Experiment: Biofilm; Day4; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02525 and LRK53_RS02530 are separated by 151 nucleotides LRK53_RS02530 and LRK53_RS02535 are separated by 99 nucleotides LRK53_RS02535 and LRK53_RS02540 are separated by 60 nucleotides LRK53_RS02540 and LRK53_RS02545 are separated by 149 nucleotides
LRK53_RS02525: LRK53_RS02525 - transcriptional regulator, at 577,331 to 578,314
_RS02525
LRK53_RS02530: LRK53_RS02530 - hypothetical protein, at 578,466 to 578,663
_RS02530
LRK53_RS02535: LRK53_RS02535 - DUF481 domain-containing protein, at 578,763 to 579,572
_RS02535
LRK53_RS02540: LRK53_RS02540 - hypothetical protein, at 579,633 to 580,304
_RS02540
LRK53_RS02545: LRK53_RS02545 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 580,454 to 581,197
_RS02545
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 577.764 kb on + strand, within LRK53_RS02525 at 578.125 kb on - strand, within LRK53_RS02525 at 578.125 kb on - strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.259 kb on + strand at 578.259 kb on + strand at 578.259 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.297 kb on - strand at 578.305 kb on - strand at 578.305 kb on - strand at 578.326 kb on + strand at 578.326 kb on + strand at 578.326 kb on + strand at 578.327 kb on - strand at 578.327 kb on - strand at 578.327 kb on - strand at 578.349 kb on + strand at 578.349 kb on + strand at 578.349 kb on + strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.491 kb on - strand, within LRK53_RS02530 at 578.512 kb on + strand, within LRK53_RS02530 at 578.622 kb on + strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.722 kb on + strand at 578.722 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.734 kb on + strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.742 kb on - strand at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.132 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.194 kb on + strand, within LRK53_RS02535 at 579.194 kb on + strand, within LRK53_RS02535 at 579.195 kb on - strand, within LRK53_RS02535 at 579.246 kb on + strand, within LRK53_RS02535 at 579.247 kb on - strand, within LRK53_RS02535 at 579.247 kb on - strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.493 kb on + strand at 579.493 kb on + strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.617 kb on + strand at 579.618 kb on - strand at 579.634 kb on + strand at 579.634 kb on + strand at 579.635 kb on - strand at 579.635 kb on - strand at 580.136 kb on + strand, within LRK53_RS02540 at 580.310 kb on + strand at 580.335 kb on + strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7 remove 577,764 + LRK53_RS02525 0.44 -0.6 578,125 - LRK53_RS02525 0.81 -0.4 578,125 - LRK53_RS02525 0.81 +1.4 578,202 + LRK53_RS02525 0.89 -2.0 578,202 + LRK53_RS02525 0.89 -0.9 578,202 + LRK53_RS02525 0.89 -1.3 578,202 + LRK53_RS02525 0.89 -1.2 578,203 - LRK53_RS02525 0.89 -1.0 578,203 - LRK53_RS02525 0.89 -0.6 578,203 - LRK53_RS02525 0.89 -0.3 578,259 + +0.8 578,259 + +0.4 578,259 + -0.2 578,294 + +1.2 578,294 + -2.8 578,294 + -0.6 578,294 + -1.4 578,294 + -1.8 578,294 + +0.1 578,294 + +0.8 578,294 + +0.2 578,294 + -1.6 578,294 + +1.5 578,294 + -0.5 578,295 - -1.5 578,295 - -1.2 578,295 - -0.2 578,295 - -0.8 578,295 - +0.2 578,295 - -0.1 578,295 - -1.5 578,295 - +0.4 578,295 - -1.5 578,295 - -0.3 578,297 - -0.4 578,305 - +0.8 578,305 - -2.2 578,326 + -1.5 578,326 + -0.5 578,326 + -0.2 578,327 - -0.0 578,327 - -1.2 578,327 - -0.5 578,349 + +1.6 578,349 + -0.2 578,349 + +1.2 578,350 - +1.0 578,350 - -1.6 578,350 - -0.4 578,350 - +0.9 578,350 - -0.7 578,350 - +1.7 578,350 - -0.8 578,350 - -0.7 578,350 - +0.9 578,350 - -0.4 578,350 - +0.1 578,490 + LRK53_RS02530 0.12 -0.8 578,490 + LRK53_RS02530 0.12 -3.7 578,490 + LRK53_RS02530 0.12 +0.2 578,490 + LRK53_RS02530 0.12 +0.3 578,490 + LRK53_RS02530 0.12 -3.0 578,490 + LRK53_RS02530 0.12 +0.5 578,490 + LRK53_RS02530 0.12 -0.8 578,491 - LRK53_RS02530 0.13 -0.6 578,512 + LRK53_RS02530 0.23 -2.3 578,622 + LRK53_RS02530 0.79 +0.5 578,623 - LRK53_RS02530 0.79 +0.7 578,623 - LRK53_RS02530 0.79 -0.5 578,623 - LRK53_RS02530 0.79 -1.1 578,623 - LRK53_RS02530 0.79 +0.1 578,722 + -1.2 578,722 + -1.1 578,731 + +0.8 578,731 + +0.6 578,731 + +1.3 578,731 + -1.6 578,731 + -0.6 578,734 + -0.2 578,735 - -2.3 578,735 - +1.1 578,735 - -0.9 578,735 - -0.0 578,735 - -1.6 578,742 - +0.1 579,111 + LRK53_RS02535 0.43 +1.4 579,111 + LRK53_RS02535 0.43 +1.4 579,111 + LRK53_RS02535 0.43 +0.4 579,111 + LRK53_RS02535 0.43 -1.4 579,111 + LRK53_RS02535 0.43 -0.8 579,111 + LRK53_RS02535 0.43 -0.2 579,111 + LRK53_RS02535 0.43 +0.5 579,111 + LRK53_RS02535 0.43 -1.2 579,111 + LRK53_RS02535 0.43 -0.4 579,111 + LRK53_RS02535 0.43 +1.2 579,111 + LRK53_RS02535 0.43 -0.6 579,112 - LRK53_RS02535 0.43 -1.2 579,112 - LRK53_RS02535 0.43 -2.5 579,112 - LRK53_RS02535 0.43 +1.7 579,112 - LRK53_RS02535 0.43 +0.7 579,112 - LRK53_RS02535 0.43 +0.4 579,112 - LRK53_RS02535 0.43 -1.8 579,112 - LRK53_RS02535 0.43 -1.5 579,132 + LRK53_RS02535 0.46 -1.5 579,192 + LRK53_RS02535 0.53 -0.9 579,192 + LRK53_RS02535 0.53 -1.4 579,192 + LRK53_RS02535 0.53 -1.9 579,192 + LRK53_RS02535 0.53 -0.6 579,192 + LRK53_RS02535 0.53 +1.4 579,192 + LRK53_RS02535 0.53 -1.2 579,192 + LRK53_RS02535 0.53 -1.3 579,193 - LRK53_RS02535 0.53 +1.1 579,193 - LRK53_RS02535 0.53 -0.4 579,193 - LRK53_RS02535 0.53 -0.4 579,193 - LRK53_RS02535 0.53 +0.6 579,193 - LRK53_RS02535 0.53 -0.3 579,193 - LRK53_RS02535 0.53 -0.7 579,194 + LRK53_RS02535 0.53 -1.2 579,194 + LRK53_RS02535 0.53 -0.4 579,195 - LRK53_RS02535 0.53 -0.8 579,246 + LRK53_RS02535 0.60 -0.4 579,247 - LRK53_RS02535 0.60 -0.4 579,247 - LRK53_RS02535 0.60 +0.5 579,351 + LRK53_RS02535 0.73 -2.8 579,351 + LRK53_RS02535 0.73 -0.2 579,351 + LRK53_RS02535 0.73 -0.2 579,351 + LRK53_RS02535 0.73 +0.9 579,351 + LRK53_RS02535 0.73 -0.9 579,351 + LRK53_RS02535 0.73 -1.5 579,351 + LRK53_RS02535 0.73 -0.2 579,351 + LRK53_RS02535 0.73 +0.0 579,351 + LRK53_RS02535 