Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07300

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07295 and LRK53_RS07300 are separated by 425 nucleotidesLRK53_RS07300 and LRK53_RS07305 are separated by 157 nucleotides LRK53_RS07295: LRK53_RS07295 - hypothetical protein, at 1,636,865 to 1,638,460 _RS07295 LRK53_RS07300: LRK53_RS07300 - DEAD/DEAH box helicase, at 1,638,886 to 1,640,730 _RS07300 LRK53_RS07305: LRK53_RS07305 - S-formylglutathione hydrolase, at 1,640,888 to 1,641,736 _RS07305 Position (kb) 1638 1639 1640 1641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1637.925 kb on + strand, within LRK53_RS07295at 1637.925 kb on + strand, within LRK53_RS07295at 1638.009 kb on + strand, within LRK53_RS07295at 1638.009 kb on + strand, within LRK53_RS07295at 1638.009 kb on + strand, within LRK53_RS07295at 1638.009 kb on + strand, within LRK53_RS07295at 1638.009 kb on + strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.010 kb on - strand, within LRK53_RS07295at 1638.069 kb on + strand, within LRK53_RS07295at 1638.069 kb on + strand, within LRK53_RS07295at 1638.070 kb on - strand, within LRK53_RS07295at 1638.070 kb on - strand, within LRK53_RS07295at 1638.070 kb on - strand, within LRK53_RS07295at 1638.480 kb on - strandat 1638.480 kb on - strandat 1638.480 kb on - strandat 1638.480 kb on - strandat 1638.623 kb on + strandat 1638.623 kb on + strandat 1638.623 kb on + strandat 1638.624 kb on - strandat 1638.624 kb on - strandat 1638.624 kb on - strandat 1638.624 kb on - strandat 1638.700 kb on - strandat 1638.700 kb on - strandat 1638.718 kb on - strandat 1638.718 kb on - strandat 1638.718 kb on - strandat 1638.805 kb on + strandat 1638.805 kb on + strandat 1638.805 kb on + strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.806 kb on - strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.887 kb on + strandat 1638.888 kb on - strandat 1638.888 kb on - strandat 1638.888 kb on - strandat 1638.888 kb on - strandat 1638.888 kb on - strandat 1639.098 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.128 kb on - strand, within LRK53_RS07300at 1639.210 kb on - strand, within LRK53_RS07300at 1639.210 kb on - strand, within LRK53_RS07300at 1639.210 kb on - strand, within LRK53_RS07300at 1639.214 kb on + strand, within LRK53_RS07300at 1639.214 kb on + strand, within LRK53_RS07300at 1639.214 kb on + strand, within LRK53_RS07300at 1639.214 kb on + strand, within LRK53_RS07300at 1639.214 kb on + strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.215 kb on - strand, within LRK53_RS07300at 1639.373 kb on + strand, within LRK53_RS07300at 1640.847 kb on - strandat 1640.945 kb on + strandat 1640.945 kb on + strandat 1640.945 kb on + strandat 1640.946 kb on - strandat 1640.946 kb on - strandat 1640.946 kb on - strandat 1640.993 kb on + strand, within LRK53_RS07305at 1640.994 kb on - strand, within LRK53_RS07305at 1640.994 kb on - strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.035 kb on + strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.036 kb on - strand, within LRK53_RS07305at 1641.206 kb on + strand, within LRK53_RS07305at 1641.206 kb on + strand, within LRK53_RS07305at 1641.206 kb on + strand, within LRK53_RS07305at 1641.206 