Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08260 and LRK53_RS08265 are separated by 174 nucleotides LRK53_RS08265 and LRK53_RS08270 are separated by 46 nucleotides LRK53_RS08270 and LRK53_RS08275 overlap by 4 nucleotides
LRK53_RS08260: LRK53_RS08260 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,857,247 to 1,858,584
_RS08260
LRK53_RS08265: LRK53_RS08265 - DUF3025 domain-containing protein, at 1,858,759 to 1,859,562
_RS08265
LRK53_RS08270: LRK53_RS08270 - transcription elongation factor GreB, at 1,859,609 to 1,860,115
_RS08270
LRK53_RS08275: LRK53_RS08275 - hypothetical protein, at 1,860,112 to 1,861,359
_RS08275
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1857.833 kb on - strand, within LRK53_RS08260 at 1857.850 kb on + strand, within LRK53_RS08260 at 1857.850 kb on + strand, within LRK53_RS08260 at 1857.851 kb on - strand, within LRK53_RS08260 at 1857.851 kb on - strand, within LRK53_RS08260 at 1857.851 kb on - strand, within LRK53_RS08260 at 1857.851 kb on - strand, within LRK53_RS08260 at 1857.851 kb on - strand, within LRK53_RS08260 at 1857.880 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.946 kb on + strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.947 kb on - strand, within LRK53_RS08260 at 1857.953 kb on - strand, within LRK53_RS08260 at 1857.953 kb on - strand, within LRK53_RS08260 at 1857.953 kb on - strand, within LRK53_RS08260 at 1858.013 kb on - strand, within LRK53_RS08260 at 1858.013 kb on - strand, within LRK53_RS08260 at 1858.013 kb on - strand, within LRK53_RS08260 at 1858.244 kb on - strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.334 kb on + strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.335 kb on - strand, within LRK53_RS08260 at 1858.621 kb on + strand at 1858.622 kb on - strand at 1858.622 kb on - strand at 1858.679 kb on - strand at 1858.774 kb on + strand at 1858.774 kb on + strand at 1858.969 kb on + strand, within LRK53_RS08265 at 1858.969 kb on + strand, within LRK53_RS08265 at 1858.970 kb on - strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.000 kb on + strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.001 kb on - strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.140 kb on + strand, within LRK53_RS08265 at 1859.141 kb on - strand, within LRK53_RS08265 at 1859.518 kb on + strand at 1859.519 kb on - strand at 1859.519 kb on - strand at 1859.519 kb on - strand at 1859.898 kb on + strand, within LRK53_RS08270 at 1859.899 kb on - strand, within LRK53_RS08270 at 1859.899 kb on - strand, within LRK53_RS08270 at 1859.899 kb on - strand, within LRK53_RS08270 at 1859.899 kb on - strand, within LRK53_RS08270 at 1859.940 kb on + strand, within LRK53_RS08270 at 1859.940 kb on + strand, within LRK53_RS08270 at 1859.940 kb on + strand, within LRK53_RS08270 at 1859.940 kb on + strand, within