0.73 -1.3 579,351 + LRK53_RS02535 0.73 -1.4 579,351 + LRK53_RS02535 0.73 +0.6 579,351 + LRK53_RS02535 0.73 -1.1 579,351 + LRK53_RS02535 0.73 -2.7 579,351 + LRK53_RS02535 0.73 +0.4 579,351 + LRK53_RS02535 0.73 -2.1 579,351 + LRK53_RS02535 0.73 +0.8 579,351 + LRK53_RS02535 0.73 -2.1 579,352 - LRK53_RS02535 0.73 -0.8 579,352 - LRK53_RS02535 0.73 +1.7 579,352 - LRK53_RS02535 0.73 -1.1 579,352 - LRK53_RS02535 0.73 -0.8 579,352 - LRK53_RS02535 0.73 -1.4 579,352 - LRK53_RS02535 0.73 +1.5 579,352 - LRK53_RS02535 0.73 +0.3 579,352 - LRK53_RS02535 0.73 +0.1 579,352 - LRK53_RS02535 0.73 -0.6 579,352 - LRK53_RS02535 0.73 +0.6 579,357 + LRK53_RS02535 0.73 -1.6 579,357 + LRK53_RS02535 0.73 -1.9 579,357 + LRK53_RS02535 0.73 -1.1 579,357 + LRK53_RS02535 0.73 -1.6 579,357 + LRK53_RS02535 0.73 -1.2 579,357 + LRK53_RS02535 0.73 +0.1 579,357 + LRK53_RS02535 0.73 -0.8 579,357 + LRK53_RS02535 0.73 -0.6 579,357 + LRK53_RS02535 0.73 -0.2 579,357 + LRK53_RS02535 0.73 -0.8 579,357 + LRK53_RS02535 0.73 -1.8 579,357 + LRK53_RS02535 0.73 -1.8 579,357 + LRK53_RS02535 0.73 -0.8 579,357 + LRK53_RS02535 0.73 +0.8 579,357 + LRK53_RS02535 0.73 -0.2 579,357 + LRK53_RS02535 0.73 +0.2 579,358 - LRK53_RS02535 0.73 -1.8 579,358 - LRK53_RS02535 0.73 -1.2 579,358 - LRK53_RS02535 0.73 -1.3 579,358 - LRK53_RS02535 0.73 -0.4 579,358 - LRK53_RS02535 0.73 -0.8 579,358 - LRK53_RS02535 0.73 +0.9 579,358 - LRK53_RS02535 0.73 -0.1 579,358 - LRK53_RS02535 0.73 -0.0 579,358 - LRK53_RS02535 0.73 -0.2 579,358 - LRK53_RS02535 0.73 -2.1 579,358 - LRK53_RS02535 0.73 -0.9 579,358 - LRK53_RS02535 0.73 +0.9 579,423 + LRK53_RS02535 0.81 -0.7 579,423 + LRK53_RS02535 0.81 -2.8 579,423 + LRK53_RS02535 0.81 -1.7 579,423 + LRK53_RS02535 0.81 -1.1 579,423 + LRK53_RS02535 0.81 -0.9 579,423 + LRK53_RS02535 0.81 +0.4 579,423 + LRK53_RS02535 0.81 -0.2 579,424 - LRK53_RS02535 0.82 -0.4 579,424 - LRK53_RS02535 0.82 +0.3 579,424 - LRK53_RS02535 0.82 -0.3 579,424 - LRK53_RS02535 0.82 +1.7 579,424 - LRK53_RS02535 0.82 +0.6 579,424 - LRK53_RS02535 0.82 -1.5 579,424 - LRK53_RS02535 0.82 -1.5 579,424 - LRK53_RS02535 0.82 -1.1 579,424 - LRK53_RS02535 0.82 -2.6 579,424 - LRK53_RS02535 0.82 -0.4 579,424 - LRK53_RS02535 0.82 +1.2 579,424 - LRK53_RS02535 0.82 -1.3 579,424 - LRK53_RS02535 0.82 -0.4 579,424 - LRK53_RS02535 0.82 +0.8 579,493 + -1.4 579,493 + -0.4 579,494 - -1.8 579,494 - -0.8 579,494 - -1.2 579,494 - -1.7 579,561 + -0.9 579,561 + -0.4 579,561 + -0.8 579,561 + +2.6 579,561 + -1.5 579,562 - -1.6 579,562 - -0.8 579,562 - -1.0 579,562 - -0.8 579,562 - +0.1 579,570 + -0.4 579,570 + -1.1 579,570 + -1.5 579,570 + +0.4 579,570 + +0.7 579,570 + +0.2 579,570 + -1.0 579,571 - -0.4 579,571 - +0.8 579,571 - +2.4 579,571 - +0.9 579,571 - +2.4 579,571 - +0.5 579,617 + -1.2 579,618 - +1.4 579,634 + +3.4 579,634 + +0.0 579,635 - -0.4 579,635 - -2.4 580,136 + LRK53_RS02540 0.75 +1.6 580,310 + +0.8 580,335 + -0.9 580,336 - -0.6 580,336 - -2.9 580,336 - +0.2 580,336 - -1.2
Or see this region's nucleotide sequence