kb on + strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.207 kb on - strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.257 kb on + strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.258 kb on - strand, within LRK53_RS07305at 1641.461 kb on + strand, within LRK53_RS07305at 1641.462 kb on - strand, within LRK53_RS07305at 1641.538 kb on + strand, within LRK53_RS07305at 1641.538 kb on + strand, within LRK53_RS07305at 1641.539 kb on - strand, within LRK53_RS07305at 1641.639 kb on + strand, within LRK53_RS07305at 1641.640 kb on - strand, within LRK53_RS07305at 1641.640 kb on - strand, within LRK53_RS07305at 1641.640 kb on - strand, within LRK53_RS07305at 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.668 kb on + strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strandat 1641.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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1,637,925 + LRK53_RS07295 0.66 -2.7
1,637,925 + LRK53_RS07295 0.66 -0.0
1,638,009 + LRK53_RS07295 0.72 -0.4
1,638,009 + LRK53_RS07295 0.72 -1.0
1,638,009 + LRK53_RS07295 0.72 -0.7
1,638,009 + LRK53_RS07295 0.72 -2.6
1,638,009 + LRK53_RS07295 0.72 -1.1
1,638,010 - LRK53_RS07295 0.72 -1.1
1,638,010 - LRK53_RS07295 0.72 +1.5
1,638,010 - LRK53_RS07295 0.72 -0.3
1,638,010 - LRK53_RS07295 0.72 +0.8
1,638,010 - LRK53_RS07295 0.72 +0.2
1,638,010 - LRK53_RS07295 0.72 -0.8
1,638,069 + LRK53_RS07295 0.75 +0.1
1,638,069 + LRK53_RS07295 0.75 +1.4
1,638,070 - LRK53_RS07295 0.76 +0.1
1,638,070 - LRK53_RS07295 0.76 -1.4
1,638,070 - LRK53_RS07295 0.76 +0.4
1,638,480 - +0.4
1,638,480 - -2.0
1,638,480 - +1.2
1,638,480 - +0.0
1,638,623 + +0.2
1,638,623 + -1.7
1,638,623 + +0.2
1,638,624 - -1.6
1,638,624 - -1.1
1,638,624 - +1.2
1,638,624 - -1.3
1,638,700 - -1.9
1,638,700 - -0.1
1,638,718 - +1.0
1,638,718 - +2.2
1,638,718 - -0.8
1,638,805 + +0.5
1,638,805 + +1.6
1,638,805 + -0.6
1,638,806 - -2.2
1,638,806 - -0.8
1,638,806 - -0.4
1,638,806 - -0.3
1,638,806 - -0.8
1,638,806 - -1.7
1,638,806 - -1.9
1,638,806 - -0.7
1,638,806 - -1.3
1,638,806 - -0.3
1,638,806 - -0.5
1,638,806 - +0.5
1,638,806 - -0.1
1,638,806 - -1.0
1,638,887 + -0.9
1,638,887 + -0.7
1,638,887 + -0.7
1,638,887 + -0.6
1,638,887 + -1.8
1,638,887 + +0.5
1,638,887 + -0.5
1,638,887 + +0.5
1,638,887 + -2.0
1,638,887 + -1.7
1,638,887 + -0.6
1,638,887 + +2.2
1,638,888 - -2.0
1,638,888 - +0.7
1,638,888 - -0.8
1,638,888 - -1.2
1,638,888 - -2.4
1,639,098 - LRK53_RS07300 0.11 -1.1
1,639,128 - LRK53_RS07300 0.13 +0.2
1,639,128 - LRK53_RS07300 0.13 -1.5
1,639,128 - LRK53_RS07300 0.13 -0.8
1,639,128 - LRK53_RS07300 0.13 -1.4
1,639,128 - LRK53_RS07300 0.13 -2.1
1,639,128 - LRK53_RS07300 0.13 +1.1
1,639,210 - LRK53_RS07300 0.18 -1.2
1,639,210 - LRK53_RS07300 0.18 -1.0
1,639,210 - LRK53_RS07300 0.18 -3.6
1,639,214 + LRK53_RS07300 0.18 -1.3
1,639,214 + LRK53_RS07300 0.18 -1.2
1,639,214 + LRK53_RS07300 0.18 -0.4
1,639,214 + LRK53_RS07300 0.18 -0.8
1,639,214 + LRK53_RS07300 0.18 -0.8
1,639,215 - LRK53_RS07300 0.18 +1.5
1,639,215 - LRK53_RS07300 0.18 +1.2
1,639,215 - LRK53_RS07300 0.18 -1.4
1,639,215 - LRK53_RS07300 0.18 +0.1
1,639,215 - LRK53_RS07300 0.18 +0.4
1,639,215 - LRK53_RS07300 0.18 -1.0
1,639,215 - LRK53_RS07300 0.18 +0.1