LRK53_RS08270 at 1859.940 kb on + strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.941 kb on - strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.946 kb on + strand, within LRK53_RS08270 at 1859.947 kb on - strand, within LRK53_RS08270 at 1859.947 kb on - strand, within LRK53_RS08270 at 1860.260 kb on + strand, within LRK53_RS08275 at 1860.260 kb on + strand, within LRK53_RS08275 at 1860.260 kb on + strand, within LRK53_RS08275 at 1860.260 kb on + strand, within LRK53_RS08275 at 1860.261 kb on - strand, within LRK53_RS08275 at 1860.263 kb on + strand, within LRK53_RS08275 at 1860.264 kb on - strand, within LRK53_RS08275 at 1860.264 kb on - strand, within LRK53_RS08275 at 1860.264 kb on - strand, within LRK53_RS08275 at 1860.264 kb on - strand, within LRK53_RS08275 at 1860.300 kb on - strand, within LRK53_RS08275 at 1860.300 kb on - strand, within LRK53_RS08275
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 1,857,833 - LRK53_RS08260 0.44 -0.7 1,857,850 + LRK53_RS08260 0.45 -0.4 1,857,850 + LRK53_RS08260 0.45 +0.7 1,857,851 - LRK53_RS08260 0.45 -0.4 1,857,851 - LRK53_RS08260 0.45 -0.3 1,857,851 - LRK53_RS08260 0.45 -0.9 1,857,851 - LRK53_RS08260 0.45 -1.4 1,857,851 - LRK53_RS08260 0.45 -1.0 1,857,880 + LRK53_RS08260 0.47 -1.9 1,857,946 + LRK53_RS08260 0.52 +0.3 1,857,946 + LRK53_RS08260 0.52 -0.6 1,857,946 + LRK53_RS08260 0.52 +0.2 1,857,946 + LRK53_RS08260 0.52 -0.1 1,857,946 + LRK53_RS08260 0.52 +0.2 1,857,946 + LRK53_RS08260 0.52 +0.6 1,857,946 + LRK53_RS08260 0.52 +1.3 1,857,946 + LRK53_RS08260 0.52 -1.8 1,857,946 + LRK53_RS08260 0.52 -0.8 1,857,946 + LRK53_RS08260 0.52 -0.4 1,857,946 + LRK53_RS08260 0.52 -1.7 1,857,946 + LRK53_RS08260 0.52 +1.0 1,857,946 + LRK53_RS08260 0.52 -0.6 1,857,946 + LRK53_RS08260 0.52 +0.0 1,857,947 - LRK53_RS08260 0.52 -0.0 1,857,947 - LRK53_RS08260 0.52 -2.0 1,857,947 - LRK53_RS08260 0.52 -0.1 1,857,947 - LRK53_RS08260 0.52 -0.3 1,857,947 - LRK53_RS08260 0.52 -0.2 1,857,947 - LRK53_RS08260 0.52 -0.8 1,857,947 - LRK53_RS08260 0.52 -1.5 1,857,947 - LRK53_RS08260 0.52 -0.1 1,857,947 - LRK53_RS08260 0.52 +0.7 1,857,947 - LRK53_RS08260 0.52 +1.4 1,857,947 - LRK53_RS08260 0.52 -0.2 1,857,947 - LRK53_RS08260 0.52 +1.0 1,857,947 - LRK53_RS08260 0.52 -2.4 1,857,947 - LRK53_RS08260 0.52 +1.0 1,857,953 - LRK53_RS08260 0.53 -0.7 1,857,953 - LRK53_RS08260 0.53 -1.3 1,857,953 - LRK53_RS08260 0.53 +0.2 1,858,013 - LRK53_RS08260 0.57 -1.2 1,858,013 - LRK53_RS08260 0.57 +0.4 1,858,013 - LRK53_RS08260 0.57 -1.3 1,858,244 - LRK53_RS08260 0.75 -0.6 1,858,334 + LRK53_RS08260 0.81 +0.8 1,858,334 + LRK53_RS08260 0.81 -0.6 1,858,334 + LRK53_RS08260 0.81 -1.2 1,858,334 + LRK53_RS08260 0.81 -1.0 1,858,334 + LRK53_RS08260 0.81 -1.1 1,858,334 + LRK53_RS08260 0.81 +1.6 1,858,335 - LRK53_RS08260 0.81 -0.6 1,858,335 - LRK53_RS08260 0.81 -0.3 1,858,335 - LRK53_RS08260 0.81 -1.6 1,858,335 - LRK53_RS08260 0.81 -1.5 1,858,335 - LRK53_RS08260 0.81 -1.4 1,858,335 - LRK53_RS08260 0.81 -0.7 1,858,335 - LRK53_RS08260 0.81 +0.8 1,858,335 - LRK53_RS08260 0.81 -0.5 1,858,621 + -0.1 1,858,622 - -0.8 1,858,622 - -2.0 1,858,679 - -1.2 1,858,774 + -0.8 1,858,774 + -1.2 1,858,969 + LRK53_RS08265 0.26 -1.2 1,858,969 + LRK53_RS08265 0.26 -0.1 1,858,970 - LRK53_RS08265 0.26 -0.3 1,859,000 + LRK53_RS08265 0.30 -0.8 1,859,000 + LRK53_RS08265 0.30 +1.4 1,859,000 + LRK53_RS08265 0.30 -3.5 1,859,000 + LRK53_RS08265 0.30 -2.7 1,859,000 + LRK53_RS08265 0.30 -1.5 1,859,000 + LRK53_RS08265 0.30 -1.2 1,859,000 + LRK53_RS08265 0.30 -1.1 1,859,001 - LRK53_RS08265 0.30 +0.5 1,859,001 - LRK53_RS08265 0.30 -0.2 1,859,001 - LRK53_RS08265 0.30 -0.7 1,859,001 - LRK53_RS08265 0.30 -2.3 1,859,001 - LRK53_RS08265 0.30 -1.3 1,859,001 - LRK53_RS08265 0.30 -0.5 1,859,001 - LRK53_RS08265 0.30 -0.6 1,859,001 - LRK53_RS08265 0.30 -1.4 1,859,140 + LRK53_RS08265 0.47 +0.1 1,859,140 + LRK53_RS08265 0.47 -0.9 1,859,140 + LRK53_RS08265 0.47 +0.0 1,859,140 + LRK53_RS08265 0.47 +0.3 1,859,140 + LRK53_RS08265 0.47 -1.4 1,859,140 + LRK53_RS08265 0.47 -1.8 1,859,141 - LRK53_RS08265 0.48 -1.7 1,859,518 + -1.2 1,859,519 - -1.2 1,859,519 - +0.1 1,859,519 - -0.8 1,859,898 + LRK53_RS08270 0.57 -0.4 1,859,899 - LRK53_RS08270 0.57 +0.2 1,859,899 - LRK53_RS08270 0.57 -1.5 1,859,899 - LRK53_RS08270 0.57 -2.1 1,859,899 - LRK53_RS08270 0.57 -0.9 1,859,940 + LRK53_RS08270 0.65 -1.5 1,859,940 + LRK53_RS08270 0.65 -0.4 1,859,940 + LRK53_RS08270 0.65 -0.3 1,859,940 + LRK53_RS08270 0.65 +0.3 1,859,940 + LRK53_RS08270 0.65 -0.3 1,859,941 - LRK53_RS08270 0.65 +1.6 1,859,941 - LRK53_RS08270 0.65 -0.4 1,859,941 - LRK53_RS08270 0.65 -1.4 1,859,941 - LRK53_RS08270 0.65 -1.0 1,859,941 - LRK53_RS08270 0.65 -1.8 1,859,941 - LRK53_RS08270 0.65 -1.8 1,859,941 - LRK53_RS08270 0.65 -1.0 1,859,946 + LRK53_RS08270 0.66 +0.1 1,859,946 + LRK53_RS08270 0.66 +0.3 1,859,946 + LRK53_RS08270 0.66 -1.9 1,859,946 + LRK53_RS08270 0.66 +1.1 1,859,946 + LRK53_RS08270 0.66 -2.0 1,859,946 + LRK53_RS08270 0.66 +0.9 1,859,946 + LRK53_RS08270 0.66 -1.3 1,859,946 + LRK53_RS08270 0.66 -0.9 1,859,946 + LRK53_RS08270 0.66 -2.0 1,859,946 + LRK53_RS08270 0.66 -1.2 1,859,946 + LRK53_RS08270 0.66 -1.4 1,859,947 - LRK53_RS08270 0.67 -2.5 1,859,947 - LRK53_RS08270 0.67 -3.5 1,860,260 + LRK53_RS08275 0.12 -0.5 1,860,260 + LRK53_RS08275 0.12 +0.0 1,860,260 + LRK53_RS08275 0.12 +1.0 1,860,260 + LRK53_RS08275 0.12 -1.4 1,860,261 - LRK53_RS08275 0.12 -0.0 1,860,263 + LRK53_RS08275 0.12 -1.4 1,860,264 - LRK53_RS08275 0.12 +0.2 1,860,264 - LRK53_RS08275 0.12 -0.8 1,860,264 - LRK53_RS08275 0.12 +1.4 1,860,264 - LRK53_RS08275 0.12 -1.9 1,860,300 - LRK53_RS08275 0.15 +0.3 1,860,300 - LRK53_RS08275 0.15 -1.8
Or see this region's nucleotide sequence