Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07295 and LRK53_RS07300 are separated by 425 nucleotides LRK53_RS07300 and LRK53_RS07305 are separated by 157 nucleotides
LRK53_RS07295: LRK53_RS07295 - hypothetical protein, at 1,636,865 to 1,638,460
_RS07295
LRK53_RS07300: LRK53_RS07300 - DEAD/DEAH box helicase, at 1,638,886 to 1,640,730
_RS07300
LRK53_RS07305: LRK53_RS07305 - S-formylglutathione hydrolase, at 1,640,888 to 1,641,736
_RS07305
Position (kb)
1638
1639
1640
1641 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1637.925 kb on + strand, within LRK53_RS07295 at 1637.925 kb on + strand, within LRK53_RS07295 at 1638.009 kb on + strand, within LRK53_RS07295 at 1638.009 kb on + strand, within LRK53_RS07295 at 1638.009 kb on + strand, within LRK53_RS07295 at 1638.009 kb on + strand, within LRK53_RS07295 at 1638.009 kb on + strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.010 kb on - strand, within LRK53_RS07295 at 1638.069 kb on + strand, within LRK53_RS07295 at 1638.069 kb on + strand, within LRK53_RS07295 at 1638.070 kb on - strand, within LRK53_RS07295 at 1638.070 kb on - strand, within LRK53_RS07295 at 1638.070 kb on - strand, within LRK53_RS07295 at 1638.480 kb on - strand at 1638.480 kb on - strand at 1638.480 kb on - strand at 1638.480 kb on - strand at 1638.623 kb on + strand at 1638.623 kb on + strand at 1638.623 kb on + strand at 1638.624 kb on - strand at 1638.624 kb on - strand at 1638.624 kb on - strand at 1638.624 kb on - strand at 1638.700 kb on - strand at 1638.700 kb on - strand at 1638.718 kb on - strand at 1638.718 kb on - strand at 1638.718 kb on - strand at 1638.805 kb on + strand at 1638.805 kb on + strand at 1638.805 kb on + strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.806 kb on - strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.887 kb on + strand at 1638.888 kb on - strand at 1638.888 kb on - strand at 1638.888 kb on - strand at 1638.888 kb on - strand at 1638.888 kb on - strand at 1639.098 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.128 kb on - strand, within LRK53_RS07300 at 1639.210 kb on - strand, within LRK53_RS07300 at 1639.210 kb on - strand, within LRK53_RS07300 at 1639.210 kb on - strand, within LRK53_RS07300 at 1639.214 kb on + strand, within LRK53_RS07300 at 1639.214 kb on + strand, within LRK53_RS07300 at 1639.214 kb on + strand, within LRK53_RS07300 at 1639.214 kb on + strand, within LRK53_RS07300 at 1639.214 kb on + strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.215 kb on - strand, within LRK53_RS07300 at 1639.373 kb on + strand, within LRK53_RS07300 at 1640.847 kb on - strand at 1640.945 kb on + strand at 1640.945 kb on + strand at 1640.945 kb on + strand at 1640.946 kb on - strand at 1640.946 kb on - strand at 1640.946 kb on - strand at 1640.993 kb on + strand, within LRK53_RS07305 at 1640.994 kb on - strand, within LRK53_RS07305 at 1640.994 kb on - strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.461 