1,639,215 - LRK53_RS07300 0.18 -0.8
1,639,215 - LRK53_RS07300 0.18 -0.6
1,639,215 - LRK53_RS07300 0.18 -1.0
1,639,215 - LRK53_RS07300 0.18 +0.2
1,639,215 - LRK53_RS07300 0.18 -2.3
1,639,373 + LRK53_RS07300 0.26 -0.8
1,640,847 - +2.2
1,640,945 + -1.8
1,640,945 + +1.6
1,640,945 + -0.4
1,640,946 - -2.4
1,640,946 - +1.7
1,640,946 - -0.2
1,640,993 + LRK53_RS07305 0.12 -0.0
1,640,994 - LRK53_RS07305 0.12 -0.8
1,640,994 - LRK53_RS07305 0.12 -1.8
1,641,035 + LRK53_RS07305 0.17 -0.6
1,641,035 + LRK53_RS07305 0.17 -0.9
1,641,035 + LRK53_RS07305 0.17 +0.2
1,641,035 + LRK53_RS07305 0.17 +0.2
1,641,035 + LRK53_RS07305 0.17 -2.9
1,641,035 + LRK53_RS07305 0.17 -0.4
1,641,035 + LRK53_RS07305 0.17 -2.0
1,641,035 + LRK53_RS07305 0.17 -0.6
1,641,035 + LRK53_RS07305 0.17 -2.4
1,641,036 - LRK53_RS07305 0.17 -1.4
1,641,036 - LRK53_RS07305 0.17 -1.9
1,641,036 - LRK53_RS07305 0.17 -1.3
1,641,036 - LRK53_RS07305 0.17 +1.6
1,641,036 - LRK53_RS07305 0.17 -0.6
1,641,036 - LRK53_RS07305 0.17 -0.8
1,641,036 - LRK53_RS07305 0.17 -1.4
1,641,036 - LRK53_RS07305 0.17 -0.6
1,641,036 - LRK53_RS07305 0.17 -1.1
1,641,036 - LRK53_RS07305 0.17 -1.1
1,641,036 - LRK53_RS07305 0.17 -1.4
1,641,206 + LRK53_RS07305 0.37 -0.4
1,641,206 + LRK53_RS07305 0.37 +0.9
1,641,206 + LRK53_RS07305 0.37 -0.1
1,641,206 + LRK53_RS07305 0.37 -1.0
1,641,207 - LRK53_RS07305 0.38 -0.2
1,641,207 - LRK53_RS07305 0.38 -2.2
1,641,207 - LRK53_RS07305 0.38 -2.4
1,641,207 - LRK53_RS07305 0.38 -1.0
1,641,207 - LRK53_RS07305 0.38 -0.8
1,641,207 - LRK53_RS07305 0.38 -0.8
1,641,257 + LRK53_RS07305 0.43 +0.3
1,641,257 + LRK53_RS07305 0.43 -1.4
1,641,257 + LRK53_RS07305 0.43 -1.7
1,641,257 + LRK53_RS07305 0.43 -2.4
1,641,257 + LRK53_RS07305 0.43 -0.8
1,641,257 + LRK53_RS07305 0.43 +0.5
1,641,257 + LRK53_RS07305 0.43 +0.6
1,641,257 + LRK53_RS07305 0.43 +0.6
1,641,257 + LRK53_RS07305 0.43 +0.5
1,641,258 - LRK53_RS07305 0.44 -0.9
1,641,258 - LRK53_RS07305 0.44 -1.8
1,641,258 - LRK53_RS07305 0.44 -0.8
1,641,258 - LRK53_RS07305 0.44 -1.3
1,641,258 - LRK53_RS07305 0.44 -0.5
1,641,258 - LRK53_RS07305 0.44 -0.1
1,641,258 - LRK53_RS07305 0.44 +0.2
1,641,258 - LRK53_RS07305 0.44 +0.3
1,641,258 - LRK53_RS07305 0.44 -0.2
1,641,258 - LRK53_RS07305 0.44 -0.2
1,641,258 - LRK53_RS07305 0.44 -2.0
1,641,258 - LRK53_RS07305 0.44 +0.3
1,641,258 - LRK53_RS07305 0.44 -0.8
1,641,258 - LRK53_RS07305 0.44 +0.8
1,641,258 - LRK53_RS07305 0.44 -2.2
1,641,461 + LRK53_RS07305 0.67 -0.5
1,641,462 - LRK53_RS07305 0.68 -0.5
1,641,538 + LRK53_RS07305 0.77 +0.7
1,641,538 + LRK53_RS07305 0.77 +0.9
1,641,539 - LRK53_RS07305 0.77 -2.2
1,641,639 + LRK53_RS07305 0.88 -0.5
1,641,640 - LRK53_RS07305 0.89 -1.0
1,641,640 - LRK53_RS07305 0.89 +0.7
1,641,640 - LRK53_RS07305 0.89 -0.1
1,641,668 + -0.4
1,641,668 + -2.0
1,641,668 + -0.3
1,641,668 + -0.3
1,641,668 + -1.5
1,641,668 + -0.9
1,641,668 + -1.6
1,641,668 + +0.4
1,641,668 + -2.8
1,641,668 + -1.8
1,641,668 + -0.1
1,641,668 + -1.7
1,641,668 + -0.8
1,641,668 + -1.2
1,641,668 + -1.0
1,641,669 - +1.4
1,641,669 - -1.5
1,641,669 - -1.1
1,641,669 - -0.6
1,641,669 - -1.9
1,641,669 - +1.0
1,641,669 - +3.0
1,641,669 - +1.5
1,641,669 - -0.9
1,641,669 - -1.0
1,641,669 - +0.8
1,641,669 - -0.8
1,641,669 - -1.6
1,641,669 - -0.8

Or see this region's nucleotide sequence