 overlap by 4 nucleotides LRK53_RS08260: LRK53_RS08260 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,857,247 to 1,858,584 _RS08260 LRK53_RS08265: LRK53_RS08265 - DUF3025 domain-containing protein, at 1,858,759 to 1,859,562 _RS08265 LRK53_RS08270: LRK53_RS08270 - transcription elongation factor GreB, at 1,859,609 to 1,860,115 _RS08270 LRK53_RS08275: LRK53_RS08275 - hypothetical protein, at 1,860,112 to 1,861,359 _RS08275 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1at 1857.833 kb on - strand, within LRK53_RS08260at 1857.850 kb on + strand, within LRK53_RS08260at 1857.850 kb on + strand, within LRK53_RS08260at 1857.851 kb on - strand, within LRK53_RS08260at 1857.851 kb on - strand, within LRK53_RS08260at 1857.851 kb on - strand, within LRK53_RS08260at 1857.851 kb on - strand, within LRK53_RS08260at 1857.851 kb on - strand, within LRK53_RS08260at 1857.880 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.946 kb on + strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.947 kb on - strand, within LRK53_RS08260at 1857.953 kb on - strand, within LRK53_RS08260at 1857.953 kb on - strand, within LRK53_RS08260at 1857.953 kb on - strand, within LRK53_RS08260at 1858.013 kb on - strand, within LRK53_RS08260at 1858.013 kb on - strand, within LRK53_RS08260at 1858.013 kb on - strand, within LRK53_RS08260at 1858.244 kb on - strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.334 kb on + strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.335 kb on - strand, within LRK53_RS08260at 1858.621 kb on + strandat 1858.622 kb on - strandat 1858.622 kb on - strandat 1858.679 kb on - strandat 1858.774 kb on + strandat 1858.774 kb on + strandat 1858.969 kb on + strand, within LRK53_RS08265at 1858.969 kb on + strand, within LRK53_RS08265at 1858.970 kb on - strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.000 kb on + strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.001 kb on - strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.140 kb on + strand, within LRK53_RS08265at 1859.141 kb on - strand, within LRK53_RS08265at 1859.518 kb on + strandat 1859.519 kb on - strandat 1859.519 kb on - strandat 1859.519 kb on - strandat 1859.898 kb on + strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.899 kb on - strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.940 kb on + strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.941 kb on - strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.946 kb on + strand, within LRK53_RS08270at 1859.947 kb on - strand, within LRK53_RS08270at 1859.947 kb on - strand, within LRK53_RS08270at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.260 kb on + strand, within LRK53_RS08275at 1860.261 kb on - strand, within LRK53_RS08275at 1860.263 kb on + strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.264 kb on - strand, within LRK53_RS08275at 1860.300 kb on - strand, within LRK53_RS08275at 1860.300 kb on - strand, within LRK53_RS08275

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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1,857,833 - LRK53_RS08260 0.44 -0.7
1,857,850 + LRK53_RS08260 0.45 -0.4
1,857,850 + LRK53_RS08260 0.45 +0.7
1,857,851 - LRK53_RS08260 0.45 -0.4
1,857,851 - LRK53_RS08260 0.45 -0.3
1,857,851 - LRK53_RS08260 0.45 -0.9
1,857,851 - LRK53_RS08260 0.45 -1.4
1,857,851 - LRK53_RS08260 0.45 -1.0
1,857,880 + LRK53_RS08260 0.47 -1.9
1,857,946 + LRK53_RS08260 0.52 +0.3
1,857,946 + LRK53_RS08260 0.52 -0.6
1,857,946 + LRK53_RS08260 0.52 +0.2
1,857,946 + LRK53_RS08260 0.52 -0.1
1,857,946 + LRK53_RS08260 0.52 +0.2
1,857,946 + LRK53_RS08260 0.52 +0.6
1,857,946 + LRK53_RS08260 0.52 +1.3
1,857,946 + LRK53_RS08260 0.52 -1.8
1,857,946 + LRK53_RS08260 0.52 -0.8
1,857,946 + LRK53_RS08260 0.52 -0.4
1,857,946 + LRK53_RS08260 0.52 -1.7
1,857,946 + LRK53_RS08260 0.52 +1.0
1,857,946 + LRK53_RS08260 0.52 -0.6
1,857,946 + LRK53_RS08260 0.52 +0.0