kb on + strand, within LRK53_RS07305 at 1641.462 kb on - strand, within LRK53_RS07305 at 1641.538 kb on + strand, within LRK53_RS07305 at 1641.538 kb on + strand, within LRK53_RS07305 at 1641.539 kb on - strand, within LRK53_RS07305 at 1641.639 kb on + strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 1,637,925 + LRK53_RS07295 0.66 -2.7 1,637,925 + LRK53_RS07295 0.66 -0.0 1,638,009 + LRK53_RS07295 0.72 -0.4 1,638,009 + LRK53_RS07295 0.72 -1.0 1,638,009 + LRK53_RS07295 0.72 -0.7 1,638,009 + LRK53_RS07295 0.72 -2.6 1,638,009 + LRK53_RS07295 0.72 -1.1 1,638,010 - LRK53_RS07295 0.72 -1.1 1,638,010 - LRK53_RS07295 0.72 +1.5 1,638,010 - LRK53_RS07295 0.72 -0.3 1,638,010 - LRK53_RS07295 0.72 +0.8 1,638,010 - LRK53_RS07295 0.72 +0.2 1,638,010 - LRK53_RS07295 0.72 -0.8 1,638,069 + LRK53_RS07295 0.75 +0.1 1,638,069 + LRK53_RS07295 0.75 +1.4 1,638,070 - LRK53_RS07295 0.76 +0.1 1,638,070 - LRK53_RS07295 0.76 -1.4 1,638,070 - LRK53_RS07295 0.76 +0.4 1,638,480 - +0.4 1,638,480 - -2.0 1,638,480 - +1.2 1,638,480 - +0.0 1,638,623 + +0.2 1,638,623 + -1.7 1,638,623 + +0.2 1,638,624 - -1.6 1,638,624 - -1.1 1,638,624 - +1.2 1,638,624 - -1.3 1,638,700 - -1.9 1,638,700 - -0.1 1,638,718 - +1.0 1,638,718 - +2.2 1,638,718 - -0.8 1,638,805 + +0.5 1,638,805 + +1.6 1,638,805 + -0.6 1,638,806 - -2.2 1,638,806 - -0.8 1,638,806 - -0.4 1,638,806 - -0.3 1,638,806 - -0.8 1,638,806 - -1.7 1,638,806 - -1.9 1,638,806 - -0.7 1,638,806 - -1.3 1,638,806 - -0.3 1,638,806 - -0.5 1,638,806 - +0.5 1,638,806 - -0.1 1,638,806 - -1.0 1,638,887 + -0.9 1,638,887 + -0.7 1,638,887 + -0.7 1,638,887 + -0.6 1,638,887 + -1.8 1,638,887 + +0.5 1,638,887 + -0.5 1,638,887 + +0.5 1,638,887 + -2.0 1,638,887 + -1.7 1,638,887 + -0.6 1,638,887 + +2.2 1,638,888 - -2.0 1,638,888 - +0.7 1,638,888 - -0.8 1,638,888 - -1.2 1,638,888 - -2.4 1,639,098 - LRK53_RS07300 0.11 -1.1 1,639,128 - LRK53_RS07300 0.13 +0.2 1,639,128 - LRK53_RS07300 0.13 -1.5 1,639,128 - LRK53_RS07300 0.13 -0.8 1,639,128 - LRK53_RS07300 0.13 -1.4 1,639,128 - LRK53_RS07300 0.13 -2.1 1,639,128 - LRK53_RS07300 0.13 +1.1 1,639,210 - LRK53_RS07300 0.18 -1.2 1,639,210 - LRK53_RS07300 0.18 -1.0 1,639,210 - LRK53_RS07300 0.18 -3.6 1,639,214 + LRK53_RS07300 0.18 -1.3 1,639,214 + LRK53_RS07300 0.18 -1.2 1,639,214 + LRK53_RS07300 0.18 -0.4 1,639,214 + LRK53_RS07300 0.18 -0.8 1,639,214 + LRK53_RS07300 0.18 -0.8 1,639,215 - LRK53_RS07300 0.18 +1.5 1,639,215 - LRK53_RS07300 0.18 +1.2 1,639,215 - LRK53_RS07300 0.18 -1.4 1,639,215 - LRK53_RS07300 0.18 +0.1 1,639,215 - LRK53_RS07300 0.18 +0.4 1,639,215 - LRK53_RS07300 0.18 -1.0 1,639,215 - LRK53_RS07300 0.18 +0.1 1,639,215 - LRK53_RS07300 0.18 -0.8 1,639,215 - LRK53_RS07300 0.18 -0.6 1,639,215 - LRK53_RS07300 0.18 -1.0 1,639,215 - LRK53_RS07300 0.18 +0.2 1,639,215 - LRK53_RS07300 0.18 -2.3 1,639,373 + LRK53_RS07300 0.26 -0.8 1,640,847 - +2.2 1,640,945 + -1.8 1,640,945 + +1.6 1,640,945 + -0.4 1,640,946 - -2.4 1,640,946 - +1.7 1,640,946 - -0.2 1,640,993 + LRK53_RS07305 0.12 -0.0 1,640,994 - LRK53_RS07305 0.12 -0.8 1,640,994 - LRK53_RS07305 0.12 -1.8 1,641,035 + LRK53_RS07305 0.17 -0.6 1,641,035 + LRK53_RS07305 0.17 -0.9 1,641,035 + LRK53_RS07305 0.17 +0.2 1,641,035 + LRK53_RS07305 0.17 +0.2 1,641,035 + LRK53_RS07305 0.17 -2.9 1,641,035 + LRK53_RS07305 0.17 -0.4 1,641,035 + LRK53_RS07305 0.17 -2.0 1,641,035 + LRK53_RS07305 0.17 -0.6 1,641,035 + LRK53_RS07305 0.17 -2.4 1,641,036 - LRK53_RS07305 0.17 -1.4 1,641,036 - LRK53_RS07305 0.17 -1.9 1,641,036 - LRK53_RS07305 0.17 -1.3 1,641,036 - LRK53_RS07305 0.17 +1.6 1,641,036 - LRK53_RS07305 0.17 -0.6 1,641,036 - LRK53_RS07305 0.17 -0.8 1,641,036 - LRK53_RS07305 0.17 -1.4 1,641,036 - LRK53_RS07305 0.17 -0.6 1,641,036 - LRK53_RS07305 0.17 -1.1 1,641,036 - LRK53_RS07305 0.17 -1.1 1,641,036 - LRK53_RS07305 0.17 -1.4 1,641,206 + LRK53_RS07305 0.37 -0.4 1,641,206 + LRK53_RS07305 0.37 +0.9 1,641,206 + LRK53_RS07305 0.37 -0.1 1,641,206 + LRK53_RS07305 0.37 -1.0 1,641,207 - LRK53_RS07305 0.38 -0.2 1,641,207 - LRK53_RS07305 0.38 -2.2 1,641,207 - LRK53_RS07305 0.38 -2.4 1,641,207 - LRK53_RS07305 0.38 -1.0 1,641,207 - LRK53_RS07305 0.38 -0.8 1,641,207 - LRK53_RS07305 0.38 -0.8 1,641,257 + LRK53_RS07305 0.43 +0.3 1,641,257 + LRK53_RS07305 0.43 -1.4 1,641,257 + LRK53_RS07305 0.43 -1.7 1,641,257 + LRK53_RS07305 0.43 -2.4 1,641,257 + LRK53_RS07305 0.43 -0.8 1,641,257 + LRK53_RS07305 0.43 +0.5 1,641,257 + LRK53_RS07305 0.43 +0.6 1,641,257 + LRK53_RS07305 0.43 +0.6 1,641,257 + LRK53_RS07305 0.43 +0.5 1,641,258 - LRK53_RS07305 0.44 -0.9 1,641,258 - LRK53_RS07305 0.44 -1.8 1,641,258 - LRK53_RS07305 0.44 -0.8 1,641,258 - LRK53_RS07305 0.44 -1.3 1,641,258 - LRK53_RS07305 0.44 -0.5 1,641,258 - LRK53_RS07305 0.44 -0.1 1,641,258 - LRK53_RS07305 0.44 +0.2 1,641,258 - LRK53_RS07305 0.44 +0.3 1,641,258 - LRK53_RS07305 0.44 -0.2 1,641,258 - LRK53_RS07305 0.44 -0.2 1,641,258 - LRK53_RS07305 0.44 -2.0 1,641,258 - LRK53_RS07305 0.44 +0.3 1,641,258 - LRK53_RS07305 0.44 -0.8 1,641,258 - LRK53_RS07305 0.44 +0.8 1,641,258 - LRK53_RS07305 0.44 -2.2 1,641,461 + LRK53_RS07305 0.67 -0.5 1,641,462 - LRK53_RS07305 0.68 -0.5 1,641,538 + LRK53_RS07305 0.77 +0.7 1,641,538 + LRK53_RS07305 0.77 +0.9 1,641,539 - LRK53_RS07305 0.77 -2.2 1,641,639 + LRK53_RS07305 0.88 -0.5 1,641,640 - LRK53_RS07305 0.89 -1.0 1,641,640 - LRK53_RS07305 0.89 +0.7 1,641,640 - LRK53_RS07305 0.89 -0.1 1,641,668 + -0.4 1,641,668 + -2.0 1,641,668 + -0.3 1,641,668 + -0.3 1,641,668 + -1.5 1,641,668 + -0.9 1,641,668 + -1.6 1,641,668 + +0.4 1,641,668 + -2.8 1,641,668 + -1.8 1,641,668 + -0.1 1,641,668 + -1.7 1,641,668 + -0.8 1,641,668 + -1.2 1,641,668 + -1.0 1,641,669 - +1.4 1,641,669 - -1.5 1,641,669 - -1.1 1,641,669 - -0.6 1,641,669 - -1.9 1,641,669 - +1.0 1,641,669 - +3.0 1,641,669 - +1.5 1,641,669 - -0.9 1,641,669 - -1.0 1,641,669 - +0.8 1,641,669 - -0.8 1,641,669 - -1.6 1,641,669 - -0.8
Or see this region's nucleotide sequence