1,857,947 - LRK53_RS08260 0.52 -0.0
1,857,947 - LRK53_RS08260 0.52 -2.0
1,857,947 - LRK53_RS08260 0.52 -0.1
1,857,947 - LRK53_RS08260 0.52 -0.3
1,857,947 - LRK53_RS08260 0.52 -0.2
1,857,947 - LRK53_RS08260 0.52 -0.8
1,857,947 - LRK53_RS08260 0.52 -1.5
1,857,947 - LRK53_RS08260 0.52 -0.1
1,857,947 - LRK53_RS08260 0.52 +0.7
1,857,947 - LRK53_RS08260 0.52 +1.4
1,857,947 - LRK53_RS08260 0.52 -0.2
1,857,947 - LRK53_RS08260 0.52 +1.0
1,857,947 - LRK53_RS08260 0.52 -2.4
1,857,947 - LRK53_RS08260 0.52 +1.0
1,857,953 - LRK53_RS08260 0.53 -0.7
1,857,953 - LRK53_RS08260 0.53 -1.3
1,857,953 - LRK53_RS08260 0.53 +0.2
1,858,013 - LRK53_RS08260 0.57 -1.2
1,858,013 - LRK53_RS08260 0.57 +0.4
1,858,013 - LRK53_RS08260 0.57 -1.3
1,858,244 - LRK53_RS08260 0.75 -0.6
1,858,334 + LRK53_RS08260 0.81 +0.8
1,858,334 + LRK53_RS08260 0.81 -0.6
1,858,334 + LRK53_RS08260 0.81 -1.2
1,858,334 + LRK53_RS08260 0.81 -1.0
1,858,334 + LRK53_RS08260 0.81 -1.1
1,858,334 + LRK53_RS08260 0.81 +1.6
1,858,335 - LRK53_RS08260 0.81 -0.6
1,858,335 - LRK53_RS08260 0.81 -0.3
1,858,335 - LRK53_RS08260 0.81 -1.6
1,858,335 - LRK53_RS08260 0.81 -1.5
1,858,335 - LRK53_RS08260 0.81 -1.4
1,858,335 - LRK53_RS08260 0.81 -0.7
1,858,335 - LRK53_RS08260 0.81 +0.8
1,858,335 - LRK53_RS08260 0.81 -0.5
1,858,621 + -0.1
1,858,622 - -0.8
1,858,622 - -2.0
1,858,679 - -1.2
1,858,774 + -0.8
1,858,774 + -1.2
1,858,969 + LRK53_RS08265 0.26 -1.2
1,858,969 + LRK53_RS08265 0.26 -0.1
1,858,970 - LRK53_RS08265 0.26 -0.3
1,859,000 + LRK53_RS08265 0.30 -0.8
1,859,000 + LRK53_RS08265 0.30 +1.4
1,859,000 + LRK53_RS08265 0.30 -3.5
1,859,000 + LRK53_RS08265 0.30 -2.7
1,859,000 + LRK53_RS08265 0.30 -1.5
1,859,000 + LRK53_RS08265 0.30 -1.2
1,859,000 + LRK53_RS08265 0.30 -1.1
1,859,001 - LRK53_RS08265 0.30 +0.5
1,859,001 - LRK53_RS08265 0.30 -0.2
1,859,001 - LRK53_RS08265 0.30 -0.7
1,859,001 - LRK53_RS08265 0.30 -2.3
1,859,001 - LRK53_RS08265 0.30 -1.3
1,859,001 - LRK53_RS08265 0.30 -0.5
1,859,001 - LRK53_RS08265 0.30 -0.6
1,859,001 - LRK53_RS08265 0.30 -1.4
1,859,140 + LRK53_RS08265 0.47 +0.1
1,859,140 + LRK53_RS08265 0.47 -0.9
1,859,140 + LRK53_RS08265 0.47 +0.0
1,859,140 + LRK53_RS08265 0.47 +0.3
1,859,140 + LRK53_RS08265 0.47 -1.4
1,859,140 + LRK53_RS08265 0.47 -1.8
1,859,141 - LRK53_RS08265 0.48 -1.7
1,859,518 + -1.2
1,859,519 - -1.2
1,859,519 - +0.1
1,859,519 - -0.8
1,859,898 + LRK53_RS08270 0.57 -0.4
1,859,899 - LRK53_RS08270 0.57 +0.2
1,859,899 - LRK53_RS08270 0.57 -1.5
1,859,899 - LRK53_RS08270 0.57 -2.1
1,859,899 - LRK53_RS08270 0.57 -0.9
1,859,940 + LRK53_RS08270 0.65 -1.5
1,859,940 + LRK53_RS08270 0.65 -0.4
1,859,940 + LRK53_RS08270 0.65 -0.3
1,859,940 + LRK53_RS08270 0.65 +0.3
1,859,940 + LRK53_RS08270 0.65 -0.3
1,859,941 - LRK53_RS08270 0.65 +1.6
1,859,941 - LRK53_RS08270 0.65 -0.4
1,859,941 - LRK53_RS08270 0.65 -1.4
1,859,941 - LRK53_RS08270 0.65 -1.0
1,859,941 - LRK53_RS08270 0.65 -1.8
1,859,941 - LRK53_RS08270 0.65 -1.8
1,859,941 - LRK53_RS08270 0.65 -1.0
1,859,946 + LRK53_RS08270 0.66 +0.1
1,859,946 + LRK53_RS08270 0.66 +0.3
1,859,946 + LRK53_RS08270 0.66 -1.9
1,859,946 + LRK53_RS08270 0.66 +1.1
1,859,946 + LRK53_RS08270 0.66 -2.0
1,859,946 + LRK53_RS08270 0.66 +0.9
1,859,946 + LRK53_RS08270 0.66 -1.3
1,859,946 + LRK53_RS08270 0.66 -0.9
1,859,946 + LRK53_RS08270 0.66 -2.0
1,859,946 + LRK53_RS08270 0.66 -1.2
1,859,946 + LRK53_RS08270 0.66 -1.4
1,859,947 - LRK53_RS08270 0.67 -2.5
1,859,947 - LRK53_RS08270 0.67 -3.5
1,860,260 + LRK53_RS08275 0.12 -0.5
1,860,260 + LRK53_RS08275 0.12 +0.0
1,860,260 + LRK53_RS08275 0.12 +1.0
1,860,260 + LRK53_RS08275 0.12 -1.4
1,860,261 - LRK53_RS08275 0.12 -0.0
1,860,263 + LRK53_RS08275 0.12 -1.4
1,860,264 - LRK53_RS08275 0.12 +0.2
1,860,264 - LRK53_RS08275 0.12 -0.8
1,860,264 - LRK53_RS08275 0.12 +1.4
1,860,264 - LRK53_RS08275 0.12 -1.9
1,860,300 - LRK53_RS08275 0.15 +0.3
1,860,300 - LRK53_RS08275 0.15 -1.8

Or see this region's nucleotide sequence